Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F258 I0 R1
|
432 |
103.0 |
5191697 |
92.7% |
4812703 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,985 |
T→C |
33.8% |
intergenic (‑195/+113) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,985 | 0 | T | C | 33.8%
| 286.5
/ 194.9
| 204 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (78/57); new base C (64/5); total (142/62) |
| Fisher's exact test for biased strand distribution p-value = 5.94e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.35e-02 |
Only 100 of 206 total aligned reads displayed.
TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGT > NC_000913/3705886‑3706081
|
gcttcgggATGGGGCTGCGCGCGGGGGCCCACCGCTCCCGGGTCGACGGATTGTTGACAACGTGCGTTTTGTTTATGCCGGTTGCGGCGTTAACGCCTTa < 1:2251500/94‑1 (MQ=12)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:1508511/1‑100 (MQ=255)
ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 1:320805/100‑1 (MQ=255)
gATGGCGCTGCACGCAGAGCCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 1:2158910/100‑2 (MQ=25)
ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc > 1:556861/1‑100 (MQ=255)
ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCATaa < 1:654166/100‑2 (MQ=25)
gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 2:2282272/1‑100 (MQ=255)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa > 2:703729/1‑100 (MQ=255)
gcTGCACTCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 2:1359750/1‑100 (MQ=255)
cTGCACACAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaaa < 1:2177060/100‑1 (MQ=255)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 1:1130908/100‑1 (MQ=255)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg > 1:2378553/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCTGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 2:1777335/100‑1 (MQ=255)
gCAGAGGCACCGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGTCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:1697668/100‑1 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAtt > 1:460027/1‑100 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAtt > 2:2580507/1‑100 (MQ=255)
gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 2:1920824/100‑1 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:552189/100‑1 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 2:2123473/100‑1 (MQ=255)
aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATa > 1:2265187/1‑100 (MQ=255)
aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATa < 1:2487073/100‑1 (MQ=255)
aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATAGTGCAAATTCAATa > 1:2526968/1‑100 (MQ=255)
gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc > 1:1446952/1‑100 (MQ=255)
gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAt > 2:2384083/1‑100 (MQ=255)
ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 1:2062999/1‑100 (MQ=255)
ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 2:1693903/1‑100 (MQ=255)
cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTg > 2:2327539/1‑100 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc > 2:2451626/1‑100 (MQ=255)
ccGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCa > 2:2494180/1‑100 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCa > 1:700297/1‑99 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAg < 2:2485311/100‑1 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTGGTTTATGCCGAATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATGGTGCAAATTCAATACATTGCAg > 2:2325510/1‑100 (MQ=255)
gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGa > 1:2417159/1‑100 (MQ=255)
ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGaa > 2:1235673/1‑100 (MQ=255)
tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAt‑‑t > 2:336142/1‑100 (MQ=255)
aGATTGTTGACCAAGTGCGCCTCGTTTATGCCCACTGCGGCGTTAACGCCCTATCCGGCCAAC‑AAAATCGTGCAAATTAACAACATTGCAGAAC‑‑T‑‑‑TTC‑‑Gt < 1:1024901/100‑1 (MQ=17)
aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAATGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑Gt > 1:1438554/1‑100 (MQ=255)
aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑g < 2:209472/99‑1 (MQ=255)
aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑Gt > 1:1261948/1‑100 (MQ=255)
aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑Gt > 1:1831980/1‑100 (MQ=255)
ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAgg > 1:809208/1‑100 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGcc > 2:758725/1‑100 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGcc > 2:2545212/1‑100 (MQ=255)
ataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCTGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGcc > 1:117391/5‑100 (MQ=18)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTg > 2:511919/1‑100 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGa > 2:1838328/1‑100 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGa > 1:2364354/1‑100 (MQ=255)
aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGAt > 1:757542/1‑100 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATa > 2:742774/1‑100 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATa > 2:161066/1‑100 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATa < 2:1561342/100‑1 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGc > 1:672309/1‑100 (MQ=255)
gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCg < 1:422691/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgc > 2:537295/1‑100 (MQ=255)
cttttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCAGAGT‑‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAgcgc > 1:1474480/10‑100 (MQ=17)
attttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAATCGTGCTAATTCAATATATTGCAGAAA‑‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAgcgc > 2:2021847/10‑100 (MQ=17)
tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCAGGAA‑‑A‑‑‑CAC‑‑GTAGGCCTGATAAGCGAAGCGCAt > 2:815023/8‑100 (MQ=18)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 2:2191555/1‑100 (MQ=255)
ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAATCGTGCTAATTCAATATATTGCAGAAA‑‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATc > 1:13733/7‑100 (MQ=17)
gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAATCGTGCTAATTCAATATATTGCAGAAA‑‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg < 1:2021835/96‑1 (MQ=18)
gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGATCGAT‑‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:1290760/5‑100 (MQ=21)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGCAGGAT‑‑A‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:1006923/4‑100 (MQ=17)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑ATA‑‑T‑‑‑GAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcg > 1:1032087/3‑99 (MQ=21)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCAGGAG‑‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1654040/3‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGCA‑ATTCAA‑‑‑CTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGc > 1:410447/2‑100 (MQ=21)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCACCAT‑‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:588614/2‑100 (MQ=21)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:365478/1‑100 (MQ=255)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:118933/1‑100 (MQ=255)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCAGAGT‑‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1872026/1‑99 (MQ=17)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCAGGAA‑‑A‑‑‑CAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCag > 2:422792/1‑99 (MQ=18)
ccggataaggcgTTCACGCCTTATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑AAT‑‑C‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:2028248/9‑98 (MQ=18)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCACCAT‑‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:2089857/9‑98 (MQ=21)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCACCAT‑‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:955026/9‑98 (MQ=21)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGCAGGAT‑‑A‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:360834/9‑98 (MQ=18)
cGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttt < 2:1371691/100‑1 (MQ=255)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑GAATC‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 2:1591717/7‑98 (MQ=21)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑AAT‑‑TCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 2:841306/7‑97 (MQ=21)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑AAT‑‑TCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 1:733678/7‑97 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGAC‑‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1968722/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCATGAG‑‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1956352/7‑100 (MQ=17)
ggataaggcgTTCACGCAGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCAGGAG‑‑A‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttta > 1:1213401/7‑98 (MQ=18)
gataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGCAAGAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCacgctc > 2:1935684/6‑95 (MQ=18)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:2399014/100‑1 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:230715/100‑1 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:1090719/100‑1 (MQ=255)
taaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCAGAAA‑‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAGTtttgc > 2:306988/4‑100 (MQ=18)
gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:916956/100‑1 (MQ=255)
gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:1015627/100‑1 (MQ=255)
cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:843115/100‑1 (MQ=255)
cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCACTtttgcc > 2:674919/1‑99 (MQ=255)
ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt > 2:2523337/1‑100 (MQ=255)
gcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccttt > 1:203325/1‑100 (MQ=255)
ctttAACGCCTTATCCGGGCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:2347513/98‑1 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAGTTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATAtttccctttgc < 1:1359742/100‑1 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:1625384/100‑1 (MQ=255)
aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:2478723/1‑100 (MQ=255)
aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:2476843/1‑100 (MQ=255)
aaCGCCTTATCCGGCCTAC‑AAAATCGTACAAATTCAATACATTGCAGAGT‑‑T‑‑‑TTC‑‑GTAGGGCTGATAAGCGGAGCGCATCAGGCATGtttgtctttgccct > 1:1570042/1‑98 (MQ=18)
cgttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCTTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 2:2508572/97‑1 (MQ=255)
ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 2:933861/1‑100 (MQ=255)
|
TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGT > NC_000913/3705886‑3706081
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
