Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F91 I1 R1 26 61.7 2321240 90.8% 2107685 142.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,114,431 G→A N14N (AAC→AAT)  fpr ← flavodoxin/ferredoxin‑NADP(+) reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,114,4310GA96.9% 190.5 / NA 64N14N (AAC→AAT) fprflavodoxin/ferredoxin‑NADP(+) reductase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base A (33/29);  minor base C (1/1);  total (34/30)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAGTTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGATCAAATCAAT  >  NC_000913/4114291‑4114569
                                                                                                                                            |                                                                                                                                          
tgatgatCGGGCGAGTTTACATCGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAAtt                                                                                                                                          <  2:1052134/142‑1 (MQ=255)
ggATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAAtt                                                                                                                                          >  1:343196/1‑143 (MQ=255)
         ggCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGTACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACttt                                                                                                                                 >  2:935920/1‑143 (MQ=255)
         ggCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGGGAGACTACACAGGGCGTCGGTCCAATTCTGCACttt                                                                                                                                 >  1:211806/1‑143 (MQ=255)
          gCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTa                                                                                                                                <  2:792431/143‑1 (MQ=255)
               tttACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGAGCGCGAACGGTGAGACTAAACAGGGAGCCGGCCCACTTCGGCAACTTAGTGAc                                                                                                                           >  2:497685/1‑143 (MQ=255)
                 tACATAGGCGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACtt                                                                                                                         <  2:987573/143‑1 (MQ=255)
                      cggAGTAGGCGCGCTGGACGCGTGCGCCGGCGAGTTCAACGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCt                                                                                                                    <  2:897479/142‑1 (MQ=255)
                            aGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTAcc                                                                                                              >  1:137964/1‑143 (MQ=255)
                              gcgcgcTTGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCa                                                                                                            <  2:213038/143‑1 (MQ=255)
                                  gcTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTGGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCa                                                                                                        <  1:243098/143‑1 (MQ=255)
                                   cTGGACCCGGTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCCGTAAACGGAAGCACGGGGGCGTGAACCGTGTGACTAATCAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAg                                                                                                       <  1:1033935/143‑1 (MQ=255)
                                      gACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCa                                                                                                    >  1:672025/1‑143 (MQ=255)
                                           gTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTTCCCATGCAGCCAGGttt                                                                                               >  1:45100/1‑143 (MQ=255)
                                             tCGCCGTCGAGTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAACCAGGGCGTCGGTCCAATTCTGCGCTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGttttt                                                                                             <  2:433591/143‑1 (MQ=255)
                                              cGCCGTCGATTTCATGGCCATGGTGGGTAATTTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTtc                                                                                            <  2:910014/143‑1 (MQ=255)
                                                ccGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTtctc                                                                                          <  1:496886/143‑1 (MQ=255)
                                                  gttgATTTCGAGGCCAGGCTTGATAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCt                                                                                        <  1:851299/140‑1 (MQ=255)
                                                  gTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACTCAATCAGCCGTGTATGTCTCCt                                                                                        >  1:1025135/1‑143 (MQ=255)
                                                      aTTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGttt                                                                                    <  2:637833/143‑1 (MQ=255)
                                                       tttCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGtttt                                                                                   >  1:1111966/1‑143 (MQ=255)
                                                       tttCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGtttt                                                                                   >  1:954067/1‑143 (MQ=255)
                                                          cAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTTCAATTCTGAAATTTAGTGACTTTGCATGTTAACAAATAAGCCAAGTTTATCTCATGTTttgat                                                                                >  1:884960/1‑143 (MQ=255)
                                                           aaGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTttgatt                                                                               <  2:343196/143‑1 (MQ=255)
                                                           aaGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAAGTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCACCCCTGTTTTGCCCCTCTCttgatt                                                                               >  2:603382/1‑143 (MQ=255)
                                                              gCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGAc                                                                            >  1:977699/1‑143 (MQ=255)
                                                                    cTTGGCAAAGTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCt                                                                      <  1:1023486/143‑1 (MQ=255)
                                                                                cccGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTtct                                                          >  1:131683/1‑143 (MQ=255)
                                                                                 ccGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTACACAGGGCGTCGGTGCAAACCTGCACTTTCGTGACTTTGCCCGTTACCCAATCAGCCATGTCTTCCTCCTGTCTTGATTCACGTGCCTGACCTGCGCtctc                                                         >  2:380340/1‑143 (MQ=255)
                                                                                 ccGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCACTCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTtctc                                                         >  1:931909/1‑143 (MQ=255)
                                                                                 ccGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTtctc                                                         <  2:1044280/143‑1 (MQ=255)
                                                                                 ccGGCGGCAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTGTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGCCTTGCCTTATCTTCGTtctc                                                         <  2:617953/143‑1 (MQ=255)
                                                                                  cggcggTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCACTCAGCCCTGTTTTTCTCCTGTTTTGATTGACTCGCCTTATCTTCGTTCTcc                                                        >  1:1048927/1‑143 (MQ=255)
                                                                                    gcggTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGa                                                      <  2:199126/143‑1 (MQ=255)
                                                                                     cggTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGaa                                                     <  2:672025/143‑1 (MQ=255)
                                                                                       gTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACa                                                   >  1:770288/1‑143 (MQ=255)
                                                                                       gTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCATGTCTTGCTGGACTGGCCTTATCTTCGTTCTCTGAACa                                                   >  1:481363/1‑143 (MQ=255)
                                                                                          aaCGGAAGGACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATGCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACaaaa                                                <  1:315631/143‑1 (MQ=255)
                                                                                          aaCGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCTTGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACaaaa                                                >  2:848536/1‑143 (MQ=255)
                                                                                             ggAAGCACGGGGGCGTTAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACaaaaaaa                                             <  1:1027243/143‑1 (MQ=255)
                                                                                               aaGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGACCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTAGTTCTCCGAACACAAAACtt                                           >  2:995276/1‑143 (MQ=255)
                                                                                                aGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTc                                          <  1:856324/143‑1 (MQ=255)
                                                                                                   aCGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAg                                       >  1:446126/1‑143 (MQ=255)
                                                                                                    cGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGt                                      >  1:239577/1‑143 (MQ=255)
                                                                                                       gggCGTGAACGGTGAGACTAAACAGTGCGTCGGTCGAATTCTGCACTTGAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGAATTGACTTATCTTCGTTCTCCGAACAAAAAAATTCTAGTccc                                   >  2:579658/1‑143 (MQ=255)
                                                                                                        ggCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCAGAACAAAAAAATTCCAGTCCCg                                  <  2:777933/143‑1 (MQ=255)
                                                                                                          cGTGAACGGTGAGACTACACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGaa                                <  1:231322/143‑1 (MQ=255)
                                                                                                           gTGAACGGTGAGACTAGACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAg                               >  1:604943/1‑143 (MQ=255)
                                                                                                                cGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTg                          >  2:49696/1‑143 (MQ=255)
                                                                                                                 ggTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTgg                         >  2:674598/1‑143 (MQ=255)
                                                                                                                 ggTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTgg                         <  2:547175/143‑1 (MQ=255)
                                                                                                                    gagaCTAAACAGGGCCTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCGCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAg                      <  1:459405/143‑1 (MQ=255)
                                                                                                                     agaCTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTCCCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAgg                     >  2:907270/1‑143 (MQ=255)
                                                                                                                     agaCTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGCCTGGAggg                     >  1:509776/1‑143 (MQ=255)
                                                                                                                     agaCTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAgg                     <  1:935920/143‑1 (MQ=255)
                                                                                                                      gaCTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGc                    >  2:306931/1‑143 (MQ=255)
                                                                                                                         tAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTTTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAACAAAATTCCAGTCCCGAAGGACTGGAAGGCTCa                 >  2:580546/1‑143 (MQ=255)
                                                                                                                              aGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGa            <  1:306931/143‑1 (MQ=255)
                                                                                                                               gggCGGCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGat           <  1:77722/143‑1 (MQ=255)
                                                                                                                                ggCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGatc          >  1:1094102/1‑143 (MQ=255)
                                                                                                                                 gCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGatca         >  1:871063/1‑143 (MQ=255)
                                                                                                                                   gTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGatcaaa       <  1:277370/143‑1 (MQ=255)
                                                                                                                                      ggTCCACTTCTGCACCTTAGTGACTTTGCCGGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCCTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCCAAGGACTGGAAGGCTCAATCGatcaaatca    <  2:947677/143‑1 (MQ=255)
                                                                                                                                        tCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGTACTAAAAAATTCCCTTCCCGAAGGACTGGAAGGCCTCATCGATCAaatcaat  >  1:574641/1‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                          
GGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAGTTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGATCAAATCAAT  >  NC_000913/4114291‑4114569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A