Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F255 I0 R1 121 91.8 4500463 95.1% 4279940 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,249,628 G→A 71.8% G85D (GGC→GAC)  yqjD → membrane‑anchored ribosome‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,249,6280GA71.8% 96.5 / 52.5 76G85D (GGC→GAC) yqjDmembrane‑anchored ribosome‑binding protein
Reads supporting (aligned to +/- strand):  ref base G (11/10);  new base A (31/23);  total (42/34)
Fisher's exact test for biased strand distribution p-value = 7.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.79e-01

ATCGCCTGGGTGAAACCGGTGATGCCATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGCACAAGGGCCCGGTAAAAGCGTTCT  >  NC_000913/3249529‑3249726
                                                                                                   |                                                                                                  
aTCGCCTGGGTGAAACCGGTGATGCCATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTggg                                                                                                    <  2:411358/100‑1 (MQ=255)
aTCGCCTGGGTGAAACCGGTGATGCCATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTggg                                                                                                    <  2:2030187/100‑1 (MQ=255)
   gCCTGGGTGAAAGCGGTGATGCCATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACAt                                                                                                 >  1:1469987/1‑100 (MQ=255)
   gCCTGGGTGAAACCGGTGATGCCATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCAt                                                                                                 >  2:1775693/1‑100 (MQ=255)
      tGGGTGAAACCGGTGATGCCATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTgg                                                                                              >  2:1922965/1‑100 (MQ=255)
       gggTGAAACCGGTGATGCCATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGgc                                                                                             >  2:1677409/1‑100 (MQ=255)
       gggTGAAACCGGTGATGCCATTGCCAAACAAACCCGTGTAGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGgc                                                                                             >  1:1496898/1‑100 (MQ=255)
        ggTGAAACCGGTGATGCCATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGgcg                                                                                            <  2:749926/100‑1 (MQ=255)
         gTGAAACCGGTGATGCCATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGgcgc                                                                                           >  1:249148/1‑100 (MQ=255)
         gTGAAACCGGTGATGCCATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGgcgc                                                                                           <  2:379523/100‑1 (MQ=255)
          agAAACCGGTGATGCCATTGCCAAACAAACCCGTCTCGCGGCGACGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTgg                                                                                              >  2:550008/2‑96 (MQ=255)
           gAAACCGGTGATGCCATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTTGACGGGCGTGGACATTGGCGCTg                                                                                         <  1:2089523/100‑1 (MQ=255)
            aaaCCGGTGATGCCATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGGCGCTGc                                                                                        <  1:1381893/100‑1 (MQ=255)
            aaaCCGGTGATGCCATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTg                                                                                         >  1:1672589/1‑99 (MQ=255)
            aaaCCGGTGATGCCATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGc                                                                                        <  1:662390/100‑1 (MQ=255)
            aaaCCGGGGATGCCATTGCCAAACAAATCCGTGGCGCGGCGGCTCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGc                                                                                        <  2:1211663/100‑1 (MQ=255)
             aaCCGGTGATGCCATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGGCGCTGCa                                                                                       >  1:813785/1‑100 (MQ=255)
                       gCCATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAg                                                                             <  2:956339/100‑1 (MQ=255)
                        ccATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGGCGCTGCAATCGGTGTAGt                                                                            >  1:1740212/1‑100 (MQ=255)
                             gCCAAACAAACCCGTGTCGCGGCGTCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCg                                                                       >  1:1571896/1‑100 (MQ=255)
                             gCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGCTGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTc                                                                        >  2:784475/1‑99 (MQ=255)
                             gCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGGCGCTGCAATCGGTGTAGTGCTCg                                                                       >  2:1211605/1‑100 (MQ=255)
                             gCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGGCGCTGCAATCGATGTAGTGCTCg                                                                       >  1:320675/1‑100 (MQ=255)
                             gCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTc                                                                        >  1:337148/1‑99 (MQ=255)
                               caaacaaaCCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGc                                                                     <  1:891097/100‑1 (MQ=255)
                                 aacaaacaCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGGCGCTGCAATCGGTGTAGTGCTCGGCGt                                                                   >  1:1169871/1‑100 (MQ=255)
                                    aaacCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTct                                                                <  2:58213/100‑1 (MQ=255)
                                      acCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTctgc                                                              >  2:2140423/1‑100 (MQ=255)
                                       cccGTTTCGTTGCGGCGCGTGCGGTTGATTATGTGCGCGAAAATCCGTGGACGGGCTTTGTCATTGGCGCTGCAATCTGTTTAGTGCTCGGCGTTctgc                                                              <  2:296509/99‑1 (MQ=255)
                                       cccGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTctgc                                                              <  1:1659632/99‑1 (MQ=255)
                                       cccGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGACGTTctgct                                                             >  1:807187/1‑100 (MQ=255)
                                         cGTGTTGCGGCGGCGCGTGTCGATGAGTATGTGCGCGAAGATCCGTGGACGGGCGTGGACATTGGCGTTGCAATCGGTGTAGTGCTCGGCGTTct                                                                <  2:1012071/95‑1 (MQ=255)
                                              cgcgGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGcgt                                                      >  1:1065675/1‑100 (MQ=255)
                                               gcggcggcgCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGcgtc                                                     <  1:321623/100‑1 (MQ=255)
                                               gcggcggcgCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTcgcggc                                                     >  2:1895239/1‑98 (MQ=255)
                                               gcggcggcgCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGcgtc                                                     >  2:1365411/1‑100 (MQ=255)
                                                 ggcggcgCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGGCGCTGCAATCGATGTAGTGCTCGGCGTTCTGCTGTCGcgtcgt                                                   <  2:320676/100‑1 (MQ=255)
                                                 ggcggcgCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCCATCGGTGTAGTGCTCGGCGTTCTGCTGTCGcgtcgt                                                   >  1:1260180/1‑100 (MQ=255)
                                                   cggcgCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTa                                                 <  1:1777083/100‑1 (MQ=255)
                                                   cggcgCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTa                                                 <  2:1486186/100‑1 (MQ=255)
                                                     gcgcGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACTGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAAt                                               <  2:1245691/100‑1 (MQ=255)
                                                      cgcgTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAAtt                                              >  1:1543942/1‑100 (MQ=255)
                                                      cgcgTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAAtt                                              <  2:1483305/100‑1 (MQ=255)
                                                         gTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATg                                           <  1:1354638/100‑1 (MQ=255)
                                                          tGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATgg                                          >  1:2169062/1‑100 (MQ=255)
                                                           gCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGc                                         <  1:444532/100‑1 (MQ=255)
                                                            ccGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCg                                        >  1:1172698/1‑100 (MQ=255)
                                                            ccGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCg                                        <  2:2169047/100‑1 (MQ=255)
                                                              gATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGa                                      >  1:775171/1‑100 (MQ=255)
                                                              gATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGAACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTGGTTAATTATGGCGGa                                      <  2:1830979/100‑1 (MQ=255)
                                                                   gTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCCATCGGTGTATTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACt                                  >  1:75502/1‑99 (MQ=255)
                                                                   gTATGTGCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACtc                                 >  1:2067207/1‑100 (MQ=255)
                                                                    tATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACtca                                <  1:150859/100‑1 (MQ=255)
                                                                      tgtgCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACtcatc                              >  1:738266/1‑100 (MQ=255)
                                                                        tgCGCGAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCAc                            >  2:2123625/1‑100 (MQ=255)
                                                                          cgcgAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGc                          <  2:660340/100‑1 (MQ=255)
                                                                           gcgAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGca                         <  2:346785/100‑1 (MQ=255)
                                                                            cgAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGcac                        >  1:1989968/1‑100 (MQ=255)
                                                                            cgAAAATCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGATCTCGGCGTTCTCCGGTCGCTTCAATAAAAAAGGCGGACACTCATCACGcac                        >  2:1604901/1‑100 (MQ=255)
                                                                             cgaaaTCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGATCTGCTGTCGCGTCGTTAATTATGGCGGAAACTCATCACGcac                        >  1:2102586/3‑99 (MQ=255)
                                                                               aaaTCCGTGGACGGGCGTGGACATTGGCACTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGCACAAg                     <  2:1249497/100‑1 (MQ=255)
                                                                                aaTCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGCACAAgg                    <  2:2067193/100‑1 (MQ=255)
                                                                                aaTCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGCACAAgg                    <  2:242191/100‑1 (MQ=255)
                                                                                 aTCCGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGCACAAggg                   <  2:1421062/100‑1 (MQ=255)
                                                                                    cGTGGACGGGCGTGGGCATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCAAGCACAAGGGccc                <  1:1471410/100‑1 (MQ=255)
                                                                                    cGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGCACAAGGGccc                >  2:1936354/1‑100 (MQ=255)
                                                                                    cGTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGCACAAGGGccc                >  1:1350405/1‑100 (MQ=255)
                                                                                     gTGGACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGCACAAGGGCCCg               >  1:1170918/1‑100 (MQ=255)
                                                                                       ggACGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGCACAAGGGCCCgg              <  2:738266/99‑1 (MQ=255)
                                                                                       ggACGGGCGTAGACATTGACGCTGCAATCGGAGTAGTGCTCGGCGATATGCTGTCGCGTAGTTAATAATGGCGGACACTCATCACGCACAAGGGCCCg               >  2:493053/1‑98 (MQ=255)
                                                                                          cGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTTCTCGGCGTTCTGCTGTCCCTTCGTTAATTATGGAGGACACTCATCACGCACAAGGGCCCGGTaaa          >  2:1551483/1‑100 (MQ=255)
                                                                                          cGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGCACAAGGGCCCGGTaaa          >  2:1987786/1‑100 (MQ=255)
                                                                                          cGGGCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGCACAAGGGCCCGGTaaa          >  1:1370151/1‑100 (MQ=255)
                                                                                            ggCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGCACAAGGGCCCGGTAAAAg        <  1:2140438/100‑1 (MQ=255)
                                                                                             gCGTGGGCATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACCCATCACGCACAAGGGCCCGGTAAAAGc       >  1:1663747/1‑100 (MQ=255)
                                                                                             gCGTGGACATTGGCGCTGCAATCGGTGTAGTGTTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGCACAAGGGCCCGGTAAAAg        <  1:136738/99‑1 (MQ=255)
                                                                                             gCGTGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGCACAAGGGCCCGGTAAAAg        <  1:1834671/99‑1 (MQ=255)
                                                                                                tGGACATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGCACAAGGGCCCGGTAAAAGCGtt    >  1:597781/1‑100 (MQ=255)
                                                                                                  ggCATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGCACAAGGGCCCGGTAATAGCGTTCt  >  1:1554497/1‑100 (MQ=255)
                                                                                                   |                                                                                                  
ATCGCCTGGGTGAAACCGGTGATGCCATTGCCAAACAAACCCGTGTCGCGGCGGCGCGTGCCGATGAGTATGTGCGCGAAAATCCGTGGACGGGCGTGGGCATTGGCGCTGCAATCGGTGTAGTGCTCGGCGTTCTGCTGTCGCGTCGTTAATTATGGCGGACACTCATCACGCACAAGGGCCCGGTAAAAGCGTTCT  >  NC_000913/3249529‑3249726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A