Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F2 I0 R1
|
184 |
7301.6 |
8720326 |
98.4% |
8580800 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,925,289 |
A→C |
14.4% |
N156T (AAC→ACC) |
prpC → |
2‑methylcitrate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,925,289 | 0 | A | C | 14.4%
| 285.0
/ 7.6
| 156 | N156T (AAC→ACC) | prpC | 2‑methylcitrate synthase |
| Reads supporting (aligned to +/- strand): ref base A (81/47); new base C (2/25); total (83/73) |
| Fisher's exact test for biased strand distribution p-value = 5.21e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 160 total aligned reads displayed.
ATGCGCACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTT > NZ_CP022686/3925150‑3925428
|
aTGCGCACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACaa > 7:23944/1‑140 (MQ=255)
gcgcACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACaa > 5:440587/1‑138 (MQ=255)
cccctgCGTGTCCGCGCTCGGCTGCACGCTGACCGAAAAAGAGGTGCACACCGTTTCTGGTTCTCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGGTCGATTATTCTCTACTGGTAGCCCTACAGCAACACCGGCg > 8:836173/6‑140 (MQ=255)
cACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGGTTCTGGTGCGCGGGATATTGCCGCCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCg > 4:1072561/1‑140 (MQ=255)
aCCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCgc > 8:818637/1‑139 (MQ=255)
aCCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGa > 8:398886/1‑140 (MQ=255)
ccGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGaa < 2:397909/140‑1 (MQ=255)
ccGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGaa < 7:789927/140‑1 (MQ=255)
cGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACCCCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACGGGTATCACTACAGCCACAACGGCGAAc > 7:186974/1‑140 (MQ=255)
cGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGAGCGGGATATTGACGACAAACTGCTGGCGTCACTTATTTCTATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAAc > 7:281722/1‑140 (MQ=255)
gCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTGTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCCCAACGGCGAACGc > 3:1022694/1‑140 (MQ=255)
tttCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATc < 1:1073387/140‑1 (MQ=255)
tttCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGGCACTTAGTTCGATTCTTCTCTACTGGTATCCCTACAGCCACAACGGCGACCGCATc < 8:246527/140‑1 (MQ=255)
cgcTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGGCACTTAGTGCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCg < 7:803824/140‑1 (MQ=255)
cGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGaaa < 8:700817/140‑1 (MQ=255)
cGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGaaa < 4:913401/140‑1 (MQ=255)
cGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGa < 5:135948/138‑1 (MQ=255)
ggcggCCATAAAAAGTGGGTCACACGGTTTCTGGTGGGCGGTATTTTGCCGAAAAACTGGTGGCGTAACTTTGTTCTATTCTTCTCTACTGGTATCACTACAGCCACACCGGCTAACGCATCCAGCCGTAAACtgatg < 6:653998/134‑1 (MQ=255)
cGCTGCCATAAAAAGCGGGCCACACCGTTTCTGGTGCGCGGTATATTGCCGACAAACTGATGGCGTCAATTTGTTCGATTCTTCTATACTGTTTTCACTACAGCCACACCGGCTAACGAATCCAGCCGGAAAGTGATgac < 4:273295/140‑1 (MQ=255)
cGCTGCCATAAAAAGAGGGGCACCCCGTTTCTGGTGCGCGGGATTTTGCCGACAAACTGCTGGCGTCACTTAGTTCTATTCTTCTCTACTGGTATCAATCCAGCCACAACGGCGAACGCATCCAGCCGTAAACtgatc < 6:937990/138‑2 (MQ=255)
cGCTGCCAGAAAACTAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGAAAAACTGCTGGCGTCAATTAGTTCTATTTTTCTCTACTGTTATCAATACACCCACAACGGCGAACTAATCCAGCCGTAAACTGAGgac < 4:346881/140‑1 (MQ=255)
gtGCCATAAAAAGAGGGGCACAGCGTTTCTGGTGCGCTGGATATTGCCTACAAAGTGGTGGCGTCACTTTGTTCTATTCTTCTCTAGTGGTATCAATACCGCCACACCGGCGAACGCATCCAGCCGGAAACTTATgacga < 4:408001/139‑1 (MQ=255)
tGCCAGAAAAAGAGGGGCACCCCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCCGCCGGAAACTGATgacgac > 4:996247/1‑140 (MQ=255)
tGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATgacgac > 4:546996/1‑140 (MQ=255)
tGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTGAGTTCGATTCTTCTCGACTGGGATCACTACAGCCACAACGGCGACCGCATCCAGCCGGAAACTGATgacgac > 2:625661/1‑140 (MQ=255)
ccAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCCTCCAGCCGGAAACTGATGACGActc > 1:97160/1‑140 (MQ=255)
ccAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGActc > 1:551009/1‑140 (MQ=255)
gAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTAt > 3:1052698/1‑140 (MQ=255)
agGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGCCAACCTGCTGGCGTCACTTAGTTCGATTGTTGTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTTATGAGGACGATATcggcggg > 7:830792/1‑139 (MQ=255)
agGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGt > 1:6365/1‑140 (MQ=255)
ggggCACCCCGTTTCTGGGGCGGGGGAAATTGCCGACAACCTGCGGGCGTCACTTAGTTCGATTCTACTCAACTGGTATAACACCCGCCACACCGGCGAACGCATCCCGCCGTAAACTGATCACGACTCTATcggcgg < 6:14979/138‑1 (MQ=255)
gggCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATACTTATCTACAGGTATCACTACAGACACAACTGCGAACGCAACCAGCCGCAAACTGAAGACGACACTATCGGCGGt > 5:391201/1‑138 (MQ=255)
ggccacaCGGTTTCTGGGGCGCGGTATAGGGCCGAAAAACTGCGGGCGTCACTTAGTTCGATTCTTCTATACTGGAATCACTACAGCCACAACGGCCAACGCATCCCGCCTTAAACTGATGACGACTCTATCGGCGGTCa < 2:216746/137‑1 (MQ=255)
ggcaacccGTTGCTGGGGCGCGTGATATTGCCGACAAACTGCTGGCGACACTTAGTTCGATCCTACTATACTGGTATCCCAACACCCACAACGCCGAACCCTTCCCCCCGGAAACTGATGACGACTCTATCGGCGGTCAc < 4:451523/134‑1 (MQ=255)
cacCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGCACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACtt > 5:314160/1‑138 (MQ=255)
cacCGTTTCTGGAGCGCGGGATATTGCCGACAATCTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTTTAACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACACAAGACGACTATATCCGCGGacacaa > 5:1019276/1‑136 (MQ=255)
cGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGc > 8:303705/1‑140 (MQ=255)
tttCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCAt > 3:497559/1‑140 (MQ=255)
tCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATct > 3:273423/1‑140 (MQ=255)
gcggGGTATATTGCCGACAAACTGCTGGCTTAAATTAGTTCGATTCTTCTCTACTGGTATCACTACACCCACAAGGGCTAACGCAGCCAGCCGTAAAGTTATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCa < 1:1089181/140‑1 (MQ=255)
gcgcGGGATATTTCCGACAAACTGCTGGCGTCACTTAGTTAGATTATTCTCAACTGGTATCCCGACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACGTCCTTCATCTGCTGCa > 3:35075/1‑140 (MQ=255)
gcgcGGGATATTTCATACAAACAGCTGGCCTCACATACTTCGATTCTTCTCTAATGGTATCACTACAGCCACAACCGCGACACCATCCAGCCGGAAAATGATGAAGACTCAATCGGCGGTAACATCCTGCAActgcatcc > 8:638514/1‑136 (MQ=255)
gcgcGGGATATTGCCGACAAACTGCTATCGTCACTTAGTTCGATTCTTCTCTACTTGTAACACAACAGCCACAACGGCGAACGCATCAAGCCGGAAACTGAAGACGACTCTATCGCCGGTCACTTCCTGCATcagattaa > 3:323126/1‑133 (MQ=255)
gcgGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCCCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTTCATCTGCTGCa > 5:225913/1‑138 (MQ=255)
gcgGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTATTCTCAACTGGTATAACTACAGCCACAACGGCGAACGCATCCAGCCGGCAACTGATGACGACTCTATCGGCGGTCACTTCATGCATCTGCTTCa > 5:809221/1‑138 (MQ=255)
tGCCGACAACCTGCGGGCGCCACTTCGTGCTATGCTTCACTACTGGTAGCAATACCCCCAAACCGGCGACCGCACCCCGCCGTAAACTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGaaaa < 6:1046002/138‑1 (MQ=255)
tGCCGACAAAATGGTGGGGTCACTTTGTTCGATTCTTATCTACTGGTATCACTACAGCCACACCGGCGACCGCATCCAGCCGGAAACTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGc < 2:693031/140‑1 (MQ=255)
ccGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGCCGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGCAAAGCCg > 4:1013984/1‑140 (MQ=255)
ccGACAAACTGCTGGCGTCACTTAGGTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCCGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCg > 4:650009/1‑140 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 3:475151/1‑140 (MQ=255)
aCAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCg > 2:572659/1‑140 (MQ=255)
ctgtgggCGTCACTTAGTTCTATTCTTATCTACTGGTATCACTACAGCCACACCGGCGAACGCATCCCGCCGGAACCTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAg < 8:139367/135‑1 (MQ=255)
ctgcggGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACAACACCCACACCGGCGAACGCACCCCGCCGGAAACTGAGCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAg < 2:73783/140‑1 (MQ=255)
ctgGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGCCTCTATCGGCGGTCACTTCCTGCATCTGCTGCCCGGCGAAAAGCCGTCGCAACGCTg > 2:166994/1‑140 (MQ=255)
cGTCCCTTAGTTCTATGATTATATTCTGGTATCACAACACCCACACCGGCTAACGCATCCAGCCTTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGaa < 3:730847/140‑1 (MQ=255)
agttAGTTCGATTCTTCTCTACTGGTTTAACTACAGCACCAACGGCGAACGCTTCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg < 4:839592/138‑1 (MQ=255)
aatttgTTCTATTCTTCTCTACTGGTATCACTACCGCAACACCGGCTACCGCATCCCGCCTTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg < 8:49734/135‑1 (MQ=255)
aCTTAGTTCGATTCATCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCATCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg > 8:75903/1‑140 (MQ=255)
aCTTAGGTGTATTTTTCGATACTGTTATCACAACAGCCCCAACCGGGAACGCAGGCAGCCGGAAACTGTTGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAgg < 4:630339/140‑1 (MQ=255)
tatgTTCGATTCTTCTCTAGTGGTATCACAACAGCCACACCGGCGACCGCACCCCCCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCg < 1:442993/137‑1 (MQ=255)
tttCTATTCTTCTATCCTGGTATCACTACAGCCACAACGGCTAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATg < 3:637437/139‑1 (MQ=255)
tttCGATTCTTCTCAACTGCTAACACAACACCCACAACGGCGAACGCATCCAGCCGGAAACTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATg < 7:74196/139‑1 (MQ=255)
ttCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGCACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGc > 2:175784/1‑140 (MQ=255)
tctaTTCTTCTCTACTGGTATCACTACCGCCACAACGGCTAACGCAGCCAGCCGGAAACTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCa < 2:1011971/137‑1 (MQ=255)
tttcttcTCTCCTGTTAAAACAACACCCACACCGGCCACCGCAACCCGCCGAAAAGTGACGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCat < 5:231406/137‑1 (MQ=255)
aTTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat < 4:497559/140‑1 (MQ=255)
aTTCTTCTCTACTGGTATAACTACACCCACACCGGCGAACGCAACCAGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat < 2:797474/140‑1 (MQ=255)
ttgggctctCCTGGAATCACACCACCCCAAACGGCCACCCCAGCCAGCCGGAAACTGATGACGACTCTATCGGCGGGCACTTCCTGCATCTGCAGCACGGCGAAAAGCCGTCGCAAAGCTGGGAACAGGCGATGCata < 5:636582/133‑1 (MQ=255)
ttcttcTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATAtc > 3:753174/1‑140 (MQ=255)
tcttctCTGCTGGTAACAATACCGCCACACCGGCCACCGCATCCAGCCGGAAAAGTCTGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATAtct < 7:437286/140‑1 (MQ=255)
tcttctATACTGTTATCACAACCCCCAACACGGCCAACGATTCCAGCCGTAAACTGATGACGACTCTATAGCCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCatat < 5:693041/138‑1 (MQ=255)
tctcTACTGGTATCACTACAGCCACACCGGCGAACGCACCCCGCCGTAAAGTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGc < 3:1026915/140‑1 (MQ=255)
tctcTACTGGTATCACAAAAGCCAAACCGGCTAACGCAACCAGCCGGAACCTTATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTTCACGGCTAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGc < 8:962993/140‑1 (MQ=255)
tctcTACTGGCATCTCAACAGCCACACCGGCGACCCCACCCACCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATAtctc < 6:213152/138‑1 (MQ=255)
tctaTACTGTTATCAATACACCCACAACGGCTAACGCACCCACCGGTAAACTGAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGc < 1:858215/140‑1 (MQ=255)
gctctACTTGTATCACTACACACAAAACGGCTAACGACTCCTGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGc < 8:436908/139‑1 (MQ=255)
tctACTGTTATCACTACAGCCACAACGGCGAACCCAGCCACCCGTAAACTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTg < 3:893846/140‑1 (MQ=255)
tctACTGGTTGCACAACAGCCAAAACGGCTAACCCACCCAGCGGTAACCTTAGGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTg < 8:210245/140‑1 (MQ=255)
tatACTGTTATCACTACCGCCACAAGGGCTAACGCAGCCAGCCGTAAACTGTTGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAATGCTGGGAAAAGGCGATGCATATCTCGc < 6:1057176/136‑1 (MQ=255)
ctACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCt > 5:313464/1‑138 (MQ=255)
atACTGGTATCAATACAGCCACAACGGCGAACGCATCCAGCGGGAAACTGAGCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTgg < 8:435057/139‑1 (MQ=255)
cTGGTATCACTACCGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGATAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGc > 1:1126768/1‑140 (MQ=255)
tGGTATCACTACCGACACAAGCTCTAACCCATCCCCCCGTACACTTATGACGCCTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTg < 6:821676/138‑1 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 3:554407/1‑140 (MQ=255)
gTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGt > 8:567760/1‑140 (MQ=255)
aTCACTACAGCCACAACGGCGCACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTAc > 4:157950/1‑140 (MQ=255)
aTCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCTTATCTCGCTGGTGCTGTAc > 4:776165/1‑140 (MQ=255)
taaCTACAGACACAAGCGCTAACTCATCCACCCGTAAATTCAGCACGACTCTATCGGCGGTCACTTCCTGCAGCTGCTGCACGGCGAAAAGACGTCGCAAAGCTGGGATAAGGCGATGAATATCTCGCTGGTGCGGTACg < 4:312904/138‑1 (MQ=255)
tCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCAGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTa > 5:529963/1‑138 (MQ=255)
ccACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACg < 2:381424/139‑1 (MQ=255)
acACTACCCCCCCAACGGCGAACGCATCCACCCTCAAACTGATCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTa < 6:358347/137‑1 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACg > 6:190671/1‑138 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 3:9344/1‑140 (MQ=255)
aCTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTCGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 1:11051/1‑140 (MQ=255)
tACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGcc > 6:906475/1‑138 (MQ=255)
tACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGa > 1:226005/1‑140 (MQ=255)
cgcaacaACGGCGAACGCATCCACCCGGAACCTGAGCACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGaa < 5:778887/134‑1 (MQ=255)
ccccACACCGCCTAACCCATCCCGCCGTAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAaca < 3:184295/138‑1 (MQ=255)
gCCACACCGCCGAACGCAGCCCGCGGTAACCTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAacac < 1:448115/140‑1 (MQ=255)
acaACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACg > 5:618100/1‑138 (MQ=255)
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ATGCGCACCGGCGTTTCCGCGCTCGGCTGCACGCTGCCAGAAAAAGAGGGGCACACCGTTTCTGGTGCGCGGGATATTGCCGACAAACTGCTGGCGTCACTTAGTTCGATTCTTCTCTACTGGTATCACTACAGCCACAACGGCGAACGCATCCAGCCGGAAACTGATGACGACTCTATCGGCGGTCACTTCCTGCATCTGCTGCACGGCGAAAAGCCGTCGCAAAGCTGGGAAAAGGCGATGCATATCTCGCTGGTGCTGTACGCCGAACACGAGTTT > NZ_CP022686/3925150‑3925428
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
