Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F232 I1 R1
|
72 |
114.8 |
5816246 |
94.5% |
5496352 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,648,144 |
(T)7→6 |
intergenic (‑356/‑384) |
dinQ ← / → arsR |
UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,648,138 | 0 | T | . | 99.0%
| 464.2
/ ‑2.5
| 104 | intergenic (‑350/‑390) | dinQ/arsR | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (60/43); total (61/43) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.45e-01 |
Only 100 of 118 total aligned reads displayed.
CAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCC > NC_000913/3648039‑3648233
|
aGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGGtt > 1:207777/1‑100 (MQ=255)
aGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGGtt < 2:2224132/100‑1 (MQ=255)
gTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGGttt > 2:1082047/1‑100 (MQ=255)
tGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGGtttttt < 2:2230893/100‑1 (MQ=255)
tGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGGtttttt < 1:2740365/100‑1 (MQ=255)
tGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGGtttttt > 2:2753463/1‑100 (MQ=255)
ctgTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGGtttttt < 2:309867/98‑1 (MQ=255)
ggTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGGtttttta < 2:858670/100‑2 (MQ=255)
gTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGGttttttag > 1:309863/1‑98 (MQ=255)
gTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGGttttttac > 2:2068286/1‑98 (MQ=255)
tATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGGttttttaca < 1:158012/100‑4 (MQ=255)
aGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCg > 1:636808/1‑100 (MQ=255)
gCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCgg > 2:2337683/1‑100 (MQ=255)
cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGa > 1:2656292/1‑100 (MQ=255)
cATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAACTCGG‑TTTTTTACATCCGGa > 1:1731021/1‑100 (MQ=255)
tGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTc > 1:354671/1‑100 (MQ=255)
tGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTc < 2:2719830/100‑1 (MQ=255)
gATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGCACCCAAAGCCGG‑TTTTTTACATCCGGAtt > 1:2010179/1‑99 (MQ=18)
tGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCgg > 2:1497035/1‑99 (MQ=255)
tGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGa > 1:2310410/1‑100 (MQ=255)
ttAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAg < 1:2711599/100‑1 (MQ=255)
tAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAgg < 2:2552582/100‑1 (MQ=255)
aGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTTGGACAAGGc > 2:930179/1‑100 (MQ=255)
aGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGc > 2:1595957/1‑100 (MQ=255)
aGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGc < 2:2099166/100‑1 (MQ=255)
atcttgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCtt < 1:761684/96‑1 (MQ=255)
tgatgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTa > 1:1125443/1‑100 (MQ=255)
atgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAat > 1:2570804/1‑100 (MQ=255)
atgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAat < 2:666939/100‑1 (MQ=255)
ggCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCAGACAAGGCTTAatat > 2:2855788/1‑100 (MQ=255)
gCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATg < 1:2369798/100‑1 (MQ=255)
cTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGa < 2:2622465/100‑1 (MQ=255)
tATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGAc > 2:523365/1‑100 (MQ=255)
tATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGAc < 1:2179470/100‑1 (MQ=255)
aTCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACg > 2:1213778/1‑100 (MQ=255)
aTCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACg < 1:1948492/100‑1 (MQ=255)
tctcACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGa > 1:2356110/1‑100 (MQ=255)
tctcACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGa < 2:636814/100‑1 (MQ=255)
tcACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATg > 1:589846/1‑100 (MQ=255)
cACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGa > 2:90422/1‑100 (MQ=255)
aCTCCAGTCATAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCTG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGAt < 1:497245/97‑1 (MQ=21)
aCTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGAc > 1:2463311/1‑100 (MQ=255)
tCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGAccc < 2:2726830/100‑1 (MQ=255)
ccAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGAccc < 2:1164071/99‑1 (MQ=255)
ccAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGAccc > 2:2374356/1‑99 (MQ=255)
aGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGt < 2:754089/100‑1 (MQ=255)
tCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGa > 1:2697393/1‑100 (MQ=255)
cAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGaa > 1:1663970/1‑100 (MQ=255)
agagCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGaaa > 1:1377666/1‑100 (MQ=255)
gagCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAg < 2:541743/100‑1 (MQ=255)
gagCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAg < 2:2637317/100‑1 (MQ=255)
gagCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAg < 1:1841954/100‑1 (MQ=255)
gCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGta < 1:1788064/100‑1 (MQ=255)
gCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGta < 1:1217932/100‑1 (MQ=255)
gCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGta > 2:914663/1‑100 (MQ=255)
gCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGta < 2:113039/100‑1 (MQ=255)
ccaccaACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGtat > 2:2602711/1‑100 (MQ=255)
ccaccaACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGtat > 1:1490253/1‑100 (MQ=255)
caccaACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGtata > 2:1011671/1‑100 (MQ=255)
ccaACTCAGGGGTGGAAAGTAAAAAACCG‑ACGCAAAGGCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGtatata < 2:1948481/100‑1 (MQ=37)
aaCTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATaaa > 1:1866082/1‑100 (MQ=255)
aaCTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATaaa > 1:1416681/1‑100 (MQ=255)
cTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATc > 1:619970/1‑100 (MQ=255)
cTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATc < 2:1993903/100‑1 (MQ=255)
cAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGt > 2:2108780/1‑100 (MQ=255)
aGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTc < 1:2753427/100‑1 (MQ=255)
aGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTc < 1:1497011/100‑1 (MQ=255)
gggCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCa > 2:946351/1‑100 (MQ=255)
ggCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCa < 1:1672536/99‑1 (MQ=255)
ggCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCAc > 1:1717121/1‑100 (MQ=255)
cTGGAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTg < 2:2610232/100‑1 (MQ=255)
ggAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCg < 1:1026982/100‑1 (MQ=255)
ggAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCg > 2:1716298/1‑100 (MQ=255)
gAAAGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGa > 2:1299973/1‑100 (MQ=255)
aaaGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGat < 2:2656327/100‑1 (MQ=255)
aaaGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGat < 1:2719468/100‑1 (MQ=255)
aaGTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGata > 2:1628825/1‑100 (MQ=255)
gTAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGatata > 2:2711450/1‑100 (MQ=255)
tAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGatatat > 2:2487559/1‑100 (MQ=255)
tAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGatatat > 1:2900306/1‑100 (MQ=255)
tAAAAAACCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACAATTACCCAGTGAAAGTATATAAATTGTCACTGCGaaatat > 2:2431704/1‑100 (MQ=38)
aaaaaaCCG‑ACGCAAAGTCGG‑TTTTTTACATCGGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGAtatata > 2:2758161/1‑100 (MQ=255)
aaaaaCCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATAc > 2:2690474/1‑100 (MQ=255)
aaaaCCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATAcc < 2:2666870/100‑1 (MQ=255)
aaCCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGa < 1:1011660/100‑1 (MQ=255)
aaCCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCCGACACGGCTTAATATGACGTTGACCCAGTAAAAGTATATAAATCGTGACTGCGATATATAccaa > 1:2427716/1‑98 (MQ=255)
aCCG‑ACGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGaa > 2:2414523/1‑100 (MQ=255)
ccG‑ACGCAAAGTCGGTTTTTTT‑TTTTTTTTTTCGGACAAGACGTAATATGACGATGACCCATTGAAAGTATATAAATCGTCACTGCGCTATATACCGacg > 1:1233686/1‑98 (MQ=255)
actttgcgTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGc > 2:38929/8‑100 (MQ=255)
cGCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGct > 1:2044727/1‑100 (MQ=255)
gCAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGctc > 2:51776/1‑100 (MQ=255)
cAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGctcc < 2:2830619/100‑1 (MQ=255)
cAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGctcc > 2:2759058/1‑100 (MQ=255)
cAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGctcc > 1:2742492/1‑100 (MQ=255)
cAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGctcc < 2:2380700/100‑1 (MQ=255)
cAAAGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGctcc > 1:2647845/1‑100 (MQ=255)
aaaGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGctccc > 2:545260/1‑100 (MQ=255)
aaGTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGctccct < 2:2145075/100‑1 (MQ=255)
gTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGctccctcc < 2:1490277/100‑1 (MQ=255)
gTCGG‑TTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGctccctcc > 1:1982474/1‑100 (MQ=255)
|
CAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCG‑ACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCC > NC_000913/3648039‑3648233
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
