Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F2 I0 R1
|
233 |
6461.8 |
9239822 |
98.3% |
9082745 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,412,284 |
A→C |
10.5% |
W241G (TGG→GGG) |
ybjT ← |
SDR family oxidoreductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,412,284 | 0 | A | C | 10.5%
| 348.1
/ 3.6
| 187 | W241G (TGG→GGG) | ybjT | SDR family oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base A (102/58); new base C (3/23); total (105/82) |
| Fisher's exact test for biased strand distribution p-value = 5.50e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 188 total aligned reads displayed.
AAGCGATCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGGATGATCTAAC > NZ_CP022686/4412146‑4412423
|
aaGCGATCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAg < 1:260468/140‑1 (MQ=255)
cGATCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGc > 5:734805/1‑138 (MQ=255)
aTCAGCCGTTGTGGGATGAGCTCACGTAGCGCGGTGTCATCAGCCAGCAGATCGTGTTTCCGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAAACAAACCGAAATCCAGCgggg > 8:1052649/1‑139 (MQ=255)
tCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGACCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTg > 7:261301/1‑140 (MQ=255)
aGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAAGCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTg < 6:795555/138‑1 (MQ=255)
gTTGTGGGATGTGCGAACGTAGCGCGTTGTCTTCCTCCAGCAGATCGTGTTTCAGCCCCTTAATCAACGCCCTGGCGGTGGTGGGCGTTACTGAAGTAATACCATTAAGAAACCACACCGAAATCCCGCGGGGGGGGAgg < 2:108320/140‑1 (MQ=255)
ttGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAggg > 4:283723/1‑140 (MQ=255)
tgtgGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAgggg > 2:330660/1‑140 (MQ=255)
ggATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATg > 1:1020972/1‑140 (MQ=255)
aTGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATggg > 8:424467/1‑140 (MQ=255)
aTGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATggg > 2:172277/1‑140 (MQ=255)
gAGCGCAGGTTGGGGGGTGTCATCCGCCAGCAGTTCGTGTTGCCGCCCCTGAATCAACGCCCTGGGGGTGGGGGGCGGTACTTAAGTAATCACATTAAGAAACCACACCGAAATCCCGCGGGTGGGGTGGGGGATGGGGa < 4:1145819/140‑1 (MQ=255)
gAGCGCACGTTGCGGGGTGTCATCCGCCTGAAGCTCGTGTTTCAGCCCCTGATTCAACGCCCTGGCGGTGGTGGGCGGTATTGAAGAAATCACATTAACAAACCACACCGAAATCCAGCGGGTGGGGTGGGGTATGGGGa < 2:1110779/140‑1 (MQ=255)
aGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCGTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAAAAACCACACCGAAATCCAGAGGGTGGGGAGGGGGATggggcg > 4:336527/1‑138 (MQ=255)
aGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAg > 2:229029/1‑140 (MQ=255)
aGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAg > 2:772301/1‑140 (MQ=255)
cgcACGTAGCGCGTTTTCATCCGCAAGCAGTGCGTGTTTCCGCCCCTGAATCACCGCCCTGGGGGTGGTGGGCGGTACTGAATTAATCACATTAAGAACCCCCACCGAAATCCCGCGGGGGGGGAGGGGGATGGGGAGCa < 8:28302/140‑1 (MQ=255)
cgcACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCa > 1:468986/1‑140 (MQ=255)
cgcACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCACGAATCAACGCCCTGGCGGTGGTGGGCTGTACTGAAGTAATCACATTAAGAAACACCACCGAAATCCATCGGGTGGTGAGTGGTATggggcg > 6:1093123/1‑136 (MQ=255)
cGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCa > 3:1041362/1‑140 (MQ=255)
tAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGTGCGGTACTGAAGTAATCACATTAAGATACCACACCGAAATCCCGCGGGTGGGGAGGGGGATGGGGAGCAACCAgc > 7:638328/1‑140 (MQ=255)
tggggggTGTCAACCGCCAGCTGAGCGTGTTTCAGCCCCTTAATCAACGCCCTGGCGTTGGTGGGCGGTACTGAAGTAATCAAATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGTAGGGGGAGCAACCAgcg < 2:974556/135‑1 (MQ=255)
ggcgcGGTGTCAGCGGCCTGCTTCGCGTGTTCCCGCCCCTGAATCACCGCCCGGGCGGGGGTGGGCGTGACTTACTTAATCACATTAAGAAACCACCCCGAAATCCAGCGGGGGGGGAGGGGGATGGGGAGCAACCAgcg < 2:107846/139‑1 (MQ=255)
gcgcGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCCGCGGGTGGGGAGGGGGATGGGGAGCAACCAgcgg > 3:207708/1‑140 (MQ=255)
cgcgGTGTCATCCGCCAGCAGATCGTGTTTCCGCCCCTCAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCAAATTAACAACCCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAgcggc < 1:411791/140‑1 (MQ=255)
cgcgGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCCAAATCAAGCGGCAGGGGAGGGGGATGGGGAGCAACCAgcggc > 4:137637/1‑140 (MQ=255)
cgGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAgcggc > 5:825/1‑138 (MQ=255)
gtgtCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCtt > 2:383616/1‑140 (MQ=255)
tCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCg > 6:587358/1‑138 (MQ=255)
cGCCAGCAGATCTTGATTCAGCCCCTGAATCACCGCCCGGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGGGTGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCa < 2:252235/140‑1 (MQ=255)
cagcagATCGTGTTTCAGCCCCTGCATCAACGCCCTGGCGGTGGTGGGCGGTTCTGCAGTAATCACATTAAGTAACCACCCCGCAAGCACGCGGGGCGGGAGGGGGATGCGGAGCAACCAGCGGCGCTTCCCGCGCACCg > 4:78366/1‑140 (MQ=255)
cagcagATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCg > 7:439321/1‑140 (MQ=255)
cagcagATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGCTGGGCGGTACTGAAGTAATCACAATAAGAAACAACACCGAAATCCAGCGGGAGGGTAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCg > 3:745101/1‑140 (MQ=255)
gcagATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGcc > 2:406171/1‑140 (MQ=255)
aTCGTGTTTCAGCCCCTGATTCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAAGCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCCACCAGCGGCGCTTACCGCTCACCTCCATaa > 1:169318/1‑140 (MQ=255)
aTCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTACTAAACCACACCGAAAGACAGAGGGTGGGGAGGTGGATGGGGAGCCACCAGCGGCGAGTACCTCTCACCGCCATaa > 1:174779/1‑140 (MQ=255)
ttCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGACACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTc > 4:349557/1‑140 (MQ=255)
tCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAATTAATCCACTTAATAAACCACACCCAAATCCAGCGGGTGGGGATGGGGATGTGGAGCAACCAACGGCGCTTACCGCTCACCCCCAAAAAATGttac > 4:902252/1‑138 (MQ=255)
cgCCCCTTAATCAACGCCCTGGCGGTGGTGGGGGGTACTGAAGAAATCCCATTAACAACCCACCCCGAAATCCCGCGGGGGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCaaa < 8:828251/139‑1 (MQ=255)
aGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCCCCATAAAATGTTCaaa > 4:619100/1‑140 (MQ=255)
cccTGAATCAACGCCCGGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAAc < 5:530006/138‑1 (MQ=255)
ccTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGTGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGt > 1:209999/1‑140 (MQ=255)
tGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTg > 3:1118759/1‑140 (MQ=255)
tGAATCAACGCCCTGGAGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACAACACCGAAATCCAGCGGGAGGGGAGGTGGATGGGCAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGATCAAACTGTTg > 2:442530/1‑140 (MQ=255)
attCAACGCCCTGGGGGTGGTGGGCGGTACTGAATTAATCACATTAAGAAACCACCCCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCt < 2:4503/138‑1 (MQ=255)
aaTCACCGCCCTTGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCt < 3:945570/140‑1 (MQ=255)
aaTCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCAATAAAATGTTCAAACTGTTg > 5:679696/1‑138 (MQ=255)
ccGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGAt < 6:160732/137‑1 (MQ=255)
gtgggggtgggggTGGTTACTGATGAAATCACTTTATTAAACCACACCGAAATCCAGGGGGTGGGGTGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAg < 3:283723/139‑1 (MQ=255)
gtGGCGGTGGGGGGCGTTACTGATGAAATCACATTAATAAACCACACCGAATTCCAGCGGGGGGGGAGGGGGATGGGGAGCAACCAGCGGCGCGTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAg < 7:8251/139‑1 (MQ=255)
gggggggtgggGGGCGTTACTTAAGAAATAAAATAAACAAACCCCACCCAACCCCCGGGGGTGGGGAGGGGGTTGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAg < 1:401309/135‑1 (MQ=255)
cgggCGGTGGTGGGAGTTAATGAATTAATCACATAACTAAACCACACCGAATTCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAg < 3:680581/138‑1 (MQ=255)
cTGGGGGTGGTGGTTGGTACTGATCTAATAACTTTATGAACCCCCACCGAACTCCCGCGGGGGGGTAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATATAATGTTCAAACTGTTGCTGATAACTGAg < 1:785954/140‑1 (MQ=255)
cTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAg < 3:1170934/140‑1 (MQ=255)
cTGGCGGTGGTGGGCGGTACTGAAGAAATCACATTACGAAACCCCCCCGAAATCCCGCGGGTGGGGAGGGGGAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTg < 6:1092524/138‑1 (MQ=255)
ggtggGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGATGATAACTGAGCACTTCTg > 8:238802/1‑140 (MQ=255)
cGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTcc > 5:1074251/1‑138 (MQ=255)
tACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCCGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCcggcgg > 7:281078/1‑140 (MQ=255)
gAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGCGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCt > 5:1135155/1‑138 (MQ=255)
aaGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCg > 4:933432/1‑140 (MQ=255)
tAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACGTCTGGTCCGGCGGCTTCGAAg > 8:677699/1‑140 (MQ=255)
aTCACATTAATAAAACACACCGAAATCCAGGGGGTGGGGTGGGGTAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAg < 5:614605/138‑1 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCACCCAGCGGCGCTTCCCGCTCCCCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 1:984285/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCACCCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 8:1068720/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCTCCATAAAATGTTCAAACTGTTGCTGATAACTGCGCACTTCTGGTCCGGCGGCTTCGAAGAt > 3:876442/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 1:1177993/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 4:129670/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 4:506579/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTGCgatgat > 1:582877/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGAACTTCTGGTCCGGCGGCTTCGAAGAt > 3:1110122/1‑140 (MQ=255)
cacaTTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 6:518684/1‑138 (MQ=255)
cacaTTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 5:666284/1‑138 (MQ=255)
cacaATAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGAGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCAGATAACTGAGCACTTCTGGTCCGGCGGCTTCTAAGAt > 5:430719/1‑138 (MQ=255)
acaTTACTAACCCCCACCTAAATCCCGCGGGGGGGGTGGGGGAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCg < 8:312886/140‑1 (MQ=255)
aaTTAAGAAACCACACCGAAAGCCCCCGGGGGGGGAGGGGGAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCgg < 8:953886/139‑1 (MQ=255)
ataaaGAACCCCCCCCTAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGgt < 1:1048647/137‑1 (MQ=255)
aTTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGgt > 8:358512/1‑140 (MQ=255)
aaCCCCACCCAAATCCAGCGGGGGGGGCGGGGGAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCa < 8:662707/140‑1 (MQ=255)
cacacaGAAATCCAGCGGGTGGGGAGGGGGATGGGTAGCAACCAGCGGAGCTTACCGCTAACCGCCATAAAATGTTCAAACTGTAGCTGATAACTGAGCACTTCTGGTCCGGCGGATTCGAAGATGCGGTGTTCTCAGGc > 3:531564/1‑140 (MQ=255)
cacaCCGAAATCCCGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCGCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGc < 8:15859/140‑1 (MQ=255)
cacaCCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGc > 3:627203/1‑140 (MQ=255)
cacCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTTCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGc > 6:494772/1‑138 (MQ=255)
cacCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGAt > 6:989264/1‑89 (MQ=255)
cacCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGAt < 5:989264/89‑1 (MQ=255)
cacCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGc > 6:427273/1‑138 (MQ=255)
cacCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCGCACCGCCATAAAATGTTCAAACTGTTGATGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCATGCCg > 3:1129099/1‑140 (MQ=255)
cacCCAAATCCCGCGGGGGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGc < 6:472065/138‑1 (MQ=255)
acCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCgg > 3:156461/1‑140 (MQ=255)
cctaaaTCCCGCGGGTGGGGAGGGTGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGga < 4:403578/137‑1 (MQ=255)
cctaaaTCCAGCGGGTGGGGCGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCg < 6:903984/135‑1 (MQ=255)
ccGAAATCCCGCGGGTGGGGCGGGGTATGGCGAGCAACCAGCGGCGCTTACCGCTCACCGCAATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCg < 6:1022947/138‑1 (MQ=255)
ccGAAATCCAGGGGGTGTGGTGGGGGCTGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGga < 4:23595/140‑1 (MQ=255)
ccGAAATCCAGCGGGTGGGGTGGGGCATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGga < 1:666116/140‑1 (MQ=255)
ccGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGGTCGCAGGCCGga < 1:1116617/140‑1 (MQ=255)
ccGAAATCCAGCGGGGGGGGAGGGGTATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTGCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGga < 3:902252/140‑1 (MQ=255)
ccGAAATCCAGCGGGGGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGga < 8:58596/140‑1 (MQ=255)
cagAACTCCCGCGGGGGGGGAGGGGGAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGga < 2:577933/138‑1 (MQ=255)
cGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGgat > 1:959843/1‑140 (MQ=255)
tCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGGATGATCt > 3:655351/1‑140 (MQ=255)
aGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGGATGATCTAAc > 2:676512/1‑140 (MQ=255)
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AAGCGATCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGGATGATCTAAC > NZ_CP022686/4412146‑4412423
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
