Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F13 I0 R1
|
284 |
16785.3 |
10492142 |
98.3% |
10313775 |
134.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,925,289 |
A→C |
14.2% |
N156T (AAC→ACC) |
prpC → |
2‑methylcitrate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,925,289 | 0 | A | C | 14.2%
| 311.8
/ 9.0
| 164 | N156T (AAC→ACC) | prpC | 2‑methylcitrate synthase |
| Reads supporting (aligned to +/- strand): ref base A (98/37); new base C (2/26); total (100/64) |
| Fisher's exact test for biased strand distribution p-value = 7.44e-11 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 172 total aligned reads displayed.
GCGCACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGT > NZ_CP022686/3925152‑3925426
|
gcgcACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAACCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACaa > 6:177250/1‑138 (MQ=255)
gcgcACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTGTACTGGTATCACTACAGCCACaa > 3:800993/1‑138 (MQ=255)
gcgcACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACaa > 3:1172428/1‑138 (MQ=255)
gcgcACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGGTTCTGGTGCGCGGGATATTGCCGACACACTGCTGGCGTCACTTAGTTCGAGTCTTCGCTACTGGTATCACTACCGCCACaa > 4:329316/1‑138 (MQ=255)
ccGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACCCCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCg > 7:78655/1‑138 (MQ=255)
ccGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACCCCGTATCTGGGGCGCGGGATATTGCCGACAACCTGCTGGCGTCACTTAGTTCGATTATAGACTACTGGTATCACTACAGCCACAACGGCg > 7:403128/1‑138 (MQ=255)
ccGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTTCGCGGGAGATTGCAGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCg > 7:974208/1‑138 (MQ=255)
ccGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCg > 8:549650/1‑138 (MQ=255)
gCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGacc > 4:1286755/1‑136 (MQ=255)
gCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAAc > 4:1286752/1‑138 (MQ=255)
gTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAATATTGGCACACCGTTTCTGGTGAGCGGGATATTGCCGACAACATGCTGGAGTCACTTATTTCTATTATTCTCAAATGGTAAAACTACAGAAACAACGCCGAACGc > 7:1225908/1‑138 (MQ=255)
gTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGCCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGCACGc > 4:1140739/1‑138 (MQ=255)
gTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGc > 2:245109/1‑138 (MQ=255)
tttCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACCACGGcgcacgca > 5:591059/1‑138 (MQ=255)
tttCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCa < 8:683056/138‑1 (MQ=255)
tttCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGGGCGCGGGATATTGCCGACAAACTGCGGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCa < 3:462561/138‑1 (MQ=255)
cgcgCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATccc > 2:555816/1‑137 (MQ=255)
gcgcTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAg > 7:1146252/1‑138 (MQ=255)
ctctGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCg < 4:97955/138‑1 (MQ=255)
cTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCg < 2:14984/138‑1 (MQ=255)
cGGCTGCACGCTGCCAGAAAAAGCGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGa > 4:612719/1‑138 (MQ=255)
cGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGa < 2:613700/138‑1 (MQ=255)
gCTGCCTGAAAAAGAGGGGCACACCGTTTCTGGTGGGCGGGATTTTGCCGACAAAGTGCGGGCGTCAATTTGTTCTATTCTTCTATACTGTTATCACTACAGCCACAACGGCGAACGCATCCAGCGGGAAACtgatga < 3:1080029/138‑1 (MQ=255)
cTGCAATAAAATGTGGGGAACACCGTTTCTGGTGCGTGGTATATTGCATAAAAACTGCTGGCGTCACTTTGTTCTATTCTTCTCTACTGGTATCACTACAGCCACAACGGCTAACTCATCCAGCCGGTAACTTATgac < 2:1268639/138‑1 (MQ=255)
ccAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATgacgcc > 8:650370/1‑136 (MQ=255)
ccAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCAAGCCGGAAACTGATgacgac > 1:479477/1‑138 (MQ=255)
ccAGAAAAAGAGGGGCACACCGTGTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCCCAACGGCGAACGCATCCAGCCGGAAACTGATgacgac > 8:232086/1‑138 (MQ=255)
aGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGActc > 4:169821/1‑138 (MQ=255)
aGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGActc > 6:5143/1‑138 (MQ=255)
cgcggggAACACCGTTTCTGGTGCGCGGTATATTGCCGACAAAGGGCTGGCGACATTTTGTTCTATTCTTCTCTCCTGGTATCACTACCCCCACAACGGCTAACGAATCCCGCCGGAAACTGAGGACGCCTCTATcgg < 2:1299828/135‑1 (MQ=255)
cgggtCACCCCGTGTCTGGTGCGAGGGCTATTCGCCAAAAACTGCTGGCGTCACTTACTTCTATTCTTGTCTATTGTTATAACAACCGCAACAATGGCGACCCCATCAAGCCGGAACGTGATGACGACTCTATcggcg < 4:639633/137‑1 (MQ=255)
cgggcCACACCGTTTCGGGGGCGCGGGATATGGCCGACAAACTGCTGGCGTCACTTAGTTCTATTCTTCTCTCCTGGTAGCACAACAGCCAAACCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATcggcg < 4:1063474/137‑1 (MQ=255)
agGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCa < 5:1029044/105‑1 (MQ=255)
agGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCa > 6:1029044/1‑105 (MQ=255)
gCACACCGTTTATGGTGAGCGGCAAATTGCCGACAAAATGCTGGAGACACTTAGTTCGATTCTTCTCTACTGGAATCACAACAGCCACAACGGCGAACCCATCCAGCAGCAAACTGATCACGACACTATCAGCGGtac > 2:699113/1‑136 (MQ=255)
cacGGTTTCTGGTGGGGGGTATATTGCCTACAAACTGCTGGGGTAACTTATTTCTATTATTCTATACTGTAATCACTACACCCAAAACGGCTACCTCACCCAGCCGTAAACTTATGACGACTCTATCGGCGGTCACtt < 6:1130374/138‑1 (MQ=255)
cacCGTTTTTGGGGCGCGGTATATTGCCGACAAACTGCTGGGGTCACTTAGTTCTATTCTTCTCTACTGTTATCACTACAGCCACAACGGCGACCGCATCCCCCCGGAAACTTAGGACGACTCTATCGGCGGTCACtt < 6:888659/138‑1 (MQ=255)
cacCGTTTCTGGTGGGCGGTATATTCCCGACAAACTGCGGGCGTCACTTAGTTCGATTCTTCACTACTGGTATCACTACCCCCACACCGGCCAACGCACCCACCCGGAAACTGATCACGACTCTATCGGCGGTCACtt < 2:257381/138‑1 (MQ=255)
ccgttttCTGGGGCGGGGGATATTGCCTAAAAAGTGCGGGGGTCATTTAGTCCGTTCAGTCTCAACGGTTATCAATACCGCCACACCGGCTAACGCAACCCGCCGTAAACTTCTGACGACTCTATCGGCGGTCACTTc < 6:18701/134‑1 (MQ=255)
ggTTTCTGGTGCGGGGGATATTGCCGAAAACCTGCTGGCGTAACTTAGTTCTATTCTTCTCTACTGGTATCACTACAGCCACACCGGCGAACGCACCCACCCGGAAACTGACCACGACTCTATCGGCGGTCACTTCCt < 6:957800/137‑1 (MQ=255)
ggTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGGGTCACTTAGTTCTATTCTTCTCTAAGGGTATCACTCCAGCCACACCGGCGAACGCAACCAGCCGGAACCTGAGGACGACTCTATCGGCGGTCACTTCCt < 3:1046113/137‑1 (MQ=255)
ggTTTCTGGTGCGCGGGATATGGCCGACAAACGGCTGGCGTCACTTTGTTCTATTCTTCTCAACTGGTATCACTACAGCCACACCGGCGAACGCATCCAGCCGCAAACTGATGACGACTCTATCGGCGGTCACTTCCt < 1:346905/137‑1 (MQ=255)
ggTTTCTGGGGCGGGGGATATGGCCGACACAAGGGTGGCGTCATTTTGTTCGTTTTTTCTATAGTGTTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCt < 8:1002365/137‑1 (MQ=255)
tttCTGGTGCGCGGTATATGGCCGAAAAACTGCTGGCTCCACTTAGTTCGATTCTTCTCTACTGGTATCACAACACCCACAACGCCTAACGCATCCAGCCGGAAACTGATCACGACTCTATCGGCGGTCACTTCCTGc < 3:372613/138‑1 (MQ=255)
tCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCAt > 3:579422/1‑138 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATctgctg > 1:954621/1‑138 (MQ=255)
gcgGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGAATCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCCGCCGGAAACTGATGACGCCTCTATCGGCGGTCACTTCCTGCATAtgcagcc > 5:293270/1‑137 (MQ=255)
gagggATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCACTACTGGTATAAATACATCCAAAACGGCTCACGCATCCACCCGGAAAAATATGACGACTCTATCGGAGGTGCCTGCCTGCAGAtgctgcc > 6:604718/3‑137 (MQ=255)
cgGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGCACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCAc > 8:406695/1‑138 (MQ=255)
cgGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCCCTTCCTGCATCTGCTGCAc > 2:1221177/1‑138 (MQ=255)
acacacTGCTGGCGTCACTTAGTTCGATTCTTCTCAACTGTTATCCCACCAGCCAAACCGCCTAACCCATCCCCCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGt < 6:260606/138‑1 (MQ=255)
aaaCTGCTGGCGTTACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 1:1348694/1‑138 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGACCGCATCCAGCCGGAAACTGATTACGACTCTATCGGCGGTCACGTCCTGCATCTGCTGCACGGCGAAAAGCCTTCg > 5:522526/1‑138 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 2:213027/1‑138 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 6:379761/1‑138 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 1:107891/1‑138 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACAACACCCACAACGGCGAACGCATCCAGCCGGAAACTGAAGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 6:378838/1‑138 (MQ=255)
aCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCCGCCGGAAACTGATGACGACTCTATCTGCGGTCCCTTCCTGCATCTGCTGCCCGGCGAAAAGCCGTCGcc > 4:157391/1‑137 (MQ=255)
aCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCa > 6:851656/1‑138 (MQ=255)
gtgctgGCGCCACTTTTTGCGTTTCTTCTCTCGTGGTAGCCCTCCAGCCACACCGGCGACCGCCTCCCGCCGCAAACTGATCACGACTCTCTCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCaa < 7:232086/137‑1 (MQ=255)
ctgctcGCGTAAATTTGTTCTATTCTTCTTTACTGGTAACACAACTCCCACAACGGCCATCGCAACCCCCCGGAAACTTATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCaa < 3:176185/138‑1 (MQ=255)
agtttgTTCGAGTCTTCTCAACTGTTCTCACTAACGCCACACCGGCTAACGCATCCAGCCGGAAATTGATGACTACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGaaaa < 8:647058/133‑1 (MQ=255)
aCTTATTTCGTTTCTTCTCTACTGTTATCACTACAGCCACAACGGCTAACGCATCCAGCCTTAAACTTATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGaaaa < 5:1229562/138‑1 (MQ=255)
aCTTAGTTCGATTCTTCTCTACTGTAATCACTACTGCCACATCGGCGAACCCACCCACCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGaaaa < 6:162302/138‑1 (MQ=255)
aCTTAGTGCTTTTCTTCTATACGGTTAACACAACACCCACAACGGCTATCGCATCCAGCCGTAAACTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGaaaa < 1:1266010/138‑1 (MQ=255)
tCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGACCGAAACCAGCCGTAAACTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATg < 4:1299988/138‑1 (MQ=255)
aTTCTTCTCTACTGTTATCACTACAGCCACAACGGCCACCGCATCCAGCCGTAAACTCAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCat < 4:916298/138‑1 (MQ=255)
aTTCTTCTCTACTGGTATCACACCCGCCACACCGCCGAACGCAGCCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCat < 4:670897/138‑1 (MQ=255)
aTTCTTCTCTACTGGAATCACACCAGCCACACCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCat < 7:549650/138‑1 (MQ=255)
tcttctCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat > 3:1249675/1‑138 (MQ=255)
tcttctCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat > 3:154138/1‑138 (MQ=255)
tcttctCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat > 5:993637/1‑138 (MQ=255)
cttctCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGAGAAAAGCCGGCGCAACGCTGGGAAAAGGCGATCCATAtc > 2:321705/1‑138 (MQ=255)
tctcTACTGTAATCACTACATCACCACCGGCGAACGCACACCCCCGTAAACTTATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCTCAAAGCTGGGAAAAGGCGATGCATAtctc < 7:61347/138‑1 (MQ=255)
tctcTACTGGTATCACACCCGCCACACCGGCGAACGCATCCAGCCGGAACCTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATAtctc < 6:555584/138‑1 (MQ=255)
ctctACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCg > 4:940333/1‑138 (MQ=255)
ctctACTCGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGACGCAAAGCTGGGAAAACGCGATGCATAtctcc > 7:152147/1‑137 (MQ=255)
tctACTGGTATCAGTACAGCCAAAACGGCTAACGCATCAAGCGGTAAACTTTTGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGc < 1:703950/138‑1 (MQ=255)
tctACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGc > 4:912757/1‑138 (MQ=255)
catACTGTCATAACTACACCCACAACGGCGAACGCACCCAGCCGTAAACTGTTGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGc < 1:697907/136‑1 (MQ=255)
ggTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGCCTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGc > 1:237177/1‑138 (MQ=255)
ggTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGc > 3:1176400/1‑138 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 8:900870/1‑138 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTAGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 2:1143888/1‑138 (MQ=255)
acaatACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTa < 3:965733/134‑1 (MQ=255)
cACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCTCTTCCAGCATCTGCTGATCGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGTCGATGCATATCTCGCTGGTGCTGTAc > 8:398263/1‑138 (MQ=255)
cACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 8:638981/1‑138 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACg > 7:544852/1‑138 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACg > 6:708810/1‑138 (MQ=255)
cAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCgc > 3:613888/1‑137 (MQ=255)
cAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGa > 3:743782/1‑138 (MQ=255)
cAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGa > 5:603426/1‑138 (MQ=255)
cAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCGGTccgccgc > 4:7202/1‑137 (MQ=255)
ccACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGaccc > 1:1038650/1‑135 (MQ=255)
ccACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca > 4:509713/1‑138 (MQ=255)
ccACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca > 5:458321/1‑138 (MQ=255)
ccACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca > 2:1350899/1‑138 (MQ=255)
acaACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGACCACg > 5:565402/1‑138 (MQ=255)
acaACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGATGGTGCTGTACGCCGAACACg > 5:67118/1‑138 (MQ=255)
aaCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAg > 5:577641/1‑138 (MQ=255)
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GCGCACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGT > NZ_CP022686/3925152‑3925426
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
