Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F142 I0 R1 175 91.2 4812830 94.5% 4548124 99.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,352,460 T→G 19.5% intergenic (+103/‑124) yjdJ → / → ghoS GNAT family putative N‑acetyltransferase/antitoxin of GhoTS toxin‑antitoxin pair; endonuclease for ghoT mRNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,352,4600TG19.5% 255.0 / 60.7 122intergenic (+103/‑124)yjdJ/ghoSGNAT family putative N‑acetyltransferase/antitoxin of GhoTS toxin‑antitoxin pair; endonuclease for ghoT mRNA
Reads supporting (aligned to +/- strand):  ref base T (55/43);  new base G (16/8);  total (71/51)
Fisher's exact test for biased strand distribution p-value = 4.89e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01

Only 100 of 129 total aligned reads displayed.

AGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCG  >  NC_000913/4352362‑4352559
                                                                                                  |                                                                                                    
 gagTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGtt                                                                                                     <  1:1275630/99‑1 (MQ=255)
  agTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGtttt                                                                                                   <  1:1359331/100‑1 (MQ=255)
    tACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGtttttt                                                                                                 >  2:895817/1‑100 (MQ=255)
    tACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGtttttt                                                                                                 <  2:1524781/100‑1 (MQ=255)
      cAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTg                                                                                               >  1:670991/1‑100 (MQ=255)
       agagTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGt                                                                                              <  2:505723/100‑1 (MQ=255)
        gagTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTc                                                                                             <  2:1700164/100‑1 (MQ=255)
        gagTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTc                                                                                             >  1:228322/1‑100 (MQ=255)
          gTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTccc                                                                                           >  2:1031073/1‑100 (MQ=255)
            cACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCaa                                                                                         >  1:124148/1‑100 (MQ=255)
            cACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCaa                                                                                         >  1:922536/1‑100 (MQ=255)
            cACGATACTTTTCATTCTCTCCACGATGTGAAGAAGGAGAGCATCTGAAGGTTAGGGGGATAGACAAAGAATGGGCAGAGAGCGCGgttttttttttcaa                                                                                         >  2:590502/1‑93 (MQ=255)
             aCGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAg                                                                                        <  2:567780/100‑1 (MQ=255)
             aCGATATTTTTCATTCTCTCCAAGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTTTCCCa                                                                                          >  2:1368159/1‑98 (MQ=255)
              cGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGt                                                                                       >  2:1339306/1‑100 (MQ=255)
               gATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTc                                                                                      <  2:2123693/100‑1 (MQ=255)
                atatTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCa                                                                                     >  1:2340376/1‑100 (MQ=255)
                 tatTTTTCATTCTCTCCGCGATGTGATGCAGGTGCGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGt                                                                                       <  1:1953124/97‑1 (MQ=255)
                  atTTTTCATTCTCTTCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGCTGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATc                                                                                   >  2:2378204/1‑100 (MQ=255)
                   tttttCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATc                                                                                   <  1:1879330/99‑1 (MQ=255)
                    ttttCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATccc                                                                                 >  2:1425070/1‑100 (MQ=255)
                     tttCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATcccc                                                                                <  1:294022/100‑1 (MQ=255)
                       tCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCtt                                                                              <  1:1789744/100‑1 (MQ=255)
                       tCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCtt                                                                              <  1:1735606/100‑1 (MQ=255)
                         aTTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCttt                                                                             <  1:174716/99‑1 (MQ=255)
                          ttCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGGTGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTAc                                                                           >  2:1935555/1‑100 (MQ=255)
                            ctctcCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTg                                                                         >  1:2104441/1‑100 (MQ=255)
                              ctcCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAg                                                                       <  2:2104418/100‑1 (MQ=255)
                              ctcCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAg                                                                       <  2:209396/100‑1 (MQ=255)
                              ctcCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAg                                                                       <  1:243908/100‑1 (MQ=255)
                              ctcCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAg                                                                       <  1:997367/100‑1 (MQ=255)
                              ctcCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAg                                                                       <  2:1289208/100‑1 (MQ=255)
                               tcCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCttt                                                                             >  2:1168936/1‑93 (MQ=255)
                                  gcgATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑aaa                                                                  >  1:627602/1‑100 (MQ=255)
                                   cgATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGGTGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑aaaa                                                                 >  2:484729/1‑100 (MQ=255)
                                      tgtgATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑aaaaaaa                                                              <  1:14498/100‑1 (MQ=255)
                                        tgATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAg                                                            <  1:2337479/100‑1 (MQ=255)
                                        tgATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAg                                                            <  1:943540/100‑1 (MQ=255)
                                         gATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGa                                                           >  2:2345140/1‑100 (MQ=255)
                                           tGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAat                                                         >  1:1584671/1‑100 (MQ=255)
                                           tGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAat                                                         >  1:1584662/1‑100 (MQ=255)
                                            gCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAata                                                        >  2:754105/1‑100 (MQ=255)
                                            gCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCACCTTTACTGAGC‑AAAAAAAAGAata                                                        >  2:853746/1‑100 (MQ=255)
                                             cAGGAGAGCATCTGAAGAGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTCAGC‑AAAAAAAAGAatat                                                       >  2:829052/1‑100 (MQ=255)
                                              aGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAat                                                         <  1:92749/97‑1 (MQ=255)
                                              aGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATAtc                                                      >  1:1130335/1‑100 (MQ=255)
                                               ggAGAGCATCTGAAGAGTAGAGGGATACACAAAGAATGGGCAGAGAGCGCGGTCTTTTGTCCCAAGTCATACACTTTACTGAGC‑AAAAAAAAGAATAtct                                                     >  2:868378/1‑100 (MQ=255)
                                                 agagCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTcc                                                   >  1:727977/1‑100 (MQ=255)
                                                   agCATCTGAAGGGTAGGGGGATGCACAAAGAATCGGCAAAGATCGCGTTTTTTTGTCCCAAGTCATCCTCTAAAAAAAAA‑AAAAAAAAGAATATCTCCta                                                 <  2:1322229/100‑1 (MQ=255)
                                                    gCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCtat                                                >  2:978892/1‑100 (MQ=255)
                                                     cATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCtata                                               >  2:92981/1‑100 (MQ=255)
                                                     cATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTAATGAGA‑AAAAAAAAGAATATCTCCtata                                               <  2:993965/100‑1 (MQ=255)
                                                       tCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATg                                             >  2:2242243/1‑100 (MQ=255)
                                                       tCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATg                                             >  2:1183427/1‑100 (MQ=255)
                                                       tCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATg                                             >  2:1887976/1‑100 (MQ=255)
                                                       tCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATg                                             <  1:1721976/100‑1 (MQ=255)
                                                         tGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATtag                                           >  1:101560/1‑100 (MQ=255)
                                                         tGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATgag                                           <  1:255341/100‑1 (MQ=255)
                                                          gAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATgaaa                                          >  2:1141199/1‑98 (MQ=255)
                                                          gAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGA‑AAAAAAAAGAATATCTCCTATATgaga                                          >  2:827690/1‑100 (MQ=255)
                                                          gAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATgaga                                          >  2:1676534/1‑100 (MQ=255)
                                                            aGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAat                                        >  1:1369108/1‑100 (MQ=255)
                                                             gggTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAatc                                       >  2:2201474/1‑100 (MQ=255)
                                                               gTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAatcat                                     >  2:299163/1‑100 (MQ=255)
                                                                  gggggATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCaa                                  >  1:957914/1‑100 (MQ=255)
                                                                  gggggATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCaa                                  >  1:1543257/1‑100 (MQ=255)
                                                                       aTGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCggg                             <  1:786171/100‑1 (MQ=255)
                                                                       aTGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCggg                             <  2:727969/100‑1 (MQ=255)
                                                                        tGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAAt                                 >  1:867375/1‑95 (MQ=255)
                                                                        tGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCgggg                            >  1:1835261/1‑100 (MQ=255)
                                                                         tcacaAAGAATGGGCAGAAAGCACATTCTATTTTCCCAAGTTATTACCTTTGCTGAGC‑AAAAAAAATAATATGTAATATATGAAAATAATAAATCgggg                            >  2:1016970/2‑99 (MQ=255)
                                                                         gCACAAAGAATGGGCAGAGAGCTCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCgggg                            <  2:1355468/99‑1 (MQ=255)
                                                                         gCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGt                           >  1:816016/1‑100 (MQ=255)
                                                                         gCACAAAGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGGATATCTCCTATATGAGAATCATCAATCGGGGt                           <  2:1876356/100‑1 (MQ=255)
                                                                          cacaAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAGAAAAGACTATCTCCTATATGAGAATCATCAATCGGGGtt                          >  2:1686444/1‑100 (MQ=255)
                                                                          cacaAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCACCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGtt                          <  2:853466/100‑1 (MQ=255)
                                                                             aaaGAATGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCACTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGtt                          <  2:922102/97‑1 (MQ=255)
                                                                              aaGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTtaata                      >  1:1353483/1‑100 (MQ=255)
                                                                               aGAATGGTGAGAGAGGTTGTTTTTTTTTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTTTTATATGATATTCTTCAATCGGGGTtaataa                     <  2:384181/100‑1 (MQ=255)
                                                                                   tGGGCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGttt                 >  1:1006090/1‑100 (MQ=255)
                                                                                    gggCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGtttt                >  1:1192825/1‑100 (MQ=255)
                                                                                     ggCAGAGAGTGCGTTTTTTTGTCCCAAGTTATCCCCTAAAAAAAAA‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGtttt                <  2:638720/99‑1 (MQ=255)
                                                                                     ggCAGAGAGCGCGTGTTTTTGTCCCAAGTCAGCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTg               <  2:2082535/100‑1 (MQ=255)
                                                                                     ggCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGtttt                >  2:615236/1‑99 (MQ=255)
                                                                                     ggCAGAGAGCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTg               >  1:1768928/1‑100 (MQ=255)
                                                                                       cAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCg             <  1:1980966/100‑1 (MQ=255)
                                                                                       cAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCg             <  1:881166/100‑1 (MQ=255)
                                                                                        agatagCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTg               <  1:1811368/98‑1 (MQ=255)
                                                                                         gagagCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTc           >  1:1822301/1‑100 (MQ=255)
                                                                                         gagagCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTc           >  1:793397/1‑100 (MQ=255)
                                                                                          agagCGCGGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTcc          <  1:652325/100‑1 (MQ=255)
                                                                                           gagCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTccc         >  1:1494069/1‑100 (MQ=255)
                                                                                            agCGCGTTTTTTTGTCCCAAGTCATCACCTTTACTGATC‑AAAAAAAAGAATATCTCCTATATTAGAATCATCAATCGGGGTTAATAAGTTTTGCGTcccc        <  2:535564/100‑1 (MQ=255)
                                                                                             gcgcGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCa       >  2:742696/1‑100 (MQ=255)
                                                                                             gcgcGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCa       >  1:528080/1‑100 (MQ=255)
                                                                                              cgcgTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCag      >  2:360686/1‑100 (MQ=255)
                                                                                               gcgGTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCaga     >  1:1465324/1‑100 (MQ=255)
                                                                                                cgTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCagag    >  1:116643/1‑100 (MQ=255)
                                                                                                cgTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCACCagag    >  2:1092070/1‑100 (MQ=255)
                                                                                                  tttttttGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCg  <  1:2295732/100‑1 (MQ=255)
                                                                                                  |                                                                                                    
AGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCG  >  NC_000913/4352362‑4352559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A