Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,412,284 |
A→C |
10.6% |
W241G (TGG→GGG) |
ybjT ← |
SDR family oxidoreductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,412,284 | 0 | A | C | 10.6%
| 441.4
/ 4.4
| 227 | W241G (TGG→GGG) | ybjT | SDR family oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base A (124/62); new base C (2/29); total (126/101) |
| Fisher's exact test for biased strand distribution p-value = 1.15e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 228 total aligned reads displayed.
AAGCGATCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGGATGATCTAAC > NZ_CP022686/4412146‑4412423
|
aGCGATCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGCTCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGc < 1:1346465/140‑1 (MQ=255)
gATCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGGGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCg < 4:1127634/138‑1 (MQ=255)
aTCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCgg < 4:927945/138‑1 (MQ=255)
tCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCCGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCAAAATGCAGCgggag > 1:1078039/1‑138 (MQ=255)
tCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTg > 2:692614/1‑140 (MQ=255)
ccGTTGTGGGAGGAGCCCACGTCGCGCGGTGTCCGCCGCCAGCAGATCGTGTTCCACCCCCTGAATCACCGCCCTGGGGGTGGGGGGCGGTACTGAAGTAATCACATAAACAAACCACCCCGAAATCCAGCGGGTGGGGa < 6:63252/140‑1 (MQ=255)
ttGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAggg > 8:1063422/1‑140 (MQ=255)
gtgGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAggg > 4:176046/1‑138 (MQ=255)
aTGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTggg < 6:1047777/128‑1 (MQ=255)
taGCGCACGTAGCGCGGTGTCATCCGCCAGCTTATCTTGTTTCAGCCCGTTAATCAACGCCATGGCGGGGGTGGGCGGTACTGATGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGa < 2:922650/139‑1 (MQ=255)
gAGCGCAGGTAGTGCGGTTTCATCCGCCAGCAGATCTTTTTTCAGCCCATTAATCAACGCCCGGGGGGTTGTGGGCGGTACTTAAGAAATAAAATTAATAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGa < 8:636873/140‑1 (MQ=255)
gAGCGCAGGTAGCGCGGTGTCATCCGCCCGCCGATCGGGTTTCAGCCCCTGAATCACCGCCCTGGCGGTGGTGGGCGGTACTGAATTAACCACATTAAGAACCCACACCGAAATCCCGCGGGTGGGGAGGGGGATGGGGa < 1:298220/140‑1 (MQ=255)
gAGCGAACGTAGCGCGGTGTCATCCGCAACCAGATCGTGTTGAAGCCCCTGAATCACCGCCCTGGCGGTGGGGGGCGGTACTGAAGAAATCACATTAAGAACCCACACCCAAACCCAGGGGGGGGGGAGGGGTATGGGGa < 2:1232752/140‑1 (MQ=255)
aGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCACCGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAGTCCAGCGGGTGGGGAGGGGGATGGGGAg > 8:34481/1‑140 (MQ=255)
aGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAg > 5:623823/1‑140 (MQ=255)
cgcACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAg > 3:221407/1‑138 (MQ=255)
cACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGcc > 3:1163114/1‑137 (MQ=255)
cgtcgggcgGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCGGGCGGTGGGGGGCGGTACTGAAGTAATCAAATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCa < 6:431769/134‑1 (MQ=255)
cgggcgGGGGCATCCGCCAGCAGAGCGAGTTTCCGCCCCTGAAGCAACGCCCTGGCGGTGGTGGGCTGTACTGAAGTAATCACATTAAGAACCCACCCCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAg < 4:154350/135‑1 (MQ=255)
cgcgGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACCCCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCACCCAgcggc > 6:1167019/1‑140 (MQ=255)
gtgtCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGTAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCtt > 7:618017/1‑140 (MQ=255)
gtgtCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCCCCCCGAAATCCAGCGGGTGGGGAGGGGGATGGGGCGCCACCAGCGGCGCtt > 8:517458/1‑140 (MQ=255)
gtgtCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCtt > 2:384610/1‑140 (MQ=255)
gtgtCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGGGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACCCCGCAATCCAGCGGGTGGGGAGGGGGATGGGGAGCCACCAGCTGCGCtt > 6:248166/1‑140 (MQ=255)
gtCATCCGCCCGCACATCGTGTTCCAGCCCCTGAAGCCACGCCCTGGCGGGGGGGGGCGGTACTGAAGTAATCACATTAAGAAACCACCCCTAAACCCAGCGGGGGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTAc < 5:637436/140‑1 (MQ=255)
gtCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCtt > 3:660666/1‑138 (MQ=255)
cATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTAc > 3:789133/1‑138 (MQ=255)
cGCCAGCAGTGCGGGTTCCACCCCCTCAAGCACCCCCGGGGCGGTGGGGGGCGGTACTGATGTAACCACATTACCAACCCCCACCGAACCCCAGGGGGGGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCa < 6:510623/140‑1 (MQ=255)
cccAGCATATCGTGTTTCAGCCCCTTAATAAACGCCCTGGGGGTGGGGGGCGGTACTGATGTAAACACATTAATAACCCACACCGAAATCCAGGGGGTGGGTAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCAc < 2:1301923/139‑1 (MQ=255)
tCGTGTTTCAGCCCCTGAATCAACGCCCAGGCGGTGGTGGCCGGTACTGAAGTAATCACATTAAGAAACCACACCGATATCCAGCGGGTGGGGAGGGGGAGGGCGAGCAACCAGCGGCGCTTACCGCTCCCCGCCATaaa > 1:1024399/1‑140 (MQ=255)
cGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATaaaa > 2:358513/1‑140 (MQ=255)
gtgtTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATAACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAAt > 2:449402/1‑140 (MQ=255)
tttCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAATTAATCACATTAAGAAACCAAACCTAAATCCTGCGGGTGGGTAGGGGTATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGtt < 5:351523/140‑1 (MQ=255)
ttCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTc > 2:1358656/1‑140 (MQ=255)
ttCAGACCCTGAATCCACGCCCTGGCGGTGGTGGGCGGTACTGAAGGAATCACATAACGAAACCACACCGCAATCCCGAGGGTGGGGAGGGGGCTGGGGAGCAACCCGCGGCGCTTACCGCTCACCGCCATAAAATGATc > 2:1129758/1‑140 (MQ=255)
tCAGCCCCTTAATCAACGCCCTGGGGGTGGTGGGCGGTACGTAATTAATCAAATTAAGAAACCACCCCGAACTCCCGCGGGGGGGGTGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGtt < 4:338973/138‑1 (MQ=255)
tCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAACCCCCACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCa > 6:397585/1‑140 (MQ=255)
cccTGCATCAACCCCCTGGGGGTGGGGGGCGTTACGGAAGTAATCCCATTAAGCAACCACCCCTAAACCCAGCGGGGGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAAc < 3:88681/138‑1 (MQ=255)
cccTGAATCAACGCCGTGGCGGTGGTGGGGGGTACTTAATTAAACAAATTAAGAAACCACACCGAAATCCTGCGGGGGGGGAGGGGTAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAAc < 4:549637/138‑1 (MQ=255)
ccagtaaTCAAGGCCGGGGCGGTGGTGGGCGGTACTGAAGTAATCACTTTATGAAACCACACCGAAATCCAGGGGGTGGGGTGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTg < 7:1144875/135‑1 (MQ=255)
cagttgttCAAGGCCCTGGGGTTTGTGTTCTGTTGTGATGTAATCACTTTAAGAAACAACACCCAATTGCAGCGGGGGTGGTGGGGTATGGGGAGCAACCAGCGGCGGTTACAGCTCACCGCCATAATATGTTCAAACTg < 6:349833/133‑1 (MQ=255)
ccTTAATCAACGCCGTGGGGTTGGTGGGCGTTACTTAAGTAATCACATTAAGAAAACACACCTAAATGCTGCGGGTGGGGAGGGGGTTGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGt < 5:1017181/140‑1 (MQ=255)
cTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTCCCGCTCCCCGCCATAAAATGTTCAAACTGtt > 6:1113850/1‑140 (MQ=255)
actCAACGCCCTGGCGGTGGGGGGCGTTACTGAAGAAATACCATTACCAAACCACACCGAAATCCCGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTg < 4:1075820/136‑1 (MQ=255)
aaTCAACGCCCTGGCGGTGGTGGGCGGTACTGAATTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCt < 2:1160757/140‑1 (MQ=255)
tCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCt < 4:415040/138‑1 (MQ=255)
cggCCCTGGGGGTGGTGGGCGGTACTGAAGTAATCACATTAATAAACCCCACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGAt < 4:639549/136‑1 (MQ=255)
ccGCCCTGGCGGGTGGGGGCTGTACTGAACTAATCACATTAAGAACCCACACCGAAATCCCGCGGGGGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATaa < 8:410931/139‑1 (MQ=255)
aCGCCCTGGCGGGGGTGGGCGGTACTGAAGTAAACACATTAATAAACCACACCTAAATCCAGCGGGGGGGGAGGGGGATTGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATaa < 7:1070162/140‑1 (MQ=255)
cGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAAc > 5:1279537/1‑140 (MQ=255)
gCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGCGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCAAAAAATGTTCAAACTGTAGCTGATaa > 4:386999/1‑138 (MQ=255)
cccTGGCGGTGGGGGGCGGTACTGATGTAATCACATAAAGAACCAACACCTAAAGCCCGCGGGGGGGGAGGGGGAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTg < 1:1240491/140‑1 (MQ=255)
gtGGCGGTGGTGGGCGGTACTTAATTAATCACATTAACAAACCACACCGAAATCCCGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAg < 1:607545/139‑1 (MQ=255)
cTGGGGGGGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGGGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTg < 4:604577/138‑1 (MQ=255)
cTGGCGGTGGTGGGCGGTAATGAAGTAATCACATTACGAAACCACCCCGAAATCCAGCGGGGGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAg < 1:578167/140‑1 (MQ=255)
ggCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCa > 8:833892/1‑140 (MQ=255)
ggCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCGGATAACTGAGCa > 7:799467/1‑140 (MQ=255)
ggCGGTGGTGGGCGGTAATGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGTGGGATGGGGAGCCACCAGCGGCGCTTACCGCTCCCCGACCTAAAATGTGCAAACTGAGGCTGCTAACTgcgcc > 8:1253833/1‑139 (MQ=255)
gtggGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCTCAATAAAATGTTCAAAATGTTGCTGATAACTGAGCACTTCTgg > 5:878836/1‑140 (MQ=255)
gtggGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGCCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTgg > 7:380305/1‑140 (MQ=255)
tggGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTg > 3:918453/1‑138 (MQ=255)
gggTACTTATGTAATCAAATAAATAAACCACACCTAAATCCCGGGGGTGGGGAGGGGGAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTcc < 4:913679/137‑1 (MQ=255)
ggTACTGAAGTAATCACATTAAGAACCCACACCTAAACCCAGCGGGTGGGGTGGGGTAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTACAAACTGTTGCTGATAACTGAGCACTTCTGGTCcggc < 5:1038834/140‑1 (MQ=255)
ttatgTAATCACTTTAAGAAACCACCCCGAATTCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCggctgc < 4:882373/134‑1 (MQ=255)
gTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGaa > 1:471903/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCCCCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACATCTGGTCCGGCGGCTTCGAAGAt > 1:116543/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAAGTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 1:1360076/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 5:1227840/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 1:959390/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 1:828845/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 6:1099251/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 5:1256714/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 8:214397/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 6:150507/1‑140 (MQ=255)
aTCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 1:798899/1‑140 (MQ=255)
aTCACATTAAGAAACAACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGa < 6:1008430/52‑1 (MQ=255)
acacaTTAAGAAACCCCACCCAAATCCCGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATg < 5:804277/139‑1 (MQ=255)
cacaTTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 4:797846/1‑138 (MQ=255)
cacaTTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGAt > 4:441071/1‑138 (MQ=255)
cacaTTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGc > 2:274076/1‑140 (MQ=255)
caTTAAGAAACCACACCTAAATCCCGGGGGGGGGGAGGGGGTTGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGc < 3:121733/138‑1 (MQ=255)
aTTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGgt > 5:573748/1‑140 (MQ=255)
aTTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGgt > 5:592261/1‑140 (MQ=255)
tAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGACATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGgt > 4:188127/1‑138 (MQ=255)
aaCCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTg > 3:355522/1‑89 (MQ=255)
cacaCCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCCCCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGc > 1:361975/1‑140 (MQ=255)
cacaCCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGc > 5:1097879/1‑140 (MQ=255)
cacaCCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGc > 7:130337/1‑140 (MQ=255)
cacaCCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGc < 6:1279537/140‑1 (MQ=255)
acCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCgg > 2:212788/1‑140 (MQ=255)
cctaaaGCCCGCGGGGGGGGAGGGGGAGGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGga < 2:872369/137‑1 (MQ=255)
ccGAAATCCCGGGGGTGGGGCGGGGTTGGGGGAGCAACCAGCGGAGCTTACCGCTCACCGCCATAAAATGTTCATACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGga < 5:345237/140‑1 (MQ=255)
ccGAAATCCCGCGGGTGGGGTGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGga < 7:264366/140‑1 (MQ=255)
ccGAAATCCAGCGGGTGGTGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGga < 1:884607/140‑1 (MQ=255)
ccGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCg < 3:1291594/138‑1 (MQ=255)
acGAAATCCCGCTTGAGGGGAGGGGGATGTTGAGCAACCAGCTGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGTTGTTCGCAGGCCGga < 5:307915/139‑1 (MQ=255)
gAAATCCAGCGGGTGGGCAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCAATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGATCTCAGGCCGgatg > 7:964760/1‑140 (MQ=255)
aaaTCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGgatga > 5:1053461/1‑140 (MQ=255)
ccAGCGGGGGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGGATGATCTa < 2:962532/140‑1 (MQ=255)
aGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGGATGATCTAAc > 8:784528/1‑140 (MQ=255)
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AAGCGATCAGCCGTTGTGGGATGAGCGCACGTAGCGCGGTGTCATCCGCCAGCAGATCGTGTTTCAGCCCCTGAATCAACGCCCTGGCGGTGGTGGGCGGTACTGAAGTAATCACATTAAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGAGCAACCAGCGGCGCTTACCGCTCACCGCCATAAAATGTTCAAACTGTTGCTGATAACTGAGCACTTCTGGTCCGGCGGCTTCGAAGATGCGGTGTTCGCAGGCCGGATGATCTAAC > NZ_CP022686/4412146‑4412423
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
