Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F256 I1 R1 186 136.5 6958264 92.1% 6408561 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,352,460 T→G intergenic (+103/‑124) yjdJ → / → ghoS GNAT family putative N‑acetyltransferase/antitoxin of GhoTS toxin‑antitoxin pair; endonuclease for ghoT mRNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,352,4600TG99.1% 363.9 / NA 107intergenic (+103/‑124)yjdJ/ghoSGNAT family putative N‑acetyltransferase/antitoxin of GhoTS toxin‑antitoxin pair; endonuclease for ghoT mRNA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base G (61/45);  minor base C (1/0);  total (62/45)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 113 total aligned reads displayed.

AGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGA  >  NC_000913/4352364‑4352556
                                                                                                |                                                                                                
agTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTATGGGGATGCACAAAGAATGGGCAGAGAGCGCGgttt                                                                                               <  2:1769234/100‑1 (MQ=255)
agTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGgttt                                                                                               >  1:810441/1‑100 (MQ=255)
 gTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGgtttt                                                                                              >  2:1480976/1‑100 (MQ=255)
   aCAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGgtttttt                                                                                            >  2:1293197/1‑100 (MQ=255)
   aCAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGgtttttt                                                                                            >  2:2373988/1‑100 (MQ=255)
    cAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGGTGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTg                                                                                           <  2:72821/100‑1 (MQ=255)
    cAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTg                                                                                           <  1:2166285/100‑1 (MQ=255)
    cAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTg                                                                                           <  1:2699724/100‑1 (MQ=255)
    cAGAGTCACGATATTTTTCATTCGCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTg                                                                                           <  1:1320786/100‑1 (MQ=255)
       agTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTcc                                                                                        <  2:2170201/100‑1 (MQ=255)
          cACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGCATGGGCAGAGAGCGCGGTTTTTTGTCCCaa                                                                                     >  1:339283/1‑100 (MQ=255)
           aCGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAg                                                                                    >  1:2509093/1‑100 (MQ=255)
           aCGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAg                                                                                    >  2:1047720/1‑100 (MQ=255)
            cGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGt                                                                                   >  1:1433824/1‑100 (MQ=255)
             gATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTc                                                                                  <  1:1109504/100‑1 (MQ=255)
              atatTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCa                                                                                 >  1:2629900/1‑100 (MQ=255)
               tatTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCAt                                                                                >  2:2953381/1‑100 (MQ=255)
                tggctacATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATc                                                                               <  1:1540696/94‑1 (MQ=255)
                      cATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCttt                                                                         <  1:2928026/100‑1 (MQ=255)
                      cATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCttt                                                                         <  2:1512355/100‑1 (MQ=255)
                       aTTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTa                                                                        <  1:2373956/100‑1 (MQ=255)
                         tgtctaCGCGATGTGATGCAGGAGAGCATATCAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTGTTGTCCTAAGTCATCCCCTTTACt                                                                      <  1:1510187/98‑1 (MQ=255)
                         tctctcCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACt                                                                      <  1:3133133/100‑1 (MQ=255)
                              ccGCGATGTGATGCAGGAGAGCATCTGAAGTGTAGGTGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGc                                                                  <  1:2349789/99‑1 (MQ=255)
                              ccGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCa                                                                 >  1:1105043/1‑100 (MQ=255)
                                   aTGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCCCAAAGAATGGGCAGAGAGCTCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCaaaaaa                                                            <  1:1898350/100‑1 (MQ=255)
                                      tgATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAg                                                         >  1:2742629/1‑100 (MQ=255)
                                      tgATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAg                                                         >  2:2366735/1‑100 (MQ=255)
                                       gATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGAGCAGAGAGCGCGGCTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGa                                                        <  1:2462123/100‑1 (MQ=255)
                                        aTGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGaa                                                       >  1:2663071/1‑100 (MQ=255)
                                        aTGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGaa                                                       <  1:2643291/100‑1 (MQ=255)
                                        aTGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGaa                                                       >  2:1794735/1‑100 (MQ=255)
                                         tGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAat                                                      >  2:1647359/1‑100 (MQ=255)
                                          gCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGGGCAAAAAAAAGAata                                                     <  2:3002297/100‑1 (MQ=255)
                                           cAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAatat                                                    >  2:699544/1‑100 (MQ=255)
                                           cAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTGTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAatat                                                    >  2:3320888/1‑100 (MQ=255)
                                            aGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATAtc                                                   <  1:3311123/100‑1 (MQ=255)
                                             ggAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATAtct                                                  >  1:122472/1‑100 (MQ=255)
                                             ggAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATAtct                                                  >  2:699251/1‑100 (MQ=255)
                                               agagCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTcc                                                <  2:2005028/100‑1 (MQ=255)
                                                gagCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCt                                               <  2:810452/100‑1 (MQ=255)
                                                  gCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCtat                                             <  2:2742673/100‑1 (MQ=255)
                                                  gCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCtat                                             >  1:1222099/1‑100 (MQ=255)
                                                  gCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCtata                                            >  1:2531640/1‑100 (MQ=255)
                                                    aTCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTatat                                           >  2:1313219/1‑100 (MQ=255)
                                                    aTCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTatat                                           <  1:35920/100‑1 (MQ=255)
                                                      cTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGGTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATga                                         >  1:1244232/1‑100 (MQ=255)
                                                       tGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGTGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATgag                                        <  1:2852040/100‑1 (MQ=255)
                                                       tGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATgag                                        >  2:1467923/1‑100 (MQ=255)
                                                        gAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATgaga                                       >  1:3267981/1‑100 (MQ=255)
                                                        gAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATgaga                                       >  1:1915189/1‑100 (MQ=255)
                                                        gAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATgaga                                       >  2:191372/1‑100 (MQ=255)
                                                          aGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAat                                     >  1:3153132/1‑100 (MQ=255)
                                                           gggTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAatc                                    >  1:3380995/1‑100 (MQ=255)
                                                           gggTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAatc                                    >  1:2690527/1‑100 (MQ=255)
                                                           gggTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGCTTTTTTGTTTTAATTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATgaga                                       >  1:1862652/1‑97 (MQ=255)
                                                            ggTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAatca                                   >  1:1244676/1‑100 (MQ=255)
                                                            ggTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAatca                                   <  2:2061572/100‑1 (MQ=255)
                                                             gTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAatcat                                  >  1:2688621/1‑100 (MQ=255)
                                                              tAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAatcatc                                 <  1:3320302/100‑1 (MQ=255)
                                                               aGGGGGATGCACAAAGAATGGGCAGAGAGCGAGGGTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAatcatc                                 <  1:2390498/99‑1 (MQ=255)
                                                               aGGGGGATGCACAAAGAATCGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCTCAAAAAAAAAAAAAAAAAAGAATATCTCCTATATGAGAatcatc                                 <  1:3055905/99‑1 (MQ=255)
                                                                gggggATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCaa                               >  1:1906811/1‑100 (MQ=255)
                                                                gggggATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCaa                               >  1:572215/1‑100 (MQ=255)
                                                                gggggATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCaa                               >  1:1181344/1‑100 (MQ=255)
                                                                gggggATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCaa                               <  2:3173067/100‑1 (MQ=255)
                                                                gggggATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCaa                               >  1:153809/1‑100 (MQ=255)
                                                                  gggATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATTAGAATCATCAATc                             >  1:308515/1‑100 (MQ=255)
                                                                  gggATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATc                             >  2:2943209/1‑100 (MQ=255)
                                                                   ggATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCACAAAAAAGAATATCCCCTATATTAAAATCATCACTc                             >  1:3404420/1‑99 (MQ=255)
                                                                     aTGCACAAAGAATGGGCAAAGAACGAGGTTTTTTGTCCCAAGTCATCCTAAAAAAAAAAAAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCgg                           <  1:1580253/99‑1 (MQ=255)
                                                                        cacaAAGAATGGGCAGAGAGCGCGGTTTTTTTTTTTTTTTTATCCCCTTTACTGCGCAAAAAAAAGAATATCTCCTATATGAGAATAATCAATCGGGGtt                       >  1:1574466/1‑100 (MQ=255)
                                                                        cacaAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGtt                       >  2:841587/1‑100 (MQ=255)
                                                                        cacaAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGtt                       >  2:2823301/1‑100 (MQ=255)
                                                                         acaAAGAATGGGCATATACCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGtt                       <  1:3320837/99‑1 (MQ=255)
                                                                         acaAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTta                      >  1:85629/1‑100 (MQ=255)
                                                                          caAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGtt                       >  1:1961292/1‑98 (MQ=255)
                                                                            aaGAATGGGCAGAGAGCGCGGTTTTTTATCCCAAGTTATCCCCTAAAAAAAAAAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTtaata                   <  1:7565/100‑1 (MQ=255)
                                                                             aGAATGGGCAGAGAGCGCTGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTtaata                   <  2:2593513/99‑1 (MQ=255)
                                                                                aTGGGCAGAGAGCGCGGTTTTTTGTACTAAGTCATCGCCTTTACTGAGCGAGAGAAAGATTATCTCATATATGAGAATAATCAATAGGGGTTAATAAGtt               >  1:766034/1‑100 (MQ=255)
                                                                                aTGGGCAGAGAACGCGGTTTTTTGTCCCAATTCATCCACTAAAAAAAAAAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGtt               <  1:893371/100‑1 (MQ=255)
                                                                                 tGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGttt              <  2:2824966/100‑1 (MQ=255)
                                                                                  gggCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTCCTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGttt              >  2:1543127/1‑99 (MQ=255)
                                                                                  gggCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGtttt             >  2:1085336/1‑100 (MQ=255)
                                                                                   ngCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGATTTg            >  1:1529631/2‑100 (MQ=255)
                                                                                   ggCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTg            >  2:488863/1‑100 (MQ=255)
                                                                                   ggCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTg            <  1:1794710/100‑1 (MQ=255)
                                                                                    gCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGc           >  1:2132780/1‑100 (MQ=255)
                                                                                    gCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGc           >  2:24995/1‑100 (MQ=255)
                                                                                    gCAGAGAGCGCGGATTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGc           >  2:544353/1‑100 (MQ=255)
                                                                                     catagagCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCg          <  2:1576905/97‑1 (MQ=255)
                                                                                     cAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCg          >  1:2100080/1‑100 (MQ=255)
                                                                                     cAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCg          >  2:2030894/1‑100 (MQ=255)
                                                                                     cAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCg          >  1:3215355/1‑100 (MQ=255)
                                                                                      agagagCGCGGTTTTTTGTCTCAAGTCAAAAAATAAAAAAAAAAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCg          <  1:3192127/99‑1 (MQ=255)
                                                                                       gacagCGCGGTTTTTTGTCCCAAGTCATCCCATAAAAAAAAAAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCg          <  1:798996/95‑1 (MQ=255)
                                                                                          agCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTcccc     >  2:169174/1‑100 (MQ=255)
                                                                                           gcgcGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCa    <  1:699242/100‑1 (MQ=255)
                                                                                             gcgGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCaga  >  2:1893080/1‑100 (MQ=255)
                                                                                             gcgGTTTTTTATCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCCTCTATCGGGGTTAATAAGTTTTGCGTCCCCaga  <  1:2290419/100‑1 (MQ=255)
                                                                                                |                                                                                                
AGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGA  >  NC_000913/4352364‑4352556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A