Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F13 I0 R1
|
150 |
9496.0 |
7621532 |
98.4% |
7499587 |
136.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,368,372 |
T→G |
13.7% |
S37R (AGC→CGC) |
ybiY ← |
glycyl‑radical enzyme activating protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,368,372 | 0 | T | G | 13.7%
| 258.2
/ 6.7
| 140 | S37R (AGC→CGC) | ybiY | glycyl‑radical enzyme activating protein |
| Reads supporting (aligned to +/- strand): ref base T (46/66); new base G (21/2); total (72/68) |
| Fisher's exact test for biased strand distribution p-value = 6.49e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 142 total aligned reads displayed.
TCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCATAGTTGCCTCTCTGTTTCGTTCAAACAT > NZ_CP022686/4368233‑4368507
|
tCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTAATACCGCAGCTACATCGTGCGGGCGCGGCt > 8:645588/1‑140 (MQ=255)
tCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATACAGCAGATGCTGCGTGCGGGCGCGGCt > 6:105773/1‑140 (MQ=255)
ggggTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTc < 4:501948/140‑1 (MQ=255)
ggTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCg < 8:524900/140‑1 (MQ=255)
cTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGTTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCt < 3:766272/140‑1 (MQ=255)
tCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAAACACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTACAGACAGAGTCGTGGGTGATACACCAGAACCTGCCTGACGGCGCGGCAGTGCGGGGTCTGaca > 5:465406/1‑140 (MQ=255)
aTAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTATTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCa < 7:416631/140‑1 (MQ=255)
aCCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTGATACAGCAGATACAGCGTGCGGGCGCGGCTTTGCGGGTTCTGACACCAGCGGCAGCCCAGcc > 3:142225/1‑139 (MQ=255)
cATTCAACGCGCGCTCAATCACTTCCTGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGTGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGaa < 2:559503/140‑1 (MQ=255)
cATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGaa < 8:231542/140‑1 (MQ=255)
cATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCCGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGaa < 1:178043/140‑1 (MQ=255)
aTTGAACGCGCGCTCAATCCCTTCCGGTGAGGTCTTAGCGCACAGCTTACAGCCTGCCAGACAGAGTCGGGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTGCTGACACCAGCGGCAGCCCAGCGAAc < 8:130550/140‑1 (MQ=255)
aTTCCACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAAc < 4:704376/140‑1 (MQ=255)
aTTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAAc < 1:272559/140‑1 (MQ=255)
ttCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTGATACATCCGAACCAGCGTGCGGGCGCGGCGTTACGGGGTCTGGCACCCGCGGCAGCCCCGCGCAcc > 3:848753/1‑139 (MQ=255)
aCGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCAAACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCt < 6:272495/140‑1 (MQ=255)
cgcgcTCAATCACTTCCGGTGCGGTATTATCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTa < 2:78618/140‑1 (MQ=255)
cgcgcTCAATCACTTCAGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGAGAACAGCCTTTa < 8:402798/140‑1 (MQ=255)
gcgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTGATACAGCAGATCCTGCGTGCGGGCGCCGCGTTGCGGGTGATGACACCACCGGCAGCCCACCCAACAGCCGTTaa > 7:833317/1‑140 (MQ=255)
cgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAg < 6:718678/140‑1 (MQ=255)
cgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGGATAACTGAGGTACTGCGTGCGGTCGCGGCGTTACGGGTTCGTCAACCAGCCGCAGCCCAGCCAACACCCGTTaat > 5:257337/1‑139 (MQ=255)
cgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGATTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAg < 6:520273/140‑1 (MQ=255)
aCTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGAc < 8:101345/140‑1 (MQ=255)
ggTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACCTAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCg < 1:899583/140‑1 (MQ=255)
ggTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTGAAAAACCAAATACAGCGTGAGGGCGCGGCTTTACGGGGTCTGACACCAGACGCCGCCCCGCGCACAGACATTAAGAAAAACACCCGTGCg > 8:400225/1‑140 (MQ=255)
ggTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCg < 1:950617/140‑1 (MQ=255)
ggTGCGGTCTTAGAGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGTGCATACAGCAGATCCGGCGTGCGGGCGAGGCTTTCCGGGTGCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCg < 8:518998/140‑1 (MQ=255)
tGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTGATACATCAGATCCTGCGTGCGGGCGCGGCGTTGCGGGTTCTGCCCCCAGCGGCAGCCCCGCGCACCGCCGTTAAGAAAAAAGACCGTggggc > 1:781017/1‑139 (MQ=255)
cGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCCTTAAGCAGATCCGGCGGGCGGGCGCGGCTTTACCGGTTCTGGCACCAGCGGGCACCCAGCGAACAGCCATTAACAAATACGACCCTGCCGATa > 6:702371/1‑140 (MQ=255)
ggTCTTAGCGCACAGCTTACAGCCTTCCAGAGAGAGTGGTGGGTCTTACAGCAGATCCTGCGTGCGGGCGCGGGTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCTTACAGCATTTAAGAAATACGACCGTGCGGATAc < 6:748599/140‑1 (MQ=255)
ggTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCGTGAGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAATTACGACCGTGATGATag < 8:403579/140‑2 (MQ=255)
ggTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATAACGCAGATACTTCGTGCGGGCGCGGGGTTCCGGGTTGTGACCCCAGCGGCAGCCCAGCGACCAGCCTTTAAGAAATAAGACCGTTCGGATAc > 5:791495/1‑140 (MQ=255)
gTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATAAAGCAGATCCAGCGTGCGGGCCCGGCGTTCCGGGTTGTGACACCCGCCGCAGACCAGCGCACAGCCTTTAAGAAATAAGACCGTGCggtttcc > 2:300210/1‑135 (MQ=255)
tCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCg < 3:270457/140‑1 (MQ=255)
tAGCGCACAGCTTACTGCCTTCCACTCCGAGTCGTGGGTGAAACATCAGCTCCTGGGTGCGGGCGCGGCTTTCCGGGGTCTGACACCAGGGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCgggg < 5:141767/140‑1 (MQ=255)
tAGCGCACAGCTTACAGCCTTACAGACAGAGTCGTGGGTAATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCgggg < 5:527818/140‑1 (MQ=255)
cgcgcAAAGCTTACAGCATTCCAGACATAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGTTTCTGACACCAGCGGCAGCCCAGAGAACAGCCTTTAAGAATTACGACCGTGCGGATACCGGGGc < 5:741702/139‑1 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGTGATACAGCAGATACAGCGTGCGGGCGCGGCATTAAGGGTTCTGACACCCGCGGCAGCCCAGCGAACAGCCTTTAATAAATACGCCCGTGCGGCTACCGGGGCcatcat > 4:247812/1‑140 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCAGCGTGCGGGCGCGGCGTTGCGGGGTCTGGCACCAGCGGCAGCCCAGCGCACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGGcatcag > 1:595163/1‑139 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCAGCGGGCGGGCGCGGGGGTGCGGGTTATGGAACCCGCGGCCGCCCCGCGCACCGCCATTTAGAAAAACGACCCGGCGGATAACGGGGCcagcct > 6:495661/1‑136 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATACTGCGTGCGGGCGCCGCATTCCGGGGTATGCCACCCGCGCCCGCCCCGCGACCAGCCTGTAAGAAATACGCCCGTGCGGATTCCGGGGCaatcat > 8:136639/1‑140 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTGCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCcatcat < 6:48748/140‑1 (MQ=255)
gCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGAAGATCCAGCGTGCGGGCGCGGCTTTACCGGTTATGCCAACAACGGCCGCCCAGCGCACAACCTTTAAGAAATAAGAACCGGCGGATAACCGGGCCCACATgg > 6:527818/1‑140 (MQ=255)
cTTACCGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCGGCGGGCGGGCGCGGCTTTCCGGGTGCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATggg < 7:642467/140‑1 (MQ=255)
cTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATggg < 2:772976/140‑1 (MQ=255)
cgCCTTCCAGACAGAGTCGGGGGTCATACAGCAGATCCTTCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAg < 2:745108/139‑1 (MQ=255)
cgCCTTCCACACAGAGTCGGGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTGCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAg < 5:847741/139‑1 (MQ=255)
aGCCTTCCAGACATCGTCGTGGTTCATACAGCAGATCATGCGTGCGGGCGGGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAg < 6:58691/140‑1 (MQ=255)
ccTTCCAGACAGAGTCGTGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACTACCGTGCGGATACCGGGGCCATCATGGGGCGAGTa < 2:234148/140‑1 (MQ=255)
tCCAGACAGAGTCGTGGGTGATACAGCAGATACTGCGTGCGGGCGCGGCGTTACGGGTTCTGACACCCTCGGCAGCCCCCCGCACAGCCGTTAAGAAATAAGACCGGGCGGATACCGGGGCCAGCTTGGGTCGAggatcg > 4:334186/1‑135 (MQ=255)
tCCAGACAGAGTCGTGGGTCATACAGCAGCTACTGCGTGCGGGCGCGGCGTTCCGGGGTCTGACACCAGCGGCACCCCCGCGAACAGCCTTTAAGAAATACCACCGTGCGGATTCCCGGGCCCTAATGGGGCGAGTAggg > 4:41541/1‑138 (MQ=255)
tCCAGACAGAGTCGTGGGTCATACAGCAGATACTGCGTGCGGGCGCGGGTTTACGGGTTCTGACCCCAGCGGCAGCCCCGCGCACAGCCGTTAAGAAATACGACCGTGCGGATAACGGGGCCATCATGGGTCGGGTAGCg > 4:553190/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGTCATACAGCAGATACTGCGTGCGGGCGCGGCTTTACGGGTTGTTACACCAGCGGCAGCCCAGCGAACCGCCGTTAAGCAATACGCCCCTGGGGCTACCGGGGCCAGCATGGGTCGCGTAGCg > 2:948755/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGTCATACAGCAGATACAGAGTGCGGGCGCGGGTTTACGGGTTGTGAACCCAGACGCAGCCCACCGCACAGCCTATAAGAAATACGACCGTGCGGAGACAGGGGCCCACATGGGGCGAggatcg > 6:474465/1‑135 (MQ=255)
tCCAGACAGAGTCGTGGGTCATACAGCACATACAGCGTGCGGGCGCGGCTTTCCGGGTGATGACACCCGCGGCAGCCCACCGAACAGCCTTTAATAAATAAGACCGTGCGGATACCGGGGCCAACATGGGTAGAGTAggg > 7:683372/1‑138 (MQ=255)
tCCAGACAGAGTCGTGGGTCATAAAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGGTCTGACCCCCGCGGCAGCCCAGCGCACAGCCATTAAGAAATACGACCGTGTGGATACCGGGGCCCTCATGGGTCGCGTTGCg > 4:106314/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGTCAAACAGCAGCTCCTGCGTTCGGGCGCGGCGTTAACGGGTCTGACCCCACCGGCCGACCAGCGAACATGCATTAAGAAAAAACACCGTGCGGGTAACGGGGCCAACAGGGGGCGAGTATCg > 2:365113/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGGCATTCAGCAGATCCTGCGTGCGGGCGCGGCGTTCCGGGTTCTGACACCAGCGGCCGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCCGGGCCATCATGGGTCGAGTAGCg > 8:448094/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGGTTTCCGGGGTCTGACACCAGCGGCAGCCCCGCGAACAGCCATTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCg > 2:957569/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGGCATACAGCAGATACTGGGTGCGGGCGCGGCGTTCCGGGGTATGCCCCCAGCGGCAGCCCCGCGAACAGCCGTTAAGAAATAAGACCGTGCGGATACCGGGGGCATCAATGGGGGAGTAGCg > 2:263614/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGGCATACAGCAGAACCTTCGTGCGGGCGCGGCTTTACGGGTGGTGACACCCGCGGCCGCCCAGCGAACAGCCGGTAAGAAAAAAGACCGGGCGGCTACCCGGGCCAGCATGGGTCGAGGAGCg > 2:388933/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGGCAAAACGCCGATACAGCGTGCGGGCGCGGCGTTCAGGGTTCGGCCACCCGCCGCAGCCCAGCGCCCAGCCGGTAACAAATACCACCGTGCGGATACCGGGGCCATGAAGGGTAGAGTAGCg > 6:140819/1‑140 (MQ=255)
agagTCGTGGGTGATACAGCAGATCCTGCGTGCGGGCGCGGCTTTACGGGTGGTGTCACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATAAGACCGTGCGGTTAACGGGTCCAGAAAGGGGCGGGTTGCGTTTAatt > 2:582480/1‑139 (MQ=255)
agTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATAtt < 6:791495/140‑1 (MQ=255)
agTCGTGGGTCATAAAGCAGATACTGCGTGCGGGCGCGGCTTTCCGGGTTCGGATACCAGCGGCAGCCCACCGATCAGCCTTTAAGAAAAACGCACGTGCGGGTACCGGGGGCATAAAGGGTGGTGTTGCGGTTAATAtt > 4:158638/1‑140 (MQ=255)
tCGTGGGTCATACAGCAGATCCAGCGTGCGGGCGCGGCTTTACGGGTTATGACCCCCGCGGCCGCCCAGCGAACAGCCATTAAGAAATACGACCGGGCGGATACCGGGGGCATCATGGGTCGAGTAGCGTTTAATAttta > 4:217862/1‑138 (MQ=255)
tCGTGGGTCAAAAAGCAGATCCTGCGTGCGGGCGCGGCGTTCAGCGTTATGACACCCCCGGGCGCCCCTCGAACCACCTTTAAAAAATAACACCGTGCGGCTACCCGGGCCATCATGGGGCCAGTAGCGTTTAATAttta > 4:419869/1‑138 (MQ=255)
tGGGTCATACAGCAGATCCTTCGTGCGGGCGCGGCGTTCCGGGTTCTGACACCCGCGGCAGCCCAGCGAACAGCCATTAAGAAATAAGACCGTGCGGGTACCGGGGCCATAAGGGGGCGAGTAGCGTTGAATATTTaaaa > 2:264710/1‑140 (MQ=255)
gggTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGGTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAAt < 2:43128/140‑1 (MQ=255)
ggTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCTGCGGCAGCCAAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATc < 4:967772/140‑1 (MQ=255)
cATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGc < 7:822646/102‑1 (MQ=255)
cATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAAAAGCCATTAAGAAATAAGACACTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAAAATTTAAAAACaaa > 3:611647/1‑138 (MQ=255)
aTACAGCCGATCCTGCGTGCGGGCGCGGCTTTCCGGGTGCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCATAg < 5:549982/140‑1 (MQ=255)
tACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTa > 2:377108/1‑72 (MQ=255)
tACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTa < 1:377108/72‑1 (MQ=255)
tACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTa < 1:372253/72‑1 (MQ=255)
tACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAATAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCATAGt > 6:378316/1‑140 (MQ=255)
tACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCATAGt > 6:198255/1‑140 (MQ=255)
tACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCATAGt > 3:148130/1‑140 (MQ=255)
cagcagATCCTGCGTGCGGGCGCGGCTTTCCTGGTTCTGACACCAGCTGCAGCCCAGCGAACAGCCTTTAATAAATACGACCGTGCGTATACCTGGGCAATCATGGGTCGAGTAGCGTTGAATATTGAAAATCATAGTTg < 8:775918/140‑1 (MQ=255)
cagcagATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCATAGTTg < 7:636333/140‑1 (MQ=255)
cagcagATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCATAGTTg < 1:837665/140‑1 (MQ=255)
cagcagATCATGGGGGCGGGCGCGGCTTTCCGGGATCTGACACCAGCGGCAGCCCAGCGAACACCCTTTATGAAATACGACCGTGCGGATACCGGGGCCATCAAGGGGCGAGGAGCGTTGAATATTGAAAATCATAGTTg < 5:96388/140‑1 (MQ=255)
agcagATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCATAGTTGc < 5:922160/140‑1 (MQ=255)
cagATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGAc < 6:878942/78‑1 (MQ=255)
cagATCCTGCGTGCGGGCCCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAAAAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGACATCATGCGTCGAGTATCGTTGAATATTGAAAATCATAGTTTccg > 1:97370/1‑139 (MQ=255)
gATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCCGCGGCCGCCCAGCGAACAGCCTTTAAGAAATACGCCCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCTGTGAATATTGCAAATCATAGTTGCctcg > 1:483338/1‑139 (MQ=255)
aTCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCATAGTTGCctctc > 8:624203/1‑140 (MQ=255)
aTCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCATAGTTGCctctc > 2:654128/1‑140 (MQ=255)
aTCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCGTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCATAGTTGCctctc > 8:796456/1‑140 (MQ=255)
tgcgtgcgGGCGCGGCTTTCAGGGTTCTGACACCAGCGGCAGCACAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGAACTCATTGGTCGAGTAGCGTTGAATATTGAAAATCATATATGCCTCTCTGtt > 4:863420/1‑140 (MQ=255)
gtgcgGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATTCCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCATAGTTGCCTCTCTGGTTCg > 4:99338/1‑140 (MQ=255)
gtgcgGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAATATCATAGTTGCCTCTCTGTTTCg > 3:425282/1‑140 (MQ=255)
gtgcgGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCATAGTTGACTCTCTGTTTCg > 3:644658/1‑140 (MQ=255)
gggggaggCTTTCCGGTTTCTGACATCCGGGGCAGGCCATCTAACAGCCTTTAAGAAATACGACCGTGAGTATACCTGTGGCATCATGGGTCGAGTAGCGTTGAATATTCAAAATCTTAGTTGCCTCTCTGTTTCGTTCa < 1:312516/134‑1 (MQ=255)
gggCGCGGCTTTCCGGGTGCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCATAGTTGCCTCTCTGTTTCGTTCa < 7:367717/140‑1 (MQ=255)
gggCGCGGCGTTGAGTGTTCTTCCACCAGCGTCAGCCCAGAGAACATCATTTAATAAATACGACCGTGCGGATACCGGTGCCATCATGGGGCGAGTAGCGTTGAATATTGAAAATCATATTTGCCTCTCTGTTTCGTTCa < 7:147490/140‑1 (MQ=255)
ggCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCATAGTTGCCTCTCTGTTTCGTTCaa > 2:693006/1‑140 (MQ=255)
cgcgGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCTAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGTGCCAACAAGGGTCGAGTAGCGTTGAAAATTGAAAATCATAGTTGCCTCTAAGTTTCTGTCaaaa > 4:422851/1‑139 (MQ=255)
cgGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGCAATACGACCTTGCGGATACCGGGGCCATCATGGGTCGAGAAGCGTTGAATATTGAAAATCATAGTTGCCTCTCTGTTTCGTTCAAACAt < 3:440356/140‑1 (MQ=255)
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TCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCATAGTTGCCTCTCTGTTTCGTTCAAACAT > NZ_CP022686/4368233‑4368507
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
