Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F13 I0 R1
|
230 |
5035.0 |
9125430 |
98.4% |
8979423 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,412,284 |
A→C |
10.4% |
W241G (TGG→GGG) |
ybjT ← |
SDR family oxidoreductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,412,284 | 0 | A | C | 10.4%
| 401.9
/ 2.1
| 203 | W241G (TGG→GGG) | ybjT | SDR family oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base A (113/57); new base C (2/24); total (115/88) |
| Fisher's exact test for biased strand distribution p-value = 9.06e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 205 total aligned reads displayed.
AAAGCGATCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGGATGATCTAA > NZ_CP022686/4412145‑4412422
|
aaGCGATCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCTGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAg < 3:674120/140‑1 (MQ=255)
cGATCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCGGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGc < 7:758524/138‑1 (MQ=255)
agcAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCgg < 8:931416/136‑1 (MQ=255)
aTCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGt > 1:5298/1‑140 (MQ=255)
aTCAGCCGTTGTGGCATGAGAGCAAGTAGCGCGGTGTCATCAGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTTGGCGGTACTGAACTAATCACATTAAGAAACCACACCGAAATCCAGCgggg > 1:843773/1‑139 (MQ=255)
tCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTg > 6:350301/1‑140 (MQ=255)
aGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTggg < 2:337241/140‑1 (MQ=255)
ccGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGa < 2:222935/140‑1 (MQ=255)
gtgGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCAAATTAAGAAACCACCCCGAAATCCAGCGGGTgggtcggg > 7:259193/1‑133 (MQ=255)
ggATGCGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATg > 6:901694/1‑140 (MQ=255)
aTGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATggg > 6:910844/1‑140 (MQ=255)
aGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAg > 2:70391/1‑140 (MQ=255)
aGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAg > 3:562205/1‑140 (MQ=255)
aGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAg > 1:911183/1‑140 (MQ=255)
aGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAg > 1:280860/1‑140 (MQ=255)
cACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTGCCGCCCCTGAATCCCCGCCCTGGCGGTGGTGGGCGGGACTGCAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCa > 7:1034923/1‑138 (MQ=255)
ttAGAGCGGTTACATCCGCAAGCCTATCGTGTTTAAGCCACTTAATCAACCCCCTGGCGGTGGTGGGCGTAACTTAAGTAATCACATTAACAAACCACCCCTAAATCCTGGGGTGGGGGAGGGGGATGGGGAGCAAcc < 8:127568/137‑1 (MQ=255)
cgcggGGTGTCATCCGCCAGCTGATCGTGTTGCAGCCCCTGAATCACCGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAACCCAGCGGGGGGGGAGGGGGATGGGGAGCAACCAgcg < 5:366048/139‑1 (MQ=255)
gtgcgGTGTCATCCTCAAGCAGCTCGTGGTTAAGCACCTGATTCACCGCCGTGGCGGTGTGGGGCTGTACTTAAGTACTCACATTAAGAAACCACACCGAAATCCAGCGGGGGGGGAGGGGGATGGGGAGCAACCAgcgg < 5:887309/138‑1 (MQ=255)
ggcgGTGTCATCCGCCTCCATATGTTGTTTCAGCCCCTTATACAACGCCGTGGTGGTGGTGGGCGTTACTGATGTAATAACATTAAGAAACCACACCGAAATCCAGCGGGTGGGTAGGGGGATGGGGAGCAACCAgcggc < 2:407770/139‑1 (MQ=255)
cgcgGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTTAATCAACGCCCGGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAACAAACCACACCGAAATCCAGCGGGGGGGGAGGGGTATGGGGAGCAACCAgcggc < 3:286995/140‑1 (MQ=255)
ggTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCACCCAgcggcg > 7:221357/1‑138 (MQ=255)
ggTGACATCCGACAGCAGATCGTGTTTCCGCCCCTTCTCAAACGCCCTGGCGGTGGGGGGCGGTACTTAATAAATCACATTAACAAACCCCACCGAAATCCAGCGGGGGGGGAGGGGGATGGGGAGCAACCAGCGGCGCt < 3:461494/140‑1 (MQ=255)
gtgtCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGAGGGGGAGCAACCAGCGGCGCtt > 2:803067/1‑140 (MQ=255)
tgtCATCCGCCAGCAGATCGTGTTTCAGCCCATGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAATTAATCACATAAAGAAACCACCCCGAAATCCACCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCt < 8:787400/138‑1 (MQ=255)
cATCCGCCAGCAGAGCGTGTTTCAGCCCCTGAATCAACGCCCTGTCGGTGGTGGGCGGTACTGAAGTAATCAGATTTAGAAACCACCACGAAATCCAGCGGGTGGGTAGGTGGAGTGGGTGCAACCAGCGGCGCTTAc > 8:62474/1‑138 (MQ=255)
tCCGCCCGCAGATCGTGTTTCAGCCCCTTAATCAACGCCCTGGCGGGGGTGGGCGGTACTGAAGAAATCACATTAAGAAACCACCCCGAAATCCCGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCt < 6:337236/140‑1 (MQ=255)
tCCGCCAGCAGATCGTGTTTCCGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGcg > 5:52094/1‑139 (MQ=255)
ccGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGc > 7:893392/1‑138 (MQ=255)
cccccccagATCGTGTTTCAGCCCCCGAATCACCGCCCTGGCGGTGGGGGGCGGTACTGAAGAAATCACATAAACAAACCACACCGAAACCCACCGGGGGGGGAGGGGGAGGGGGAGCAACCAGCGGCGCTTACCGCt < 7:822526/132‑1 (MQ=255)
gCCTGCAGAGCGTGTTGCAGCCCCTGAAGAAACGCCCGGGCGGTGGTGGGCGGTACTGAAGTAATCCCATTAAGAACCCACACCCAAATCCAGCGGGTGGGGTGGGGGAGGGGGAGCAACCAGCGGCGCTTACCGCTCAc < 3:1096694/140‑1 (MQ=255)
cagcagATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCg > 4:130164/1‑140 (MQ=255)
cagcagATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCg > 1:335773/1‑140 (MQ=255)
cccTTAATCACCGCCTTGGGGGTGGTGGGCGGTACTGAAGTAAACACATTAAGAAACCACACCGAAAACCCGCGGGTGGGGAGGGGGAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAAc < 8:348063/138‑1 (MQ=255)
cccTTAACCATCGCCCTGGGGGTGGTGGGCGTTACTTAATTAATCACATTATGAAACCACACCTAAACCCCGCGGGGGGGGTGGGGGAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTg < 5:909046/140‑1 (MQ=255)
cTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAg > 2:1083650/1‑70 (MQ=255)
gAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGc > 5:591633/1‑140 (MQ=255)
attCAACGCCCTGGCGGGGGTGGGTGGTACTTAATTAATCACTTAAATAAACCACACCGAAATCCAGCGGGGGGGGTGGGGTAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCt < 6:460885/138‑1 (MQ=255)
tccccGCCCTGGGGGTGGTGGGCGGTACTGAAGTAATCACATTACGAAACCACACCGAAATCCAGCGGGGGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGa < 5:694465/136‑1 (MQ=255)
gtGGGGGTGGTGGGCGGTACTGAAGTAATAACATAAAGAAACCACACCCAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAg < 5:479599/139‑1 (MQ=255)
gggggggtgggGGGAGGTACTCAATTAAAAACTTTAAGATACCACTCCGAATACCGGCGGGGGGGGTGGGGGTTGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAATATGTTCAAACTGTTGCTGATAACTGAg < 3:514046/135‑1 (MQ=255)
cgggCGGGGGGGGGCTGTAATGAAGTAATCACATTAAGAAACCCCACCTAAATCCCGGGGGGGGGGTGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAg < 3:782412/138‑1 (MQ=255)
cTGGCGGTGGTGGGGGGTACTGAAGTAATCACATTAACAACCCACACCGAAAGCCACCGGGGGGGGAGGGGTAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAg < 5:259949/140‑1 (MQ=255)
cTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAg < 3:193256/140‑1 (MQ=255)
cTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAg < 5:314838/140‑1 (MQ=255)
gtggGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTgg > 2:667471/1‑140 (MQ=255)
gggCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTgg > 7:581154/1‑138 (MQ=255)
gCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCcg > 4:339212/1‑140 (MQ=255)
tACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAgc > 1:1067620/1‑71 (MQ=255)
tACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAgc < 2:1067620/71‑1 (MQ=255)
cTGAAGTAATCACATTAAGAAACCACACCGAAATCGAGCGGGTGGGGAGGGGGATGGGGAGCACCCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCACACTGTTGCTGATAACTGAGCAGTTCTGGTCcggcgg > 7:176800/1‑138 (MQ=255)
cTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCACCCAGCGGCGCTTACCGATCACCGCCATAAAATGATCAATCTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCt > 4:910191/1‑140 (MQ=255)
cTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCaggcgg > 8:377397/1‑138 (MQ=255)
ttaaGTAACAAAATTACGAAACCAAACATACATCCTGCGGGGGGGGAGGGGGATGGGGAGCAACCAGCGGCGCGTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCtt < 3:843421/138‑1 (MQ=255)
tGAAGTAATCACATTAATAACCCACACCGAATTCCCGCGGGTGGGTAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCtt < 1:612064/140‑1 (MQ=255)
aaGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGATGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCg > 6:131811/1‑140 (MQ=255)
aTCACATTAAGAAACCACTCCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 6:1080622/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCt < 3:886585/103‑1 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTGGAAGAt > 4:1158911/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAatat > 1:965809/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAgct > 1:382369/1‑138 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAgct > 4:1023928/1‑138 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 1:147327/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 1:1138530/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 1:817682/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 3:397568/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 2:934572/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 6:660847/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 6:699096/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTAAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGATTCGAAGAt > 5:342248/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACAGCCATAAAATGTTCAAACGGTTGCTGATAACTGAGCACTTCTGGTCAGGCGGCTTCGAAGAt > 6:72801/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGGGGGGAGGGGTATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATACCTGACCACTTCTGGTCCGGCGGCTTCgatgat > 1:296908/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAAACCAGCGGGTGGGGAGGGGGATGCGGAGCAACCAGCGGCGCTAACCGCTCACCTCCATAAAAAGTTCAAACAGATGCTGATAACTGAGCACTTCTGATCCGGCGGCTTCGAAGAt > 4:830087/1‑140 (MQ=255)
aTCACATTAAGAAACCACACAGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTTCTGATAACTGAGCACATCTGGTCCGCCGGATTCGAAGAt > 5:273684/1‑140 (MQ=255)
tCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATg < 6:872854/140‑1 (MQ=255)
gaaaaTTACGAAACCACCCCGAAATCCTGCGGGGGGGGAGGGGTAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATCACTGAGCACTTCTGGTCCGGCGGCTTCGAAGa < 8:192228/134‑1 (MQ=255)
cacaTTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCATCGGCGCTTCCCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGAACTTCTGGTCCGGCGGCTTCGAAGAt > 8:895443/1‑138 (MQ=255)
cacaTTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 8:415613/1‑138 (MQ=255)
cacaTTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 7:929308/1‑138 (MQ=255)
cacaTTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 7:392931/1‑138 (MQ=255)
aTTAAGAAACCACACCGAAATCCAGCGGTTGGGGAGGGGGATGGGGAGCAACCAGCGGCGATTACCGCACACCGCCATAAAATGTTCAAACTGTTGCTTATAACTGAGCACTTCTGGACCGGCGGCGGCGAAGATGCGgt > 4:463178/1‑140 (MQ=255)
aTTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCg > 8:551469/1‑138 (MQ=255)
aTTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGAAACCAGCGCCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCAATTCTGGTCCGGCGTCTTCGAAGATGCCgt > 4:760055/1‑140 (MQ=255)
aaGAAACCACACCGAAATCCCGCGGGTGTGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACAGCCATAAAATGTTCAAACTGTTGCTGAGAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGttgtg > 6:168346/1‑139 (MQ=255)
accaccCCGAAATCCCGCGGGTGGGGTGGGGGAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAg < 2:911183/140‑1 (MQ=255)
cacaCCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGTCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGc > 1:220499/1‑140 (MQ=255)
cacaCCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGc > 1:1004579/1‑140 (MQ=255)
cacaCCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGc > 2:331714/1‑140 (MQ=255)
cacaCCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGc > 6:1050273/1‑140 (MQ=255)
cacaCCGAAATCCAGCGGGGGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCcgg < 6:298093/112‑1 (MQ=255)
cacCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGc > 7:372908/1‑138 (MQ=255)
cacCGAAATCCAGCGGATGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGc > 8:720049/1‑138 (MQ=255)
cacCCAAAACCAGCGGGGGGTGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCg < 5:1043866/140‑1 (MQ=255)
ccGAAATCCCGGGGGGGGGGTGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCg < 8:463564/138‑1 (MQ=255)
ccGAAATCCCGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGga < 1:428568/140‑1 (MQ=255)
ccGAAATCCAGCGGGTGGGGAGGGGGATGGTGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGga < 4:614047/140‑1 (MQ=255)
ccGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGga < 2:206178/140‑1 (MQ=255)
ccGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGga < 3:339212/140‑1 (MQ=255)
ccGAAATCCAGCGGGGGGGGCGGGGGCTGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGga < 4:652719/140‑1 (MQ=255)
ccGAAATCCAGCGGATGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCg < 7:720049/138‑1 (MQ=255)
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AAAGCGATCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGGATGATCTAA > NZ_CP022686/4412145‑4412422
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
