Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F2 I0 R1
|
166 |
6951.0 |
8192394 |
98.4% |
8061315 |
136.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,925,289 |
A→C |
20.3% |
N156T (AAC→ACC) |
prpC → |
2‑methylcitrate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,925,289 | 0 | A | C | 20.3%
| 213.2
/ 16.3
| 141 | N156T (AAC→ACC) | prpC | 2‑methylcitrate synthase |
| Reads supporting (aligned to +/- strand): ref base A (76/31); new base C (3/29); total (79/62) |
| Fisher's exact test for biased strand distribution p-value = 3.16e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 147 total aligned reads displayed.
CGCACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTT > NZ_CP022686/3925153‑3925428
|
cgcACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTGAGTTCGATTCTTCTCTACTGGGATCACTACAGCCACACCgg > 8:721522/1‑140 (MQ=255)
gcACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCCCACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCCCAACGGc > 7:799627/1‑140 (MQ=255)
cACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCg > 2:339002/1‑140 (MQ=255)
cACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTATGGTGCGCGGGATATTGCCGACAATCTGCTGGCGTCACTTAGTTCGATTGTTCTCTACTGTTATCACTACAGCCACAACGGCg > 6:607248/1‑140 (MQ=255)
aCCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGa > 2:33741/1‑140 (MQ=255)
aCCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGAGATTGCCGACAAACTGCTGGCGTCACTGAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACCACGGCGa > 4:12868/1‑140 (MQ=255)
tttCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATc < 2:2952/140‑1 (MQ=255)
gcgcGGGTGCACGCTGCCATAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCgg < 8:941227/137‑1 (MQ=255)
cTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGa < 3:981455/140‑1 (MQ=255)
cGGCTGCACGCTGCCAGAAAAAGAGGGTCACACCGTTTCTGGTGCGCGGGATATTTCCGACAAACTTGTGGCTTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGaaa < 6:456305/140‑1 (MQ=255)
ggCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCGGGacac > 6:456145/1‑140 (MQ=255)
ggCTGCACGCTGCCAGAAAAAGAGGGGCACACCGGTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCCGCCGGAAAc > 4:330973/1‑140 (MQ=255)
ggCTGCAATAAAATGAGGGGCACACCGTTGTTGGTGCGGGGTATATTGCCGAAAAACTGCGGGGGTCACTTAGTTCGATTATTCTCAACTGGTATCACTACAGCCACACCGGCGAACGCATCCAGCCGGAAACTGATgac < 6:318753/139‑1 (MQ=255)
cGCTGCCAGAAAAAGTGGGGCACACGGTTGCTGGTGCGCGGGATATTGCCGACAAACTGCGGGCGTCACTTTGTTCGATTCTTCTCTACTGGTATCACTACAGCCACACCGGCGAACGCAGCCAGCCGGAAACTGAGgac < 6:745857/140‑1 (MQ=255)
cGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGACACTTAGTTCGTTTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGATTCCAGCCGGAAACTGATgac < 4:749865/140‑1 (MQ=255)
ccAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGActc > 1:1050921/1‑140 (MQ=255)
aacgcgggcCACACCGTTTCTGGGGCGCGGTATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGTTATCACTACACCCACACCGGCGAACCCATCCCCCCGGAAACTGATGACGACTCTATcgg < 5:826583/135‑1 (MQ=255)
agagGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATcggcg > 5:164194/1‑140 (MQ=255)
agagGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCGTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGCCGCCTCTATcggcg > 1:694854/1‑140 (MQ=255)
gggggCACCCCGTTACTGGTGCGGGGGATCTTCCCCCCAAACTGCTGGCGTCCCTTAGTGCGAATCTTCTCAACTGGTCTCACACCAGCCAAACCGGCTAACCCAGCCAGCCGCAAACTGTTGACGACTCTATCGGCGGt < 8:245398/139‑1 (MQ=255)
agGGGCACACGGTTTCTGGTGCGCGGTATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGAATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGt < 4:566384/140‑1 (MQ=255)
agGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGt > 3:847712/1‑140 (MQ=255)
gggCACACAGTTTCTGTTGGGGGGTATATAGCCGAAAAACGGGGGGCGTCACTTAGTTCGATTATTCTCTAGTGGTAGCACTACAGCCACAACGGCTAACTCATCCAGCCGTAAACTTTTGACGACTCTATCGGCGGTCa < 4:148251/140‑1 (MQ=255)
cacCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTcc > 6:120680/1‑140 (MQ=255)
acCGTTTCAGGTGCGCGGGATATTGCCGACAAACTCCTGGCGTCACTTAGATCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCAACCAGCCGGAAACTGATGACGACTCTATCGGCGGACACTTCCt > 4:687251/1‑140 (MQ=255)
gttttGTGGGGCGCGGGATATTGCCGACAAACTGCTGGCGTCAGTATGTTCGATTCTTCTCTAATGTAATCTCTCCAGCAACATCGGGTAATGCAGCCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGc < 6:927878/138‑1 (MQ=255)
gtggtgtggtggGGGGGTTTTTGCGGACAAACGGCTGGGGTCTCTTAGTTGTATTATTCTTTAGTGGTATCACTACCGCCTCAACGGCGAAGGCATCCCGCGGGAACCTGATGACGACTCTATCGGCGGTCACTTCCTGc < 2:513145/134‑1 (MQ=255)
cGTTTCTGGGGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGc < 4:759995/140‑1 (MQ=255)
ttCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTAGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATc > 5:204209/1‑140 (MQ=255)
gcgcGGTATATTCCCGACAAACTGCTGGCGTCACTTAGTGCGATTCTCCTCAACTGGTAGCACTACAGCCCCACCGGCCAACGCACCCCGCCGGAAACTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCa < 3:204418/140‑1 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCAt > 1:795725/1‑86 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCAt < 2:795725/86‑1 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGCCGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCa > 5:253280/1‑140 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCa > 2:261621/1‑140 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCa > 3:102698/1‑140 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACAGGTATCACTACAGCCACACCGGCGAACGCATCCAGCCGGAAACTGATGAAGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCa > 3:495243/1‑140 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTATACTGGTATCACTACAGCCACAACTGAGAACGCATACAGCCGGAAACTGATGCCGACTCTATAGGCGGTCAATTCCTGCATCTGCTGCa > 7:926003/1‑140 (MQ=255)
ggcgGTATATTCCCTACAACCTGCTGGCGTCACTTTGTTCTATTATTGTCTACTGGTATCACTACACCCACAACGGCTAACCCATCCACCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCtgctgcgc < 6:957354/139‑3 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAACCTGATGACGCCTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 2:292029/1‑140 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 7:519301/1‑140 (MQ=255)
aaaGTGCGGGCGTCAATTTTTTCGATTCTTCTCTCCTGTTATCACTACAGCAACAACGGCGAAGGCATCCCGCGGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCa < 5:324333/140‑1 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCCAAAAGCCGTCGCa > 8:511304/1‑140 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGGCACTTCCTGCATCTGCTGCCCGGCGCAACGCCGTCGcc > 7:60220/1‑139 (MQ=255)
aCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCaaa > 3:937566/1‑140 (MQ=255)
ctgctgGCGTAACTTAGTTCGTTTCTGCGCTCGTGGTCTCACAACAGCCCCACCGCCGACCGCAGCCGGCCGGAAACTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAg < 7:292505/140‑1 (MQ=255)
ctgctgGCGACCATTAGTTCCTTTATTCTCTACTGTTAACACTACCCCCACACCGGCGAACGCATCCAGCCGAAAACTCAGCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAg < 5:732747/140‑1 (MQ=255)
cggcggccGTCACTTATTTCGATTCATCTCTACTGGTAACAATACCCCCACACCGGCGACCGCCGCCAGCCGAAACCGGATCACGACTCTATCGGCGGGCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAg < 5:328987/133‑1 (MQ=255)
ggTCAATTAGTTCTATGCTTCTCTAAGGGAATAACTCCTGCAACACGGCCCAACGCAGCCCGCCGGAAACTTTTGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGaa < 8:585336/139‑1 (MQ=255)
aCTTTGTTTGATGCTTCTCTACTGGTATAACTACTCCCCCACGGGCTACCGCACCCCGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg < 1:281305/140‑1 (MQ=255)
aCTTTGTACTATTCTTCTCTAAGGGTAGCCATCCACCCACAACGGGTAACGCCTCCCGCCGGAAACTGATCACGACTCTATCGGCGGTAACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg < 4:386080/140‑1 (MQ=255)
aCTTAGTTCGATCATACTCAACGGTAACCACTACCGCCACACCGGCGACCCCATCCAGCCGTAAACTTATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg < 5:877143/140‑1 (MQ=255)
ttAGTACGATTCTTCTCTACTGGTATCACTACACCACCACCGGCCAACGCAGCCCGCCGGAAACTTTTCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCg < 5:23294/140‑1 (MQ=255)
tAGTTCGATTATCCTCTACTGTTAGCAATACCCCCAAACCGGCGAACGCAACCCGCGGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGa < 7:927631/140‑1 (MQ=255)
gTTCGATTCTTCTCTACGGCTATCACTACACCCACACCGGCGAACGCATCCAGCCGGAAAGTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATg < 6:880519/140‑1 (MQ=255)
gctaTTCTTCTATACTGGTTTCACTACAGCCAACACGGCTAACGCATCCAGCCGGAAAATGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCa < 1:30398/137‑1 (MQ=255)
gcGATTATTCTCAACTGGAATCACAACAGCCACAACGCCCACCGCAACCAGCCGCAAACTCATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCa < 4:885097/139‑1 (MQ=255)
tttttcttcTCTCGTGGTATCATTCCAGCCCAAACGGCTAACTCTCCCAGGCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCat < 4:250015/137‑1 (MQ=255)
agtcctctcTAGTGGTATCACTACACCCAAACCGCCGACCGCATCCAGCCGCAAACAGATGACGACTCTATCGGCGGGCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat < 8:950734/135‑1 (MQ=255)
aTTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat > 1:961030/1‑140 (MQ=255)
aTTCTTCTCTACTGGTATAACTACAGCAAAAACGGCGAACGCATCCCGCCTGAAACTGATTACGACTCTATCGTCGGTCAATTACTGCATCTGCTGCACGGAGATAAGACGTCGCAAAGATGGGAACAGGCGagtaatat > 6:336649/1‑133 (MQ=255)
aTTCTTCTATACTGGTAACACTACACCCACACCGGCGAACGCATCCCGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat < 2:27530/140‑1 (MQ=255)
ttcttcTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATAtc > 4:846616/1‑140 (MQ=255)
tctctcCTGGTATCACTACAGCAACAACGCCTAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGc < 2:158199/140‑1 (MQ=255)
ctctACTGGTATCACTACAGACACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAATCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCt > 2:718306/1‑140 (MQ=255)
tctACTGGTATCACTACAGCCACATCTGCTAACGAATCCCGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTg < 2:461603/140‑1 (MQ=255)
cTGGTATCCCTACAGCAACAACGGCGAACGCATCCCGCCGGAAACTGATGACGAATCTATCGGCGGTCACTTCCTGCAGCTGATGCACGGCGAAAAGCCTGCGCAAAGCTGGGAACAGGCGATGCCTATCTCGCTGGTGc > 4:145317/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 2:978621/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 1:5089/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 1:942447/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 6:809761/1‑140 (MQ=255)
ttacACTACCGCCACCACGGCTACGCCAGCCCGCCGTAATCTGCTGACGACTCTATCGGCGGGCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTa < 2:176127/137‑1 (MQ=255)
taacACTACCCCCACACCGGCGACCGAATCCCGCCGGAAACTGAGCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTa < 3:505056/137‑1 (MQ=255)
aaTCACTACCGCCACACCGGTGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTa < 1:842204/139‑1 (MQ=255)
aaTCACTACAGCCACACCGGCTAACGCATCCCCCCGCAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTa < 2:566411/139‑1 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 2:147439/1‑140 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 2:1033425/1‑140 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 8:248479/1‑140 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGATGGGAAAAGGCGATGCATATCTCTCTGGTGCTGTAc > 8:488915/1‑140 (MQ=255)
tCACTACAGCCACAACGGCGAACGCAGCCAGCCGGAAACTGATGACGACTCTCTCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGAAGCATATCTCGCTGGTGCTGTACg > 2:853762/1‑140 (MQ=255)
acacaACCGCCACACCGGCTAACCCAACCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACg < 6:638422/139‑1 (MQ=255)
acACTACACCAAAAACGGCTAACGCACCCAGCCGCAAACTCATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACg < 2:537871/139‑1 (MQ=255)
aCTACAGCCACAAGGGCTAACGAATCCACCCGTAAACTGAGGACGACTCTATCGGCGGTCACTTCCTGCATATGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc < 2:104212/140‑1 (MQ=255)
tACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTCCGCCGa > 4:687947/1‑140 (MQ=255)
tACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGa > 3:709653/1‑140 (MQ=255)
tACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGa > 8:655976/1‑140 (MQ=255)
aGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACTACTCTATCGGCGGTCACTTCCTGCATCAGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca > 8:826384/1‑140 (MQ=255)
aGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAACGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca > 1:308899/1‑140 (MQ=255)
aGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCTTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGTTGCTCTACTCCGAacc > 8:403082/1‑139 (MQ=255)
aGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca > 3:869502/1‑140 (MQ=255)
aGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTGCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAACGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca > 1:359276/1‑140 (MQ=255)
ccACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACg > 3:803236/1‑140 (MQ=255)
ccACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACg > 5:726467/1‑140 (MQ=255)
acaACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGTAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAg > 8:149073/1‑140 (MQ=255)
caACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCTCGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGATGTACGCCGAACACGAGt > 2:664797/1‑140 (MQ=255)
caACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGATCACGAGt > 7:701954/1‑140 (MQ=255)
caACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGt > 8:846595/1‑140 (MQ=255)
aaCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGtt > 8:173651/1‑140 (MQ=255)
aaCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGAGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGtt > 7:535253/1‑140 (MQ=255)
aCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCAATGCATATCTCGCTGGTGCTGTACGACGAACACGAGttt > 1:846268/1‑140 (MQ=255)
aCGGCGAACGCAGCCCGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGttt < 1:573918/140‑1 (MQ=255)
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CGCACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTT > NZ_CP022686/3925153‑3925428
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
