Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A23 F79 I1 R1
|
20 |
28.5 |
998386 |
94.1% |
939481 |
141.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913_3_pae_tpiA |
4,110,747 |
G→T |
intergenic (+62/+784) |
cdh → / ← yiiQ |
CDP‑diacylglycerol phosphotidylhydrolase/DUF1454 family putative periplasmic protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913_3_pae_tpiA | 4,110,747 | 0 | G | T | 100.0%
| 67.8
/ NA
| 22 | intergenic (+62/+784) | cdh/yiiQ | CDP‑diacylglycerol phosphotidylhydrolase/DUF1454 family putative periplasmic protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (13/9); total (13/9) |
TTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCTTCAGCCGAGGAAATTCAGGATCATCAGTGTGAGATTTTGCGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGA‑AATCCGGCACCTGTCAGACTTAAGGCGGCCCCGCCGCGAGCGGTTTCGCCAATTCTAAGATCTTAAGATATGGGTCTTTTGCCTTCACGGCTGCGCTTGCCAGCAACACTCCCCTCGTGCCGAGTTTAAGCGCGGCTTCAACGTCCTCTCCGCTCTCAATACCCGCCCCAGT > NC_000913_3_pae_tpiA/4110599‑4110892
|
ttGCTGGCGACACAACGAAATCTACTGACACTTAACCGTGCTTCAGCCGAGGAAATTCAGGATCATCAGTGTGAGATTTTGCGCTAAGGCGAGGAGTTGAGGAAAGTAAGTGCCGGATATGA‑AACCCGGCACCTGTCAGACTTCGggcg > 2:297146/1‑149 (MQ=255)
ccatgAAATCTTCTGACGCTTAACCGTGCTTCAGCCGAGGAAATTCAGGATCATCCGTGTGAGATTTTGCGTTAAGGCGAAGAGCCAAGGCAAGTAAGTGCCGGATATCA‑AATCCGGCTTCTGTCAGACTTAAGGCTGCCCCGCCGCGa < 2:420238/145‑1 (MQ=255)
aaCGAAATCTACTGACGCTTAACCGTGCTTCAGCCGAGGAAATTCAGGATCATCAGTGTGAGATTTTGCGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGA‑AATCCGGCACCTGTCAGACTTAAGGCTGCCCCGCCGCGAg > 2:255993/1‑149 (MQ=255)
aaCGAAATCTACGGACGGTTAACCGTGCTTCAGCCGAGGAAATTCAGGATCATCAGTGTGAGATTTTGCGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGA‑AATCCGGCACCTGTCAGACTTAAGGCTGCCCCGCCGCGAg < 2:158542/149‑1 (MQ=255)
aCGAAATCTACTGACGCTTAACCGTGCTTCAGCCGAGGAAATTCAGGATCATCAGTGTGAGATTTTGCGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGA‑AATCCGGCACCTGTCAGACTTAAGGCTGCCCCGCCGCGAGc > 1:375218/1‑149 (MQ=255)
cGAAATCTACTGACGCTTAACCGTGCTTCAGCCGAGGAAATTCAGGATCATCAGGGTGAGATTTTGCGTTAAGGCGAAGAGAAACGCGAAGGAAG‑ACTGCATAAGAGATTCCGGCACCTGTCAGACTTAAGGCTGCCCCGCCGCGAGCg < 1:246550/149‑1 (MQ=255)
aaTCTACTGACGCTTAACCGTGCTTCAGCCGAGGAAATTCAGGATCATCAGTGTGAGATTTTGCGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGA‑AATCCGGCACCTGTCAGACTTAAGGCTGCCCCGCCGCGAGCGGtt > 1:498975/1‑149 (MQ=255)
cTGACGCTTAACCGTGCTTCAGCCGAGGAAATTCAGGATCATCAGTGTGAGATTTTGCGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGA‑AATCCGGCACCTGTCAGACTTAAGGCTGCCCCGCCGCGAGCGGTTTCGCCa > 2:35847/1‑149 (MQ=255)
aCGCTTAACCGTGCTTCAGCCGAGGAAATTCAGGAGCATCAGTGTGAGATTTTGCGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATCTGA‑AATCCGGCACCTGTCAGACTTAAGGCTGCCCCGCCGCAAGCGGTGTAGCCCAtt > 2:310899/1‑149 (MQ=255)
ttAACCGTGCTTCAGCCGAGGAAATTCAGGATCATAAGTGTGAGATTTTGCGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGA‑AATCCGGCACCTGTCAGACTTAAGGCTGCCCCGCCGCGAGCGGTTTCGCCAATTCTaa < 1:223986/149‑1 (MQ=255)
gATCATCAGTGTGAGATTTTGCGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGA‑AATCCGGCCCCTGTCAGACTTAAGGCTGCCCCGCCGCGAGCGGTTTCGCCAAGTCTAAGATCTTAAGATATGGGTCTTTTGCCTTCa > 1:299650/1‑149 (MQ=255)
tcatcaGTGTGAGATTTTGCGTTAAGGCGACGAGTTAAGGAAAGTAAGTGCCGGATATGA‑AATCCGGACCCTGTCAGACTTAAGGCTGCCCCGCCGCGAGCGGTTTCGCCAAATCTAAGATCTTAAGATATGGGTCTTTTGCCTTCACg > 1:423803/1‑149 (MQ=255)
tgAGATTTTGCGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGA‑AATCCGGCACCTGTCAGACTTAAGGCTGCCCCGCCGCGAGCGGTTTCGCCAATTCTAAGATCTTAAGATATGGGTCTTTTGc < 1:322164/133‑1 (MQ=255)
tgAGATTTTGCGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGA‑AATCCGGCACCTGTCAGACTTAAGGCTGCCCCGCCGCGAGCGGTTTCGCCAATTCTAAGATCTTAAGATATGGGTCTTTTGc > 2:322164/1‑133 (MQ=255)
cGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGA‑AATCCGGCACCTGTCAGACTTAAGGCTGCCCCGCCGCGAGCGGTTTCGCCAATTCTAAGATCTTAAGATATGGGTCTTTTGCCTTCACGGCTGCGCTTGCCAGCAaca < 1:255993/149‑1 (MQ=255)
aaGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGA‑AATCCGGCACCTGTCAGACTTAAGGCTGCCCCGCCGCGAGCGGTTTCGCCAATTCTAAGATCTTAAGATATGGGTCTTTTGCCTTCACGGCTGCGCTTGCCAGCAACACTcc > 1:88799/1‑149 (MQ=255)
aaGGAAAGTAAGTGCCGGATATGA‑AATCCGGCACCTGTCAGACTTAAGGCTGCCCCGCCGCGAGCGGTTTCGCCAATTCTAAGATCTTAAGATATGGGTCTTTTGCCTTCACGGCTGCGCTTGCCAGCAACACTCCCCTCGTGCCGAGt < 1:198711/149‑1 (MQ=255)
gAAAGTAAGTGCCGGATATGA‑AATCCGGCACCTGTCAGACTTAAGGCTGCCCCGCCGCGAGCGGTTTCGCCAATTCTAAGATCTTAAGATATGGGTCTTTTGCCTTCACGGCTGCGCTTGCCAGCAACACTCCCCTCGTGCCGGCTTTa > 2:460606/1‑149 (MQ=255)
gATATGA‑AATCCGGAACCTGTCAGACTTAAGGCTGCCCCGCCGCTAGCGGTTTCGCAAATTCTAAGATCTTAAGATATGGGTCTTTTGCCTTCACGGCTGCGCTTGCCAGCAACACTCCCCTTGTGCCGAGTTTAAGCGCGGCTTCAAc < 2:370611/149‑1 (MQ=255)
atatGA‑AATCCGGCACCTGTCAGACTTAAGGCTGCCCCGCCGCGAGCGGTTTCGCCAATTCTAAGATCTTAAGATATGGGTCTTTTGCCTTCACGGCTGCGCTTGCCAGCAACACTCCCCTCGTGCCGAGTTTAAGCGCGGCTTCAACg < 1:35847/149‑1 (MQ=255)
aGACTTAAGGCTGCCCCGCCGCGAGCGGTTTCGCCAATTCTAAGATCTTAAGATATGGGTCTTTTGCCTTCACGGCTGCGCTTGCCAGCAACACTCCCCTCGTGCCGAGTTTAAGCGCGCCTTCTACGTCCTCTCCGCTCCCACTAccc > 2:87975/1‑149 (MQ=255)
aCTTAAGGCTGCCCCGCCGCGAGCGGTTTCGCCAATTCTAAGATCTTAAGATATGGGTCTTTTGCCTTCACGGCTGCGCTTGCCAGCAACACTCCCCTCGTGCCGAGTTTAAGCGCGGCTTCAACGTCCTCTCCGCTCTCAATACCCGc > 2:325397/1‑149 (MQ=255)
ttAAGGCTGCCCCGCCGCGAGCGGTTTCGCCAATTCTAAGATCTTAAGATATGGGTCTTTTGCCTTCACGGCTGCGCTTGCCAGCAACACTCCCCTCGTGCCGAGTTTAAGCGCGGCTTCAACGTCCTCTCCGCTCCCACTACCCGccc > 2:20216/1‑149 (MQ=255)
ggctgcCCCGCCGCGGGCGGTTGCGCAAATTCTAAGCTCTTAAGATATGGGTCTTTTGCCTTCACGGCTGCGCTTGCCAGCAACACTCCCCGCGTGCCGAGTTTAAGCGCGGCTTCAACGTCCTCTCCGCTCTCAATCCCCGCCCCAGt < 2:79539/149‑1 (MQ=255)
|
TTGCTGGCGACACAACGAAATCTACTGACGCTTAACCGTGCTTCAGCCGAGGAAATTCAGGATCATCAGTGTGAGATTTTGCGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGA‑AATCCGGCACCTGTCAGACTTAAGGCGGCCCCGCCGCGAGCGGTTTCGCCAATTCTAAGATCTTAAGATATGGGTCTTTTGCCTTCACGGCTGCGCTTGCCAGCAACACTCCCCTCGTGCCGAGTTTAAGCGCGGCTTCAACGTCCTCTCCGCTCTCAATACCCGCCCCAGT > NC_000913_3_pae_tpiA/4110599‑4110892
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
