Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F35 I0 R1
|
271 |
8871.0 |
10354886 |
98.4% |
10189207 |
136.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,925,289 |
A→C |
10.6% |
N156T (AAC→ACC) |
prpC → |
2‑methylcitrate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,925,289 | 0 | A | C | 10.6%
| 376.3
/ 7.2
| 199 | N156T (AAC→ACC) | prpC | 2‑methylcitrate synthase |
| Reads supporting (aligned to +/- strand): ref base A (123/47); new base C (2/25); total (125/74) |
| Fisher's exact test for biased strand distribution p-value = 9.62e-11 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 215 total aligned reads displayed.
ATGCGCACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTT > NZ_CP022686/3925150‑3925428
|
tGCGCACCGGCGTTTCCGCGCTCGGCTGCCCGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAAc > 5:703768/1‑140 (MQ=255)
cgcACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACgg < 3:609293/140‑1 (MQ=255)
cACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGCCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCg > 3:1286851/1‑140 (MQ=255)
cACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCg > 2:859947/1‑140 (MQ=255)
cACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCg > 1:958239/1‑140 (MQ=255)
aCCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACGGTTTATGGTGCGCGGGATATTGCCGACAAACGGCTGGCGTCACTTAGTTCGATTCTGCTCTACTGGTATCACTACAGCCACACCGGCGa > 8:957888/1‑140 (MQ=255)
aCCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACCAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGa > 2:50120/1‑140 (MQ=255)
aCCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGa > 1:567576/1‑140 (MQ=255)
aCCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGAGTCTTCTCTACTGGTATCACTACAGCCACAACGGCGa > 2:683223/1‑140 (MQ=255)
cGGCTTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCTGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACACCCACAACGGCGAAc > 4:703547/1‑140 (MQ=255)
tttCCTCGCTCGGCTGCACGCTGCCAGAAAAACAGGTGCACACCGATTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCAATACATCCACAACGGCGAACGCATc < 1:330018/140‑1 (MQ=255)
tCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGTCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTAATGGTATAACTAAAGCCACAACGGCGAACGCATCCa > 6:843021/1‑140 (MQ=255)
cTCGGCGGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGa < 6:1267192/140‑1 (MQ=255)
cGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGaaa < 5:800393/140‑1 (MQ=255)
cGGCTGAACGCTGCCCTAAAAAGAGGTGCACACCGTTTCTGGTGCGCGGGATCTGGCCGACAAACTGCTGTCGGCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGAATCCAGCCGTaaa < 8:805243/140‑1 (MQ=255)
ggCTGCCTTAAAAAGCGGGCCACAGCTTTTCTGGGGCGGGGTATATTGCCGACAAACTGCGGGCGTAAATTTGGTCGTTTCTTTTATAGTGTTATCACAAAAGCCACAACGGCGAACGCATCCAGCCGTAAAATTATgac < 8:432465/139‑1 (MQ=255)
ggCTGCCATAAAAAGTGGGGCACACGGTTTCTGGTGCGCGGTATATTGCCTACAAACTGCTGGCGTAACTTAGTTCGATTCTTCTCTACTGTTATCAATACAGCCACAACGGCGAACGCATCCTGCCGTAAACTGATgac < 6:1045627/139‑1 (MQ=255)
tGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGACCGCATCCAGCCGGAAACTGATgacgac > 8:299678/1‑140 (MQ=255)
tGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATgacgac > 2:338851/1‑140 (MQ=255)
ttgggAACACCGTTTGTGGTGCGTGGGATATTGCCCAAAAACTGCGGGGGTAACTTTTTACTATTCTTCTCTACTGTTATCAATACAGCCACACGGGCTAACGCATCAAGCCGTAAACTGATGACGACTCTATCGGCGGt < 6:28932/138‑1 (MQ=255)
atggtcacaCCGTTTCTTGTGAGCGGTTTATTCCCGACAAACTGCTGTCGGAACTAAGTTCGATTATTCTATACTTTTATCACAACAGCCACAACGGCGAACGAATCACGCCGGAAACTGCTGACGACTCTATCGGCGGt < 2:593606/135‑1 (MQ=255)
agGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGt > 5:281589/1‑140 (MQ=255)
ggccacaCCGTTGCTGGTGCGGGGGATATTGCCGACAACCTGCTGGCGTCACTTAGTTCGATGCTTCTCTACTGGTACCACTACACCCACAACGGCCAACGCAGCCAGCCGCAAACTGATGACGACTCTATCGGCGGTCa < 4:879268/137‑1 (MQ=255)
cGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGC‑GTCACTTCCTGCa > 5:1102260/1‑140 (MQ=255)
tCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATct > 3:211462/1‑140 (MQ=255)
gTGCGCGGGATATTGCCGACAAACTGCTGGCGTCTCTTAGTTCGATTCGTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACACTATCGGCTGTCACTTCCTGCATctgctg > 6:532513/1‑140 (MQ=255)
ggggggtatatTGCCTCCAATCTGCTGGCGGCACTTAGTTCGATTCTTCCCTACTGGTATCACACCAGCCACAACGGCTAACCCATCCCGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCa < 2:109493/133‑1 (MQ=255)
gggggggATATTGCCGAAAAACAGCTGGCGTCATTTAGTTCTTTTATTCTCTACTGGTATCAAAACAGCCACAAGGGCTAACGCCTCCAGCGGTAAACTGACGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCa < 6:59922/136‑1 (MQ=255)
gcccgGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCAACCAGCCGGAAACTGATGACGACTCAAACGCCGGTCACTTCCTGAATCTGCTCCa > 6:239341/4‑140 (MQ=255)
cgGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACgg > 8:1209772/1‑140 (MQ=255)
cgGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACgg > 5:225422/1‑140 (MQ=255)
cgGGATATTGCCGACAAACTGCTGGCGTCACTTACATCGATTCTACTCTACTTGAATCACTACAGCCACAACGGCGACCGCATACAGCCGCAAACAGATGACGACTCAATCGGAGGTCACTTCCTGCATCTTCTGCAccg > 7:701659/1‑138 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCGTGCATCTGCTGCACGGCGAAAAGCCTTCg > 8:1125346/1‑140 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCTTCTGCTGCACGGCGAAAAGCCGTCg > 5:484904/1‑140 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 7:880323/1‑140 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 7:427971/1‑140 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATAACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGGCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 4:269099/1‑140 (MQ=255)
aCAAACTGCAGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACCGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCAGTCg > 1:476666/1‑140 (MQ=255)
aaaCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCa > 1:735393/1‑140 (MQ=255)
aCTTCGTTCGATTCTTCACTCCTGGTAGAACTACACCCACACCGGCCAACGCAACCAGCCGTAAACTGATGACGACTCTATCGGCGGGCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg < 6:432166/140‑1 (MQ=255)
aCTTCGTTCAATCCTTCTCTCCGGGGATCACTACAGCCAAACGGGCTAACTCACCCCGCCGGAACCTTATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg < 6:1126273/140‑1 (MQ=255)
ttAGTTCTATTCTTCTCTACTGTTATCTCAACAGCCACAACGGCTAACGCATCCAGCCGTAAAGTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCg < 7:446036/140‑1 (MQ=255)
ttAGTTCGATTCTTCTCTACTGGTATCCCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCg > 5:144018/1‑140 (MQ=255)
ttAGTGCGATTCTGCTCTACTGGTATCACTCCCGCCCCAACGGCTAACGCATCCCCCCGGAACCTGAGCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCg < 7:276975/140‑1 (MQ=255)
gttgtaTTCTTCTCTACTGTTATCACTACAGCCACACCGCCGACCGCAGCCCGCCGGAAACTGAGCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATg < 1:403802/135‑1 (MQ=255)
gTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGCCGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATg > 4:490758/1‑140 (MQ=255)
gcGATTCTTGTATACTTGTAACACTACAGCCAAACCGTACAACCAATCCATCCGAAAACTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCa < 3:30093/139‑1 (MQ=255)
tttcttcTCTACTGGTATCACTACAGCCCCAACGGCGAACGCATCCAGCCGGAAACTGATGTCGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat < 3:163142/139‑1 (MQ=255)
atgcttctGAACTGGTTTCAATACAGCCACACCGCCGAACGCCACCAGCCGGAATCTGAGGTCGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat < 6:970844/137‑1 (MQ=255)
aTTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCCTCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGACGGCTCAAAGCTGGGAAAAGGCGATGCatat > 6:72348/1‑140 (MQ=255)
aTTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat > 8:465540/1‑140 (MQ=255)
ttcttaTCTACTGGTATCACTACAGACACAACGGCTAACGAATCCAGCCTGAAACTGATTACTACTATATAGTCGGTCAATTACAGCATCTTCTGCACGGCGAAAATCCGTCGCAAATCTGGTAAAAGGCTATGCATAtc > 3:941459/1‑140 (MQ=255)
tctcGACTGTTATCCATACAGCCACAACGGCGAAGGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGc < 6:624038/140‑1 (MQ=255)
ctctACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATTTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCt > 2:1284033/1‑140 (MQ=255)
ctctACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCt > 6:321576/1‑140 (MQ=255)
ctctACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTACATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGCTGCATATCTCGCt > 2:137481/1‑140 (MQ=255)
ctctACTGGTATCACTACAGCCACAACGGCGAAAGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCt > 2:56063/1‑140 (MQ=255)
tctACTTGTATCACTACCCCCACACCGGCGAACGAATCCAGCCGTAAAATGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTg < 4:384258/140‑1 (MQ=255)
gctACTGGAATCACAACACCCACAACGTCGAACGCAGCCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTg < 5:403577/139‑1 (MQ=255)
actACTGTTATCACAACACCCACACGGGCTAACTCATCAACCCGCAAAGTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTg < 3:1019186/139‑1 (MQ=255)
actACTGGTATCACAACACCCACAACGCCGAACGCATCCAGCCGGAACCTGACGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTg < 1:1292319/139‑1 (MQ=255)
tACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCTTCGCAAAGCTGGGAAAATGCGATGCATATCTCGCTgat > 2:779627/1‑138 (MQ=255)
cTGGTATCACTACATCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAACGGCGATGCATATATCGCTGGTGc > 8:650434/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGCCGCCTCTATCGGCGGTCCCTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 4:1147902/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACTACTCTATCGGAGGTCACTTCCTGCATCTGCTGCACGGCGAAACGCCGTCGCAAAGCTGGGAAAAGGCGATGCTTATCTCGCTGGTGCTGt > 7:1014938/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGTCGGTCACTTCCTGCATCTGCTGCACGTCGACAAGCCGTCGCAAAGCTGGTAAACGGCGATGCATATCTGGCTGGTGCTGt > 4:25025/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCTCTTCCTGCATCTGCTGCACGGCGAAAAGCCTTCGCAAAGCTGGGAAAAGGCCATGCATATCTCGCTGGTGCTGt > 7:1123316/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 1:1135444/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 6:1028083/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 5:519534/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 2:1150796/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 2:391326/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 3:407138/1‑140 (MQ=255)
ctATCACAACAGCCACAACGGCGAACGCAACCAGCCGGAAACTGATGAAGACTCTATCGTCGCTCACTTCCTGCAACTGCAGCACGGCGAAAAGCCGTCGCAAAGCTGTGAAAAGGATATGCATATCTCGCAGGAGCttt > 2:831300/2‑138 (MQ=255)
aTCACAACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGATGGTGCTGTAc > 6:794038/1‑140 (MQ=255)
tCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCa < 7:372353/99‑1 (MQ=255)
tCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACg > 3:330453/1‑140 (MQ=255)
acagtACAGCCCCAACGGCTAACGCATCCCGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACg < 5:762072/136‑1 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 1:1025339/1‑140 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 7:990308/1‑140 (MQ=255)
tACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGa > 4:485202/1‑140 (MQ=255)
cAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGCGAAAAGGCGATGCAGATCTCGCTGGTGCTGTACGCCGaaa > 4:311270/1‑139 (MQ=255)
cgCCCCAACGGCGACCGCATCCAGCCGTAACCTTCTGCCGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca < 7:306192/139‑1 (MQ=255)
cgCCAAACCGGCTAACGCATCCAGCCGTAAACTTATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca < 7:561445/139‑1 (MQ=255)
acccACAAGGCCGAACGCATCCAGCCGCAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca < 4:1245431/138‑1 (MQ=255)
accacaaaCGGCTAACCCATCCACCCGGAAAATCATGACGACTCTATCGGCGGACACTTCCAGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca < 6:375735/134‑1 (MQ=255)
aGCCACACCGGCTAACCCATCCTGCCTTAAACTTAGGACGACTCTATCGGCGGGCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca < 7:463370/140‑1 (MQ=255)
aGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGaccc > 8:547648/1‑137 (MQ=255)
aGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca > 2:957767/1‑140 (MQ=255)
aGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca > 4:818406/1‑140 (MQ=255)
gCCACAACGGCTAACTCTCCCAGCGGCAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAacac < 7:99682/140‑1 (MQ=255)
cccACAACGGCTAACGACTCCACCCGTAAACTTATGACGACTCTATCGGCGGTCACTTCCTTCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAacac < 5:1151594/139‑1 (MQ=255)
ccACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACg > 2:982905/1‑140 (MQ=255)
caACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGACACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGTCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGt > 7:584714/1‑140 (MQ=255)
aaaCGGCGAACGCATACAGCCGGAAACAGATGAAGACTCTATCGGCGGTCACTTACTGCATCTTCTGCACGGCGAAAACCCCTCGCAAAGCTGGGAAAATGCGATGCATATATCGCTGGTGCTGTAAGCCGAACACGAGt > 2:1184679/2‑140 (MQ=255)
aaCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGTTGCATATCTCGCTGGTGCTGTACGCCGAACACGAGtt > 3:818164/1‑140 (MQ=255)
aaCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGtt > 2:717583/1‑140 (MQ=255)
aCGGCGAACGCATCCAGCCGGAAACTGATGACGCCTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGATAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGttt > 3:144854/1‑140 (MQ=255)
aCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACTGCGAAAAGCCGTCGCAAAGCTGTGAAAAGGCGATGCATATCTCGATGGTGCTGTACGACGAACACGAGttt > 4:1074322/1‑140 (MQ=255)
aCGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGttt > 8:1078519/1‑140 (MQ=255)
|
ATGCGCACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTT > NZ_CP022686/3925150‑3925428
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
