Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A19 F91 I0 R1
|
49 |
33.8 |
1296440 |
89.8% |
1164203 |
142.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,114,431 |
G→A |
100% |
N14N (AAC→AAT) |
fpr ← |
flavodoxin/ferredoxin‑NADP(+) reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,114,431 | 0 | G | A | 100.0%
| 87.5
/ NA
| 28 | N14N (AAC→AAT) | fpr | flavodoxin/ferredoxin‑NADP(+) reductase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (14/14); total (14/14) |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAGTTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGATCAAATCAAT > NC_000913/4114306‑4114569
|
tttACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAGACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGGGTCGGTCCAATTCTGCACTTGAGTGAc > 1:12162/1‑143 (MQ=255)
aTAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGc > 2:246142/1‑143 (MQ=255)
tAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCCAGGCCAAGCTTGGTAAATTGCCCGGCGGTCAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGcc < 1:450847/143‑1 (MQ=255)
gTAGGCGGGCTGGGCGCGTTCGCCGTCGAGTGCAAGGCCAAGCGTGGTAAAGTGCCCGGCGGTAAGCGGAAGCACGTGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTa < 2:595874/143‑1 (MQ=255)
gTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTa < 1:246142/143‑1 (MQ=255)
cgcTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCaaac > 1:14951/1‑141 (MQ=255)
tGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGCAAATTGTCCTGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGCGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGc < 1:327396/143‑1 (MQ=255)
tGGACGCGCTCGCTGTCGTTTTCAAGGCCAAGCTTCGTATATTGCCCGGCGGTAAACGGACGCACGGGGGCGTCACCGGTTAGACTAAACAGGGCGTCGGTCCAATACTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGc < 2:528127/143‑1 (MQ=255)
aCGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACTGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCAt < 1:51175/143‑1 (MQ=255)
cgTTCGCGGTCGATTTCAAGGCCAAGCTTGGTAAATGGCCGGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGtt < 2:446845/143‑1 (MQ=255)
ttCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGtttt > 1:260640/1‑143 (MQ=255)
aTTTCAAGGCCAAGCTTGGCAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACCGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGttt < 1:157976/143‑1 (MQ=255)
gCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGAc < 1:428434/143‑1 (MQ=255)
ttGGTAAACTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACTGGGCGGCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAAGCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCtt < 2:404957/143‑1 (MQ=255)
tGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTa > 1:245202/1‑143 (MQ=255)
tGCCCGGCGGTAAACGGAAGCACGGGGGCGTCAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGtt < 1:82583/143‑1 (MQ=255)
cccGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCCCCTGTTTTGATTAACTTGCCTTATCTTctctct > 2:417312/1‑138 (MQ=255)
cggcggTAACCGGAAGCACGGGGGCGCGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTcc < 1:448452/143‑1 (MQ=255)
cGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACaaaaaa > 1:528914/1‑143 (MQ=255)
cGTGAACGGTGAGACTAAACAGGGCGGCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGaa < 2:238270/143‑1 (MQ=255)
gTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGCACAAAAAACATATAGCCCCGAAg > 2:416520/1‑143 (MQ=255)
gTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAACAATTACAGTCCCGAAg > 2:373684/1‑143 (MQ=255)
gagaCTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAg > 1:361155/1‑143 (MQ=255)
tAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCGCa > 1:423098/1‑143 (MQ=255)
aaaCAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCaa < 1:80122/143‑1 (MQ=255)
ggTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGaacaaatca > 2:56363/1‑143 (MQ=255)
tCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCTAGTCCCGAAGGACTGGAAGGCTCAATCGATCAaatcaat > 2:89332/1‑143 (MQ=255)
tCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTCCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGCCCCGAACGACTGGAAGCCTCAATCGatcaaaccaac > 2:77767/1‑142 (MQ=255)
|
TTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAGTTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGATCAAATCAAT > NC_000913/4114306‑4114569
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
