Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F13 I0 R1
|
230 |
5035.0 |
9125430 |
98.4% |
8979423 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,605,579 |
T→G |
15.9% |
T56P (ACG→CCG) |
CIW80_RS23010 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,605,579 | 0 | T | G | 15.9%
| 176.6
/ 2.3
| 121 | T56P (ACG→CCG) | CIW80_RS23010 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (8/87); new base G (14/9); total (25/96) |
| Fisher's exact test for biased strand distribution p-value = 2.50e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 121 total aligned reads displayed.
CCGCCAGCATGACTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑CCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACTTAAT > NZ_CP022686/4605447‑4605717
|
ccGCCAGCATGACTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCACCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGa < 5:46495/140‑1 (MQ=255)
ccGCCAGCATGACTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAATAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGa < 2:143949/140‑1 (MQ=255)
gCATGACTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGc < 4:68511/140‑1 (MQ=255)
gCATGACTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGc < 2:9155/140‑1 (MQ=255)
cATGACTGCGTTAACCACTACCGTGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACACCAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACgggg < 8:143866/138‑1 (MQ=255)
aCTGCGTTAACCACTACCGGGGAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACACTGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTgg < 8:976513/138‑1 (MQ=255)
cggtAACCACTCCCGGCTAAACCAGCAGTAACTGGTACGATTTCAACAGAAAACTGGAGACACACAATACAATCCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTggcg‑cagg < 3:589387/137‑1 (MQ=255)
cGTTAACCACTACCGGGTAAAACAGCAGTATCTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTggcg‑ca < 7:722931/138‑1 (MQ=255)
cGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCTCGGGCGGCCGGGGAggcg‑ccgg > 5:506788/1‑140 (MQ=255)
gTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTggcg‑caggc < 3:875950/140‑1 (MQ=255)
aaCCACTACCGGGTAATACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACATCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTggcg‑caggcg < 7:309047/138‑1 (MQ=255)
aaCCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTggcg‑caggcgca < 5:533537/140‑1 (MQ=255)
aaCCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTggcg‑caggcgca < 6:1042680/140‑1 (MQ=255)
cACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGCCCTGGAGCGGCCCCCGCAGGGGCCGGGGCGTGGG‑CAAGCGCaa > 8:92847/1‑138 (MQ=255)
tACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATaaaa > 4:647129/1‑140 (MQ=255)
tACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGGCTGGCGCCGGGGGTGGCG‑CAGGCGCCATaaaa > 6:1013136/1‑140 (MQ=255)
gTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCGGGGGCCGGGGCTGGCG‑CCGGCGCAAAAAAAACcaca > 2:727160/1‑140 (MQ=255)
aaaCAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAgcg < 4:342542/140‑1 (MQ=255)
aaCAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCTCGGGCGCAGGGGCTGGCG‑CCGGCGCAATAAAAACAACAgcgc > 2:665776/1‑140 (MQ=255)
cctcagTAACTGGAACGTTTTCAACAGAAAACTGGATACACAAAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCa < 4:75031/137‑1 (MQ=255)
cagcagTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCa < 3:1136879/140‑1 (MQ=255)
cagTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCTGGCGACGGGGCTGGCG‑CAGGCGCCATAAAACCAACAGCCCCAACa > 3:622950/1‑140 (MQ=255)
agTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAg < 2:630330/140‑1 (MQ=255)
aCTGGTACTTTTTCAACACAAAACTGGAGACACACAATACAATGCCCACCACAGCAACGATTTTTGTGACGACCTGTCGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCAGCAGCGGc < 6:1052460/140‑1 (MQ=255)
cTGGTACTTATTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGTCGCAATAAAAGCAACAGCGCCATCAGCGGCa < 6:187360/140‑1 (MQ=255)
cTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCgg < 8:201867/138‑1 (MQ=255)
cTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCgg < 8:518456/138‑1 (MQ=255)
cTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCa < 6:1023858/140‑1 (MQ=255)
tACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAAAAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAg < 6:791231/140‑1 (MQ=255)
ccGTTTTCAACCGAAAAATGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACa < 8:212789/137‑1 (MQ=255)
ccGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGGCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGc < 2:4366/139‑1 (MQ=255)
aCGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACa < 8:335226/138‑1 (MQ=255)
aCGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGc < 3:962605/140‑1 (MQ=255)
aCGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGc < 4:274955/140‑1 (MQ=255)
aCGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGc < 3:1158080/140‑1 (MQ=255)
aCGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGc < 2:751501/140‑1 (MQ=255)
aCGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGc < 1:820711/140‑1 (MQ=255)
aCGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGc < 5:7518/140‑1 (MQ=255)
aCGTTTTCAACAGAAAACTGGAGACACACAATACAAAGCCCACAACAGCAACGATTTTTGGGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCGGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACa < 7:625911/138‑1 (MQ=255)
cGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAg < 8:344053/138‑1 (MQ=255)
tttCAACAGAAAACTGGAGACACGCAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCTGGGGCCCGGGCTGGCG‑CAGGCGCCAAAAAAGCAACCGCGCCCTCAGCCGCCACAcccccg > 2:743854/1‑137 (MQ=255)
tCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCTGGGGCCCGGGCGGGGGCCGGGCGC‑ATAAAAACAACACCCCCAACAGCGGCAACAAcccgggg > 5:106827/1‑135 (MQ=255)
ccaCAGAAAACTGGAGACACACAATCCAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGGCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTg < 8:257101/136‑1 (MQ=255)
cAACAGAAAACTGGAGCCACACAATCCAATGCCCACACCAGCAACGATTTTTGTGACGACCTGGATCTGCCCCGTCTGGCGACGGGGCGGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTg < 7:1066786/138‑1 (MQ=255)
cAACAGAAAACTGGAGACACACAATACACTGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCa < 3:623091/140‑1 (MQ=255)
cAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCa < 5:516233/140‑1 (MQ=255)
cAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCa < 1:642296/140‑1 (MQ=255)
cAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCACCACTGGCGAAGGGGCGTGCG‑CAGGGGCAAAAAAAGCCACACCGCCAGAAGCCGCAACCGccctag > 8:259628/1‑134 (MQ=255)
agaCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCa < 3:359653/138‑1 (MQ=255)
aCAGAAAACTGGAGACACACAATACAATGCCCCCAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAgg < 5:690251/140‑1 (MQ=255)
aCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTTGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGGGCa < 7:956088/138‑1 (MQ=255)
aCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCa < 7:268655/138‑1 (MQ=255)
aCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAgg < 3:495580/140‑1 (MQ=255)
aCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAgg < 2:343162/140‑1 (MQ=255)
aCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGGCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAgg < 3:892610/140‑1 (MQ=255)
aCAGAAAACTGGAGACACAAAATACAATGCCCACAACCTCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCa < 7:98607/138‑1 (MQ=255)
aaaCTGGAGACCCACAATACAATGCCCACAACCGCAACGATTTTTGTGCCGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGtt < 3:774865/140‑1 (MQ=255)
aaaCTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGtt < 5:733655/140‑1 (MQ=255)
aaCTGGAGACACACAATACACTGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGGCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTa < 2:881167/140‑1 (MQ=255)
aaCTGGAGACACACAATACAATGCCCACCACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTa < 3:681743/140‑1 (MQ=255)
aaCTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTa < 1:427734/140‑1 (MQ=255)
aaCTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTa < 3:273345/140‑1 (MQ=255)
aaCTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCGGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTa < 5:621881/140‑1 (MQ=255)
aaCTGGAGACACACAATACAATGCCCACAACAGCAACGATGTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTa < 4:265665/140‑1 (MQ=255)
aaCGGGAGCCACACAATACACTGCCCCCACCCGCAACGATTTTTGTGCCGCCCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAACGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGt < 8:254114/138‑1 (MQ=255)
gagcCACACAATACAAAGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCTACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCAc < 6:434483/140‑1 (MQ=255)
gagaCCCACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGc < 7:651481/138‑1 (MQ=255)
gagaCACACAATACACTGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCAGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCAc < 6:86941/140‑1 (MQ=255)
gagaCACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGc < 7:229831/138‑1 (MQ=255)
gagaCACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCAc < 4:666731/140‑1 (MQ=255)
gagaCACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCAc < 2:364442/140‑1 (MQ=255)
gagaCACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCAc < 1:727160/140‑1 (MQ=255)
gagaCACACAATACAATGCACACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTTGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCAc < 2:1007589/140‑1 (MQ=255)
gaCACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑a < 3:153612/140‑1 (MQ=255)
cacacaATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑aaa < 6:144617/140‑1 (MQ=255)
atacaatGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑c < 4:425759/140‑1 (MQ=255)
atacaatGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑c < 3:291067/140‑1 (MQ=255)
atacaatGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑c < 5:1008415/140‑1 (MQ=255)
atacaaaGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGAGACGGGGCTGGCG‑CAAGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGTAGGCTGTTATGCACC‑AAACCTAG‑c < 3:863059/140‑1 (MQ=255)
aatGCCCACAACAGCATCGATTTTTGTGACGACCTGGAGCGGCCCCGGCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑CCAGa < 3:444308/140‑1 (MQ=255)
tGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCGGGCGCCGGGGGTGGGG‑CCGGCGCAATTAAAGACACAGCGCCATCAGCGGCAACAGCCAGTGGAGGCGGTTATGCACC‑CAACCAAG‑CCacaat > 2:887294/1‑136 (MQ=255)
gCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCGGGCGCCGGGGCTGGCG‑CAGGCGCCAAAAAAGCAACAGCGCCATCATCCGCCACACCCACTGCACGCTGGTATGCACC‑AAACCTAG‑CCAGAt > 8:359954/1‑138 (MQ=255)
gCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCACTGGGGACAGGGCTGGCG‑CCGGGGCAAAAAAAAAAAAAGAGCCAGCAGCGGCAAAAACAAGGGGATGCTGGTAT‑CACCAAAACCTAgacccat > 8:792763/1‑132 (MQ=255)
ccACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCGGGGGCCCGGGCGGGCG‑CCGGCGCCAAAAAAACAACACCCCCCGCAGCCGCACCAACCACGGCCGGGGGGTTTTGACC‑AAACCAAG‑CCAGATTa > 8:984761/1‑138 (MQ=255)
cacaACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑CCAGATTaaaa < 5:268565/140‑1 (MQ=255)
acaacaGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCTAAGGGGACCGGGCGGGCG‑CACGCGCAAAAAAATAAACAACCCCAACAACGGCAACACCCACTTGAGGGGGTTATTCACC‑AAAACGAGCCCAGATTaa > 8:863040/1‑138 (MQ=255)
caGCAACTATTTTTGTGCCGACCTGGAGCGGCCCCGGCTGGCGACGGGGCTGGAG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGATGTTATGCACC‑AAACCTAG‑CCAGATTAAAAAAGGc < 5:14874/140‑1 (MQ=255)
aaCGATTTTTGTGACGACCTGGTGCGGCGCCGTCTGGCGAGGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCGAGTGCAGGCTGTTATGCACC‑AAACCTAG‑CCAGATTAAAAAAGGCCAGa < 5:571603/140‑1 (MQ=255)
ttttttGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑CCAGATTAAAAAAGGCCAGACGag < 5:998625/139‑1 (MQ=255)
ttttttGGGCAGACCCGGGGCGGGCCCGGCTGGCGTCGGGGGGTGCG‑GCTGGGTCATTAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAT‑CCATATTAAAAATGGCCAGACGag < 1:168595/139‑1 (MQ=255)
aTTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑CCAGATTAAAAAAGGCCAGACGag < 4:679401/140‑1 (MQ=255)
aTTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑CCAGATTAAAAAAGGCCAGACGag < 1:56042/140‑1 (MQ=255)
tttGTGACGACCTGGAGCGGCCCCGGCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑CCAGATTAAAAAAGGCCAGACGagcag < 3:568235/140‑1 (MQ=255)
tgtgACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑CCAGATTAAAAAAGGCCAGACGagcag < 7:832539/138‑1 (MQ=255)
ccTGGAGCGGCCCCGTCTGGCGACGGGGCGGGCG‑CAGGCGCAATAAAAGCAACAGCGACATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑CCAGATTAAAAAAGGCCAGACGAGCAGCAATAATc < 7:784493/138‑1 (MQ=255)
aGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑CCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAg < 5:133335/140‑1 (MQ=255)
ccGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑CCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACTTa < 3:1140326/140‑1 (MQ=255)
ccGGCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGAAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑CCAGTTTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACTTa < 6:487263/140‑1 (MQ=255)
gTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑CCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACTTa < 7:756126/138‑1 (MQ=255)
gTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑CCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACTTAat < 2:466397/140‑1 (MQ=255)
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CCGCCAGCATGACTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACC‑AAACCTAG‑CCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACTTAAT > NZ_CP022686/4605447‑4605717
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
