Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F1 I2 R1 780 68.3 3343050 93.5% 3125751 102.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,240,754 (C)5→6 coding (915/1041 nt) galS ← galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor, mgl operon transcriptional repressor, autorepressor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,240,7491.C98.6% 246.7 / ‑3.5 69coding (920/1041 nt)galSgalactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor, mgl operon transcriptional repressor, autorepressor
Reads supporting (aligned to +/- strand):  ref base . (0/1);  new base C (32/36);  total (32/37)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01

AGATTGAAAGCGGTTACATCGCCTGATTTGTTGAGTTAGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTG‑CCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCGATGGGAATATCATCGAAACCGATGATTGAGAGATGTAA  >  NC_000913/2240615‑2240876
                                                                                                                                       |                                                                                                                                
aGATTGAAAGCGGTTACATCGCCTGATTTGTTGAGTTAGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTG‑cccc                                                                                                                              <  2:549173/139‑1 (MQ=255)
aGATTGAAAGCGGTTACATCGCCTGATTTGTTGAGTTAGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTG‑cccc                                                                                                                              <  2:909308/139‑1 (MQ=255)
    tGAAAGCGGTTACATCGCCTGATTTGTTGAGTTAGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTG‑cccc‑cctg                                                                                                                         >  2:470720/1‑136 (MQ=255)
    tGAAAGCGGTTACATCGCCTGA‑TTGTTGAGTTAGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTG‑cccc‑cctgc                                                                                                                        >  1:1569283/1‑135 (MQ=255)
     gAAAGCGGTTACATCGCCTGATTTGTTGAGTTAGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTG‑cccc‑cctgc                                                                                                                        <  1:470720/139‑5 (MQ=255)
      aaaGCGGTTACATCGCCTGATTTGTTGAGTTAGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTG‑cccc‑cctgca                                                                                                                       >  2:1405305/1‑134 (MQ=255)
            gTTACATCGCCTGATTTGTTGAGTTAGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCa                                                                                                                  >  1:1481381/1‑139 (MQ=255)
               aCATCGCCTGATTTGTTGAGTTAGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGtt                                                                                                               <  2:1008486/139‑1 (MQ=255)
                 aTCGCCTGATTTGTTGAGTTAGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCg                                                                                                             <  2:357912/139‑1 (MQ=255)
                      cTGATTTGTTGAGTTAGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGc                                                                                                        >  1:265220/1‑139 (MQ=255)
                              ttgAGTTAGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCctgctg                                                                                                                                   >  2:1410745/1‑105 (MQ=255)
                              ttgAGTTAGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCctgctg                                                                                                                                   <  1:1410745/105‑1 (MQ=255)
                               tgAGTTAGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGc                                                                                               >  1:1354614/1‑139 (MQ=255)
                                   ttAGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCAtt                                                                                           <  2:265220/139‑1 (MQ=255)
                                     aGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGtt                                                                                                               >  1:361325/1‑117 (MQ=255)
                                     aGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGtt                                                                                                               <  2:361325/117‑1 (MQ=255)
                                       tGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAg                                                                                       <  1:454276/139‑1 (MQ=255)
                                         aTCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCa                                                                                     <  2:189599/139‑1 (MQ=255)
                                           cgccgccgcATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCctgctg                                                                                                                                   <  1:820231/92‑1 (MQ=255)
                                           cgccgccgcATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCctgctg                                                                                                                                   >  2:820231/1‑92 (MQ=255)
                                           cgccgccgcATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTc                                                                                                 >  2:1004052/1‑125 (MQ=255)
                                           cgccgccgcATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTc                                                                                                 <  1:1004052/125‑1 (MQ=255)
                                           cgccgccgcATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAg                                                                                       <  2:649119/135‑1 (MQ=255)
                                           cgccgccgcATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAg                                                                                       >  1:649119/1‑135 (MQ=255)
                                             ccgccgcATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCg                                                                                                             >  1:1553336/1‑111 (MQ=255)
                                             ccgccgcATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCg                                                                                                             <  2:1553336/111‑1 (MQ=255)
                                               gccgcATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGa                                                                               <  2:1569283/139‑1 (MQ=255)
                                                      tCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCa                                                                        <  2:1481381/139‑1 (MQ=255)
                                                      tCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCa                                                                        <  1:1405305/139‑1 (MQ=255)
                                                      tCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCa                                                                        <  2:154683/139‑1 (MQ=255)
                                                        tGGCGTGTTGCGACAGACTGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAg                                                                                                                 >  2:97363/1‑96 (MQ=255)
                                                        tGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAg                                                                                                                 >  2:1160401/1‑96 (MQ=255)
                                                        tGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAg                                                                                                                 <  1:97363/96‑1 (MQ=255)
                                                        tGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAg                                                                                                                 <  1:1160401/96‑1 (MQ=255)
                                                        tGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTACCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACg                                                                      >  1:392658/1‑139 (MQ=255)
                                                             tgtTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGt                                                                 >  2:834955/1‑139 (MQ=255)
                                                              gtTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTG‑CCCCGCTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGtt                                                                <  1:668952/139‑1 (MQ=255)
                                                                tGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCAtt                                                                                           <  1:551764/110‑1 (MQ=255)
                                                                tGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCAtt                                                                                           >  2:551764/1‑110 (MQ=255)
                                                                tGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCa                                                                        <  2:1328780/129‑1 (MQ=255)
                                                                tGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCa                                                                        >  1:1328780/1‑129 (MQ=255)
                                                                  cGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTG‑cc                                                                                                                                <  2:1375928/71‑1 (MQ=255)
                                                                  cGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTG‑cc                                                                                                                                >  1:1375928/1‑71 (MQ=255)
                                                                    aCAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGGTCAATATTGCCTGCTG‑ccc                                                                                                                               <  2:1114621/70‑1 (MQ=255)
                                                                    aCAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGGTCAATATTGCCTGCTG‑ccc                                                                                                                               >  1:1114621/1‑70 (MQ=255)
                                                                      aGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCgg                                                        <  1:1390751/139‑1 (MQ=255)
                                                                       gAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCggg                                                       <  2:767226/139‑1 (MQ=255)
                                                                        aaTGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCaa                                                                                    >  2:1337227/1‑109 (MQ=255)
                                                                        aaTGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCaa                                                                                    <  1:1337227/109‑1 (MQ=255)
                                                                               aCGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCa                                                                        >  2:489392/1‑114 (MQ=255)
                                                                               aCGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCa                                                                        <  1:489392/114‑1 (MQ=255)
                                                                                  cACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCa                                                                        >  1:1531765/1‑111 (MQ=255)
                                                                                  cACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCa                                                                        <  2:1531765/111‑1 (MQ=255)
                                                                                        cGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCGAt                                      <  2:392658/139‑1 (MQ=255)
                                                                                             gCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGa                                                                                         <  2:572135/83‑1 (MQ=255)
                                                                                             gCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGa                                                                                         >  1:572135/1‑83 (MQ=255)
                                                                                             gCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCgg                                                        >  1:894693/1‑116 (MQ=255)
                                                                                             gCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCgg                                                        <  2:894693/116‑1 (MQ=255)
                                                                                                 aaaaCAGTGGCTGGCACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCGATGGGAATatc                             >  1:181967/1‑139 (MQ=255)
                                                                                                        tggctggcACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCGATGGGAATATCATCGaaa                      >  2:349486/1‑139 (MQ=255)
                                                                                                          gctggcACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCGATGGGAATATCATCGAAAcc                    >  2:1360615/1‑139 (MQ=255)
                                                                                                           ctggcACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCGATGGGAATATCATCGAAACCg                   >  2:822989/1‑139 (MQ=255)
                                                                                                             ggcACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTg                                                           >  2:886998/1‑97 (MQ=255)
                                                                                                             ggcACGAGGATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTg                                                           <  1:886998/97‑1 (MQ=255)
                                                                                                                    ggATCAATATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCGATGGGAATATCATCGAAACCGATGATTgag          <  2:181967/139‑1 (MQ=255)
                                                                                                                         aaTATTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCGATGGGAATATCATCGAAACCGATGATTGAGAGATg     >  1:1083244/1‑139 (MQ=255)
                                                                                                                          atatTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCGATGGGAATATCATCg                         >  2:1336584/1‑118 (MQ=255)
                                                                                                                          atatTGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCGATGGGAATATCATCg                         <  1:1336584/118‑1 (MQ=255)
                                                                                                                          atagTGCCTGCAGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCGATGGGAATATCATCGAAACCGATGATTGAGAGATGt    <  2:1083244/139‑1 (MQ=255)
                                                                                                                              tGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGc                                                                                               >  2:560140/1‑44 (MQ=255)
                                                                                                                              tGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGc                                                                                               <  1:560140/44‑1 (MQ=255)
                                                                                                                              tGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGgt                                                  <  1:1364001/89‑1 (MQ=255)
                                                                                                                              tGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGgt                                                  >  2:1364001/1‑89 (MQ=255)
                                                                                                                              tGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCGATGGGAATATCATCGAAACCGATGATTgag          >  1:11256/1‑129 (MQ=255)
                                                                                                                              tGCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCGATGGGAATATCATCGAAACCGATGATTgag          <  2:11256/129‑1 (MQ=255)
                                                                                                                               gCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCg                                        >  1:1010151/1‑98 (MQ=255)
                                                                                                                               gCCTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCg                                        <  2:1010151/98‑1 (MQ=255)
                                                                                                                                ccTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGa                                                                               <  2:339063/58‑1 (MQ=255)
                                                                                                                                ccTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGa                                                                               >  1:339063/1‑58 (MQ=255)
                                                                                                                                ccTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCggg                                                       >  1:98977/1‑82 (MQ=255)
                                                                                                                                ccTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCggg                                                       <  2:98977/82‑1 (MQ=255)
                                                                                                                                ccTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCGATGGGAATATCATCGAAACCGATGATTGAGAGATGTaa  <  2:1327817/135‑1 (MQ=255)
                                                                                                                                ccTGCTGCCCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCGATGGGAATATCATCGAAACCGATGATTGAGAGATGTaa  >  1:1327817/1‑135 (MQ=255)
                                                                                                                                       |                                                                                                                                
AGATTGAAAGCGGTTACATCGCCTGATTTGTTGAGTTAGTGATCGCCGCCGCATTCTGGCGTGTTGCGACAGAATGGCGACGCACTAACGTCGGCATAAAACAGTGGCTGGCACGAGGATCAATATTGCCTGCTG‑CCCC‑CTGCAAGGCCAGTTCGGTGGCTAATTTCGCCATTGAAGCAATGGGATAACGCACGGTCGTTAATTGCGGGTCGGTGTAACGGGCGATGGGAATATCATCGAAACCGATGATTGAGAGATGTAA  >  NC_000913/2240615‑2240876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A