Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F21 I0 R1 50 53.6 2034412 90.9% 1849280 142.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,114,431 G→A 100% N14N (AAC→AAT)  fpr ← flavodoxin/ferredoxin‑NADP(+) reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,114,4310GA100.0% 211.7 / ‑6.7 74N14N (AAC→AAT) fprflavodoxin/ferredoxin‑NADP(+) reductase
Reads supporting (aligned to +/- strand):  ref base G (1/0);  major base A (40/31);  minor base C (1/0);  total (42/32)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAGTTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGATCAAATCAAT  >  NC_000913/4114292‑4114569
                                                                                                                                           |                                                                                                                                          
gATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTc                                                                                                                                         >  1:964002/1‑143 (MQ=255)
gATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGGAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTc                                                                                                                                         >  2:260493/1‑143 (MQ=255)
 aTTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCt                                                                                                                                        <  2:591436/143‑1 (MQ=255)
  ttATCGGGCGAGTTTACATAGGAGTACGCGGGCTGGAGGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTg                                                                                                                                       <  2:444805/143‑1 (MQ=255)
    aTCGGGCGGGTGTACATAGGAGTCGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCATGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCa                                                                                                                                     <  2:355405/143‑1 (MQ=255)
    aTCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCa                                                                                                                                     >  1:906344/1‑143 (MQ=255)
    aTCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCa                                                                                                                                     >  1:344933/1‑143 (MQ=255)
         gCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTa                                                                                                                                <  1:595862/143‑1 (MQ=255)
             gTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGa                                                                                                                            >  1:795523/1‑143 (MQ=255)
                    tAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGAAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGcc                                                                                                                     <  1:238447/143‑1 (MQ=255)
                     aGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCt                                                                                                                    <  1:793078/143‑1 (MQ=255)
                     aGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCt                                                                                                                    >  1:674933/1‑143 (MQ=255)
                     aGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCt                                                                                                                    >  1:582354/1‑143 (MQ=255)
                     aGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCACGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCCGTTCTGCACTATAGTGACTTTGCCt                                                                                                                    >  1:250901/1‑143 (MQ=255)
                     aGGAGTACGCGCGCGGGACGCGTTCGCGGTCGATTTCGAGGTCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACTGGCGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCt                                                                                                                    <  2:915026/143‑1 (MQ=255)
                         gTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTa                                                                                                                <  1:841903/143‑1 (MQ=255)
                           aGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTAcc                                                                                                              <  2:697113/143‑1 (MQ=255)
                             gcgcgcTGGACGCGTTCGCCGTCGATTTCAAGGCAAACCGTGGTAAATCGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTGGGGCCGATGCTGCACTGGAGAGAGTTTGCGTGTTACGCa                                                                                                            >  2:991914/1‑143 (MQ=255)
                                cgcTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATc                                                                                                         >  1:419650/1‑143 (MQ=255)
                                  ctctaCGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAg                                                                                                       <  1:3612/139‑1 (MQ=255)
                                   tGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAACCAGc                                                                                                      >  2:675561/1‑143 (MQ=255)
                                      aCGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTCAACAGGGCGCAAGACCAATTCTGCACTTTAGTGACTTTGCCTGTTGCCCAACCAGCCAt                                                                                                   >  2:760013/1‑143 (MQ=255)
                                        gcgGTCGCCGGCGATTTCAAGGCCACGGTTGGTTAATTGTCCGGCGGTAACCGGCAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATCCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGt                                                                                                 <  2:671066/143‑1 (MQ=255)
                                          gTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGttt                                                                                               >  1:883592/1‑143 (MQ=255)
                                           ttCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGtttt                                                                                              >  2:132024/1‑143 (MQ=255)
                                            tCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACGAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGttttt                                                                                             >  2:915579/1‑143 (MQ=255)
                                              gCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAAt                                                                                                          >  1:835616/1‑128 (MQ=255)
                                              gCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAAt                                                                                                          <  2:835616/128‑1 (MQ=255)
                                                cGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTcc                                                                                         >  1:933243/1‑143 (MQ=255)
                                                  tCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTg                                                                                       <  1:947925/143‑1 (MQ=255)
                                                    gATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGtt                                                                                     >  2:601733/1‑143 (MQ=255)
                                                      tttCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGtttt                                                                                   >  1:6180/1‑143 (MQ=255)
                                                      tttCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGtttt                                                                                   >  2:861847/1‑143 (MQ=255)
                                                        tCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTttga                                                                                 >  2:473174/1‑143 (MQ=255)
                                                          aaGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACAGAAGCACGGGGGCGTGAACGGTGAGACGAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCGGGTAGCCAATCAGCCACGTGTTTCTCCTGTTttgatt                                                                               >  2:463433/1‑143 (MQ=255)
                                                           aGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGATttgattg                                                                              >  2:148663/1‑143 (MQ=255)
                                                                aaGCTTGGTAAATTGCCCGGCGGTAACCGGAAGCACGGGGGCGTGAAAGGTGTAGGTAATCAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTg                                                                         <  1:230936/143‑1 (MQ=255)
                                                                   cTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCt                                                                      >  2:639311/1‑143 (MQ=255)
                                                                      ggTAAATTGCCCGGCGGGAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTAt                                                                   <  2:403639/143‑1 (MQ=255)
                                                                       gTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATc                                                                  >  1:95791/1‑143 (MQ=255)
                                                                       gTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATc                                                                  >  1:22354/1‑143 (MQ=255)
                                                                        tAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGCCTTGCCTTATCt                                                                 >  2:391543/1‑143 (MQ=255)
                                                                        tAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTACACTGCTGTACTTGAGTGACGTTGCCTGTTACCCAATCAGCGATGTTTTTCTCCTGTTTTGATCGACTTGCCtggtct                                                                 >  1:908585/1‑138 (MQ=255)
                                                                          atttGCCCGGCTGTTTACGTTAGCATGGTGGCGTGGACGGGGAGACTACACAGGGCGTCGGTCCAAGTCGGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTc                                                               <  1:251473/141‑1 (MQ=255)
                                                                           aTTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGCTCGACTTGCCTTATCTTCg                                                              >  2:965495/1‑143 (MQ=255)
                                                                           aTTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCATGTTACCCAATCAGCCATGTCTTTCTCCTGTTTTGATTGACTCGCCTTAGCTTCg                                                              >  2:897971/1‑143 (MQ=255)
                                                                             tGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGtt                                                            >  1:602460/1‑143 (MQ=255)
                                                                                 cggcggTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTcc                                                        <  1:107770/143‑1 (MQ=255)
                                                                                 cggcggTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGAGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCACTCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTcc                                                        >  1:624414/1‑143 (MQ=255)
                                                                                    cggTGAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGaa                                                     <  2:334217/143‑1 (MQ=255)
                                                                                    cggTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGaa                                                     <  1:260493/143‑1 (MQ=255)
                                                                                    cggTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTGTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGaa                                                     <  1:728060/143‑1 (MQ=255)
                                                                                          aCGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTCCCCCATCCCCCATTTTTTTCTCCTGCTTTGATTTACTTGCCTTAACTTCGTACACCGAACaaaaa                                               >  1:846985/1‑143 (MQ=255)
                                                                                           cGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCAGAaaaaaaaa                                              <  2:866498/143‑1 (MQ=255)
                                                                                              aaGCACGGGGGCGTGAACGGTGAGACTAATCAGGGCGTCGGTGCAATTCTTCACTTTAGTGACTTTGCCTGTTACGCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAAtt                                           <  2:350297/143‑1 (MQ=255)
                                                                                                 cACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGACCAAAACAATTCCa                                        >  2:903173/1‑143 (MQ=255)
                                                                                                    gggggCGTGAACGGTGAGACTAAACCGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTc                                     <  1:154932/143‑1 (MQ=255)
                                                                                                    gggggCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTc                                     >  1:404198/1‑143 (MQ=255)
                                                                                                     ggggCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTcc                                    >  2:152981/1‑143 (MQ=255)
                                                                                                           tGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCACTCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAgg                              >  2:186863/1‑143 (MQ=255)
                                                                                                             aaCGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGAc                            >  1:397752/1‑143 (MQ=255)
                                                                                                               cGGTGAGACTAAACGGGGTGTCGTTCAATTTCTGCACTGTAGTTGCTTTGCCTGTTGCCCAATCAGCCATGTTTTTCTCATGTTTCGATTGACTTGCCTTAGCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTg                          <  2:494365/143‑1 (MQ=255)
                                                                                                                ggTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTgg                         >  1:597020/1‑143 (MQ=255)
                                                                                                                 gTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGa                        <  1:553523/143‑1 (MQ=255)
                                                                                                                   gagaCTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAg                      <  1:567518/143‑1 (MQ=255)
                                                                                                                          accAGGGCGTCGGGCCAAGGCTGCACTTTAGTGACGGTGCCTGTTACCCCATCAGCCATGTTATACGCCCGATTTGATTGTCCTGCCTTATGTTCGAAAAAAAAAAAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAAt               <  2:22354/141‑1 (MQ=255)
                                                                                                                              gggCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGat           <  2:419650/143‑1 (MQ=255)
                                                                                                                              gggCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGat           <  2:397752/143‑1 (MQ=255)
                                                                                                                              gggCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGGTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGat           <  1:675561/143‑1 (MQ=255)
                                                                                                                                  gtccgtccAATTCTGCACTGTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGatcaaa       <  2:818548/143‑1 (MQ=255)
                                                                                                                                  gTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGatcgaa       >  2:629566/1‑143 (MQ=255)
                                                                                                                                     ggTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCATTCCCGAAGGACTGGACGGCTCAATCGctcaactca    >  1:713950/1‑143 (MQ=255)
                                                                                                                                      gTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGatcaaatcaa   <  1:113650/143‑1 (MQ=255)
                                                                                                                                       tCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGACTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGATCAaatcaat  >  2:668109/1‑143 (MQ=255)
                                                                                                                                           |                                                                                                                                          
GATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAGTTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGATCAAATCAAT  >  NC_000913/4114292‑4114569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A