Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F21 I0 R1 50 53.6 2034412 90.9% 1849280 142.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,123,110 G→A 100% P77L (CCA→CTA)  ftsN ← cell division protein FtsN

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,123,1100GA100.0% 149.5 / ‑6.7 56P77L (CCA→CTA) ftsNcell division protein FtsN
Reads supporting (aligned to +/- strand):  ref base G (0/2);  major base A (26/26);  minor base C (0/2);  total (26/30)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TTCAAGAAGCTGACGTTGTTCTGGTGTCAGTTGCTCCGGCGTTTTCACTTCACCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTGGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTAATGAAGTACAGACCACCGATAAAGGTCACAAGAACGGCGGCAGCAATAGCGACCATAGCGGGAGAAACCG  >  NC_000913/4122971‑4123248
                                                                                                                                           |                                                                                                                                          
ttCAAGAAGCTGACGTTGTTCTGGTGTCAGTTGCTCCGGCGTTTTCACTTCACCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGCAGCGCCAGCGTTCTTCTGGTTTtagtg                                                                                                                                         >  1:455140/1‑143 (MQ=255)
ttCAAGAAGCTGACGTTGTTCTGGTGTCAGTTGCTCCGGCGTTTTCACTTCACCACCGGCAGAAGATTCTGAGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTtagtg                                                                                                                                         >  1:726557/1‑143 (MQ=255)
ttCAAGAAGCTGACGTTGTTCTGGTGTCAGTTGCTCCGGCGTGTTCACTTCACCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTtagtg                                                                                                                                         <  1:703273/143‑1 (MQ=255)
ttCAAGAAGCTGACGTTGTTCTGGTGTCAGTTGCTCAGGCGTTTTCACTTCACCACCGGCAGAGGGGTCTGTGGGCGCACGCCCTCCCGGCGGGCGACTTTCCAGCTCGTTAATGTAGCGCCAGCGCTCCTCTGGTTGtagtg                                                                                                                                         >  2:469349/1‑143 (MQ=255)
      aagCTGACGTTGTTCTGGTGTCAGTTGCTCCGGCGTTTTCACTTCACCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTc                                                                                                                                   <  1:502901/143‑1 (MQ=255)
         cTGACGTTGTTCTGGTGTCAGTCGCTCCGGCGTTTTCACTTCACCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGt                                                                                                                                <  1:752490/143‑1 (MQ=255)
              gttgttCGGGTGTCAGTTGCTCCGGCGCTTTCACTGCACCGCCGGCAGAGGGTTCTGTGGGCGCGCGCACTCCCGGCTGGTGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCg                                                                                                                           <  2:231104/143‑1 (MQ=255)
              ggtgttCTGGTGTCAGTTGCTCCGGCGTTTTCACTTCACCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTGGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCg                                                                                                                           <  2:135897/141‑1 (MQ=255)
              ggtgttCTGGTGTCAGTTGCGCCGGCGTTTTCGCTTCACCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCg                                                                                                                           <  2:924244/141‑1 (MQ=255)
              gctgttCTTGTGTCTGTTGCTCCGGCGTTTTCACTTCACCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCg                                                                                                                           <  1:419411/141‑1 (MQ=255)
                 gttCTGGTGTCAGTTGCTCCGGCGTTTTCACTTCACCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTACTGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTCGTCCGTTTCCGGTc                                                                                                                        >  2:467947/1‑143 (MQ=255)
                  ttCTGGTGTCAGTTGCTCCGGCGTTTTCACTTCACCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCa                                                                                                                       <  1:297223/143‑1 (MQ=255)
                             gTTGCTCCGGCGTTTTCACTTCACCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGCTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCtt                                                                                                            >  1:389722/1‑143 (MQ=255)
                                 cTCCGGCGTTTTCACTTCACCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCa                                                                                                        <  1:967693/143‑1 (MQ=255)
                                   ccGGCGTTTTCACTTCACCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGc                                                                                                      <  1:461121/143‑1 (MQ=255)
                                     ggCGTTTTCACTTCACCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGCCGGCCGGCTCCTGTCACTTTCTGGCTTTGCAGCGt                                                                                                    >  1:686431/1‑143 (MQ=255)
                                        gTTTTCACTTCACCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTCATGTAGCGCCGGCGTTCTTCTGGTTTTAGTGGTATTCAGTTTACGGTCACTTTCTGGCTTTGCAGCGtctc                                                                                                 >  1:361728/1‑143 (MQ=255)
                                        gTTTTCACTTCACCACCGGCAGAAGGTTCTGTAGGCGCACGCACTCCCGGCTGACGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTGCTGGTTTTAGTGGTAGTCCGGTTCCGGTCACTTTCTGGCTTTGCAGCGtctc                                                                                                 >  1:698316/1‑143 (MQ=255)
                                           ttcacttcacCACCGTCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGa                                                                                              <  1:378204/143‑1 (MQ=255)
                                           ttcacttcacCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACGCACTGGCAATAGAGCGTGTCGGa                                                                                              >  1:372794/1‑143 (MQ=255)
                                                ttcacCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACtctt                                                                                         <  1:713597/143‑1 (MQ=255)
                                                 gcgccgccGGCAGGTGGTCCGGTGGGCGCACGCACTCCCGGCTGGCGACTGTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACtcttc                                                                                        <  2:272650/137‑1 (MQ=255)
                                                     caccGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCttctttc                                                                                    <  1:549598/143‑1 (MQ=255)
                                                          gCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCTTCTCGTACTCTTCTTTCTtgtg                                                                               <  1:384901/143‑1 (MQ=255)
                                                           cagcagGTTCTGTGGGCGCACGCACCCCCGCACGGCAGGTTGCCTTCTCTTTTATGTAGCGCCAGCGTTCTTCTGGTTTTCGTGGTCGTCCGTTTCCTGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGa                                                                              <  2:715151/143‑1 (MQ=255)
                                                                  ttCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTaa                                                                       <  2:826055/143‑1 (MQ=255)
                                                                   tCTGTGGGCGCACGCACTCCCGGCTGGCGAGTATCCAGCTCTTTCAGGTAGCGCCACCGTTCTCCTGGTTTGAGTGGTAGTCCGCTTCCGGTCGCTGGATGGCTTTGGAGCGACACGGACCCTTCTGTCCCGTGATGTGTAAt                                                                      >  2:288037/1‑143 (MQ=255)
                                                                    cggtgCGCGCACGCACTCCCGCCTGGCGACTTTCCAGCTCTTTGATGTCGCGCCGGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTAATg                                                                     <  2:691938/141‑1 (MQ=255)
                                                                    cTGTCGGCGCACTCACTCCCGGCTGGCGACTTTCCAGCTCCTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCATCGTCTCGGCCTCTTCTTTCTTGTGATGCGTAATg                                                                     <  1:194890/143‑1 (MQ=255)
                                                                     tgtgGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTAATGa                                                                    >  1:292671/1‑143 (MQ=255)
                                                                     tgtgGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGAGGCGTAATGa                                                                    >  2:337835/1‑143 (MQ=255)
                                                                      gtgtGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTACTGTAGCGCCAGCTTTCCTCTAGTTGAGGCGCAAATTAGTATTTGTATACTTTCGGGCTTTGCAGCGACTCGGTCTTTTCTTTCTTGTGATGCGTAATGaa                                                                   <  2:720317/143‑1 (MQ=255)
                                                                       tgGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTAATGAAg                                                                  >  1:714450/1‑143 (MQ=255)
                                                                       tgGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTAATGAAg                                                                  <  1:1014627/143‑1 (MQ=255)
                                                                          gcgcACGCACTCCCGGCTGGCGACTTTCCAGCTCTATAATGTAGCGCCAGCGTTCTCCTGTTTTTAGTGGTAGTCCGTTTCCGGCCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGCTGCGTAATGCAGtcc                                                               >  2:261394/1‑141 (MQ=255)
                                                                             cacgcacTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTAATGAAGTACAGa                                                            <  1:479824/143‑1 (MQ=255)
                                                                                    tCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTcc                                                                                                                                  <  2:760957/66‑1 (MQ=255)
                                                                                    tCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTcc                                                                                                                                  >  1:760957/1‑66 (MQ=255)
                                                                                      ctggCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCGTCGGGTTTTAGTGTTATTCCGTTTCCGGTCCCTTTCTGGCTTTGCAGGGTCTCGGACTCTTCTTTCTTGTGATGCGTAATGAGGTACAGACGACCGATa                                                   >  2:439225/3‑143 (MQ=255)
                                                                                      ccGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTAATGAAGTACAGACCCCCGaca                                                   >  2:534245/1‑141 (MQ=255)
                                                                                           tGGTGATTTTTCAGTTTTTTAATGTAGCGCCAGGGGTCGACGGGCGAGAGTGGTAGTCCGTGTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTAATGAAGTACAGACCACCGATAAAGGt                                              <  1:25940/143‑1 (MQ=255)
                                                                                           tGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGCGATGCGTAATGCCGTACAGACCCCCGATAACggc                                              >  2:971227/1‑142 (MQ=255)
                                                                                                aCTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTGTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTAATGAAGTACAGACCACCGATAAAGGTCACaa                                         <  1:424136/143‑1 (MQ=255)
                                                                                                aCTTTCCAGCGCTTTTATGTAGCGCCAGCGTTCTTCTGGTGTTGGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTAATGAAGTACAGACCACCGATAAAGGTCACaa                                         <  2:639935/143‑1 (MQ=255)
                                                                                                       aGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTAGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTAGTGAAGCGTAATGAAGTACAGACCACCGATAAAGGTCACAAGAAcggc                                  >  1:690064/1‑143 (MQ=255)
                                                                                                          tctTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTAATGAAGTACAGACCACCGATAAAGGTCACAAGAACggcggc                               >  1:675900/1‑143 (MQ=255)
                                                                                                          tctTTAATGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACGTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGAGTAGTGAAGTACAGACCACCGATAAAGGTCACAAGAACggcggc                               >  1:346631/1‑143 (MQ=255)
                                                                                                            tttACTGTAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTAATGAAGTACAGACCACCGATAAAGGTCACAAGAACGGCGgcag                             <  1:197743/143‑1 (MQ=255)
                                                                                                                   tAGCGCCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGCTGCGTAATGCAGTACAGACCACCGATAAAGGTCACAAGAACGGCGGCAGCAATAGc                      >  2:253110/1‑143 (MQ=255)
                                                                                                                     ggtccAGTGTTTTTCTGGTTTGCGTGGTAGTCCGTTTCCGGCCACTTTCTGGCTTTGCAGCGGCCCGGACTCTTCTTGCTTGTGATGCGTAATGAAGTACAGACCACCGATAAAGGTCACAAGAACGGCGGCAGCAATAGCGa                    <  2:352391/140‑1 (MQ=255)
                                                                                                                     gcgcCAGCGGTCGTCTGGTTTTAGTGGTAGTCCGTTACCGGGCACATTCTGGCTTTGCAGCGTCGCGGACTCTTCTTTCTTGTGATGCGTAATGACGTAGGGACCACCGATAAAGGACCCCAGTGCGGCGGCAGCAATTGCgg                    >  2:634371/1‑142 (MQ=255)
                                                                                                                      cgcCTGCGTTCTTCTGGTTGCAGTTGCAGTCCGGTTCCTGTCGCTTTCTGGCTTTGCAGCGTCTCGGTCTCTTCTTTCTTGTGATGCGTAGTGAAGTACAGACCACCGATAAAGGTCACAAGAACGGCGGCAGCAATAGCGAc                   <  2:235363/143‑1 (MQ=255)
                                                                                                                      cgcCAGCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTCCTTTCTTGTGATGCGTAATGAAGGACAGACCACCGATAAAGGTAACAGGAACAGCGGCAGCAATACCGAc                   >  2:880745/1‑143 (MQ=255)
                                                                                                                          tgctttcatcTCGTTTTATTTGTAGTCCGTTTTCGGTCACTTTCTGGCTTTGCAGCGGCTCGGTCTCTTCTTTCTTTTGATGCGTGATGAAGTACAGACCATCGATTAAGGTCACAAGTACGGCGGCAGCAATAGCGACCATa               <  2:977777/139‑1 (MQ=255)
                                                                                                                           gCGTTCTTCTGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTAATGAAGTACAGACCACCGATAAAGGTCACAAGAACGGCGGCAGCAATAGCGACCATAg              >  1:877048/1‑143 (MQ=255)
                                                                                                                               tcttctGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTAATGAAGTACAGACCACCGATAAAGGTCACAAGAACGGCGGCAGCAATAGCGACCATAGCggg          <  1:394006/143‑1 (MQ=255)
                                                                                                                                 ttctGGTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCGCGGACTCTTCTTTCTTGTGATGCGTAATGAAGTACAGACCACCGATAAAGGTCACAAGAACGGCGGCAGCAATAGCGACCATAGCGGgag        >  2:247299/1‑143 (MQ=255)
                                                                                                                                  tctGGTTTTAGTGGTAGTCCGTTTCCGGTCGCTTTCTGGCTTTGCAGCGTCTCGGGCTCTTCTTTCTTGTGATGCGTTATGACGTACAGACCACCGATAAGGGTCACACGAACGGCGGCAGCGAGAGCGACCATGGCGGgcga       >  2:973244/1‑143 (MQ=255)
                                                                                                                                     ggTTTTAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTAATGAAGTACAGACCACCGATAAAGGTCACAAGAACGGCGGCAGCAATAGCGACCATAGCGGGAGAAAc    >  1:354482/1‑143 (MQ=255)
                                                                                                                                       ttttAGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTAATGAAGTACAGACCACAGATAAAGGTCACAAGAACGGCGGCAGCAATAGCGACCATAGCGGGAGAAACCg  >  1:815652/1‑143 (MQ=255)
                                                                                                                                           |                                                                                                                                          
TTCAAGAAGCTGACGTTGTTCTGGTGTCAGTTGCTCCGGCGTTTTCACTTCACCACCGGCAGAAGGTTCTGTGGGCGCACGCACTCCCGGCTGGCGACTTTCCAGCTCTTTAATGTAGCGCCAGCGTTCTTCTGGTTTTGGTGGTAGTCCGTTTCCGGTCACTTTCTGGCTTTGCAGCGTCTCGGACTCTTCTTTCTTGTGATGCGTAATGAAGTACAGACCACCGATAAAGGTCACAAGAACGGCGGCAGCAATAGCGACCATAGCGGGAGAAACCG  >  NC_000913/4122971‑4123248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A