Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F35 I0 R1 195 10216.4 8585726 98.3% 8439768 135.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NZ_CP022686 4,605,579 T→G 14.8% T56P (ACG→CCG)  CIW80_RS23010 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0226864,605,5790TG14.8% 147.4 / 3.3 98T56P (ACG→CCG) CIW80_RS23010hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (4/75);  new base G (8/6);  total (17/81)
Fisher's exact test for biased strand distribution p-value = 1.12e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGCCAGCATGACTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACTTA  >  NZ_CP022686/4605448‑4605715
                                                                                                                                   |                                                                                                                                        
cGCCAGCATGACTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGATGGCGAc                                                                                                                                  >  4:662942/1‑140 (MQ=255)
    aGCATGACTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACgggg                                                                                                                              <  4:857316/140‑1 (MQ=255)
      cATGACTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCt                                                                                                                            <  2:416825/140‑1 (MQ=255)
          aCTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTggcg                                                                                                                        <  2:34096/140‑1 (MQ=255)
              cGTTAACCACTCCCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTggcgcagg                                                                                                                    <  7:438170/140‑1 (MQ=255)
              cGTTAACCACTACCGGGTAAAACAGCAGTTACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACACCAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTggcgcagg                                                                                                                    <  1:384557/140‑1 (MQ=255)
              cGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTggcgca                                                                                                                      <  5:859360/138‑1 (MQ=255)
              cGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGACTTAGGACGGGGGGggggcagg                                                                                                                    >  1:1076339/1‑140 (MQ=255)
              cGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAAAGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTggcgca                                                                                                                      <  6:787183/138‑1 (MQ=255)
              cGTTAACCACTACCGCGTAACACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGAACTGTAGCGGCCCCGGCTGGCGACGGGGCTggcgcagg                                                                                                                    <  1:1012212/140‑1 (MQ=255)
                   aCCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCCCCGGGGCCCGGGCAggcgcacgcgcca                                                                                                               >  1:666533/1‑138 (MQ=255)
                     cACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAACACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCaa                                                                                                               <  6:959355/138‑1 (MQ=255)
                     cACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCTCGGGCGGCGGGGGTggcgccggggcca                                                                                                               >  6:978831/1‑136 (MQ=255)
                       atACCGGTTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATaaa                                                                                                           <  7:985557/139‑1 (MQ=255)
                        tACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACATCACCGATTTTTGTGACGACCTGGAGCGGCCCCCCATTGCGACGGGGGGGGGGCAGGCGGaaataaa                                                                                                          >  1:468044/1‑135 (MQ=255)
                        tACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGCGTTTTGTGACGACCTGGAGCGGCCCCCGCTGGCGGACGGGCTGGCGCCGGGGCAATaaaa                                                                                                          >  8:588531/1‑140 (MQ=255)
                           cGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAg                                                                                                         <  6:288328/138‑1 (MQ=255)
                             ggTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACACCAACGATTTTTGTGCCGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAAc                                                                                                     <  8:540599/140‑1 (MQ=255)
                              gTAAAACAGCAGTAACTGGTACGTTTTAAACAGAAAAATGGAGACCCACAATACACTGCCAACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGTGGCTGGCGCAGGCGCAATAAAAGCAACa                                                                                                    <  7:963290/140‑1 (MQ=255)
                               tAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCCCGGGCGCCCGGGGGGGCGCCGCGGCAAAAAAaacaaccc                                                                                                   >  8:872851/1‑138 (MQ=255)
                                       cagTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCGGGCGCCGGGGCGGGCGCCGGCGCCAAAAAACCACCACCCCCaacc                                                                                           >  8:119346/1‑137 (MQ=255)
                                        agTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCCCAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAg                                                                                          <  1:118288/140‑1 (MQ=255)
                                        agTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACTCCCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAg                                                                                          <  8:56999/140‑1 (MQ=255)
                                         gTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGGGGGCGCCGGGGGGGGCGCCGGCGCCAAAAAAACAACAACCCCAACa                                                                                           >  6:977026/1‑138 (MQ=255)
                                             cTGGTACGTTTTCAACAGAAAACTGGAGCCACACAATACAATGCCCTCAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCGGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCgg                                                                                       <  5:940321/138‑1 (MQ=255)
                                             cTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCa                                                                                     <  4:153025/140‑1 (MQ=255)
                                             cTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCa                                                                                     <  2:797235/140‑1 (MQ=255)
                                             cTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAAAGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCa                                                                                     <  7:290595/140‑1 (MQ=255)
                                             cTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAAAGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCa                                                                                     <  4:716829/140‑1 (MQ=255)
                                                  aCGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGTTTTTTGTGAGGAGCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGc                                                                                <  4:131741/140‑1 (MQ=255)
                                                  aCGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGc                                                                                <  3:131910/140‑1 (MQ=255)
                                                  aCGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGc                                                                                <  4:213645/140‑1 (MQ=255)
                                                  aCGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGc                                                                                <  1:160578/140‑1 (MQ=255)
                                                   ctttgtCAACAGAAAACTGGAGACACACTAATCAATGCACACAACCGCAACGATTTTTGTGAAGACCTCGATCCGCACCGTCAGTCGACGGGTCTGGCGCAGGCGAAATAAAATCAACAGCGACATCAGCGGCAACAGcc                                                                               <  8:582024/135‑1 (MQ=255)
                                                      tttCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGCCCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGt                                                                            <  4:934987/140‑1 (MQ=255)
                                                        tCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCGTGGGGCGGGGGTGGCGCCGGCGCAAAAAAAACAACAGCGCCCTACGCGGCCACCGCCCGTGc                                                                          >  4:61052/1‑140 (MQ=255)
                                                         cAACAGAACACTGGAGACACACAATTCTATTCCAACCACCGCAACGACTTTTGTGACGACCAGGAGCGGCCCCGTCTGGCGACGGGGTTGGCGCAGGCGCAATAATATGACCAGCGCCATCAGCGGCAACAGCCAGTg                                                                           <  5:1050917/138‑1 (MQ=255)
                                                          aaCAGAAAACTGGAGACACACAATACAATGCCCCCAACAGCACCGATTTTTGTGACGACCTGGAGCGGCCCCCGGTTGGGCGGGGGGTGGGGCCGGGGCCATAAAATGAACAGCGCCCACAGCGGCCACAGCCacggg                                                                          >  6:256671/1‑134 (MQ=255)
                                                           aCAGAACACTGGAGACACACAATACAAGGCCCACACCAGCAACGCTATTTGTGACGACCCGGCGCGGCCCCGGCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAgg                                                                       <  3:1023506/140‑1 (MQ=255)
                                                           aCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGCCCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAgg                                                                       <  2:969468/140‑1 (MQ=255)
                                                           aCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCa                                                                         <  6:396987/138‑1 (MQ=255)
                                                           aCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCa                                                                         <  6:878274/138‑1 (MQ=255)
                                                           aCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAgg                                                                       <  1:203215/140‑1 (MQ=255)
                                                           aCAGAAAACTGGAGACACACAATACAATCCCCACAACAGCAACGATTTTTGGGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCACCAGCGCCATCAGCGGCAACAGCCAGTGCAgg                                                                       <  4:947826/140‑1 (MQ=255)
                                                           aCAGAAAACTGGAGACACACAATACAATCCCCACAACAGCAACGATTTTTGGGACGACCTGGAGCGGCCCCGGCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCAGCAGCGGCAACAGCCAGTGCAgg                                                                       <  2:946138/140‑1 (MQ=255)
                                                               aaaaCTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCAGGGGCCGGGGCGGGCGCCCGCGCCAAAAAAGAAAAAGCGCCAACACCCGCAACAACCCGTTCAGGCTGt                                                                   >  8:789192/1‑140 (MQ=255)
                                                                aaaaTGGAGACACACAATACACTGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGtt                                                                  <  4:645949/140‑1 (MQ=255)
                                                                aaaCTGGAGACACACAATACCATGCCCACACCAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGGCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTg                                                                    <  5:784923/138‑1 (MQ=255)
                                                                aaaCTGGAGACACACAATACAATGCCCACAACAGCAACTAGTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTg                                                                    <  5:193710/138‑1 (MQ=255)
                                                                aaaCTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGtt                                                                  <  7:443911/140‑1 (MQ=255)
                                                                 aaCTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTa                                                                 <  1:995163/140‑1 (MQ=255)
                                                                 aaCTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTa                                                                 <  7:872851/140‑1 (MQ=255)
                                                                 aaCTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTa                                                                 <  7:169206/140‑1 (MQ=255)
                                                                 aaCTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTa                                                                 <  1:1067190/140‑1 (MQ=255)
                                                                      tagaCACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCAc                                                            <  2:388751/139‑1 (MQ=255)
                                                                      gagaCTAACCATACAATCCCCTCAACAGCACCTATTTTTGTGACGACCGGGAGCGGGCCCGTCTGGCGTCGGGGCGGGCGCAGGCGCAATAAAAGCAACTGCTCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCAc                                                            <  4:270133/140‑1 (MQ=255)
                                                                      gagaCACAGATTACAATGCCCACAACAGCAACGATTTTTGTGAGGAGCTGGTGGGGGCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAATGGAACAGCGCCATCAGCGGGAACAGCCAGTGGAGGCTGTTATGGAc                                                            <  4:1077746/140‑1 (MQ=255)
                                                                      gagaCACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGc                                                              <  6:383444/138‑1 (MQ=255)
                                                                      gagaCACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGc                                                              <  5:350004/138‑1 (MQ=255)
                                                                      gagaCACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCAc                                                            <  1:1034684/140‑1 (MQ=255)
                                                                      gagaCACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCAc                                                            <  3:194827/140‑1 (MQ=255)
                                                                                atacaatGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCTACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGc                                                  <  2:988094/140‑1 (MQ=255)
                                                                                atacaatGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGGCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGc                                                  <  8:798274/140‑1 (MQ=255)
                                                                                ataaaatGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGc                                                  <  8:182519/140‑1 (MQ=255)
                                                                                      tGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCACTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAAAAGCGCCATAAACGGCAACAGCCAGTGCAGGCTGTTATGCAACAAACCTAGCCAGAtt                                            >  8:753499/1‑140 (MQ=255)
                                                                                          cacaACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTaa                                          <  6:975975/138‑1 (MQ=255)
                                                                                          cacaACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCGGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTaaaa                                        <  1:286653/140‑1 (MQ=255)
                                                                                           acaacaGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCTATGGCGCCCGGGCTGGCGCACCCGCCAAAAAAAACACAGCCCCCTAAGCGGCCACAACCCCTTCAGGAGGTTTTGCCCCAAACCTAGCCCGCTTaaaaa                                       >  8:820863/1‑140 (MQ=255)
                                                                                            caacaGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCTCTGGGGGCGGGGCTGGCGCAGGCGCAATAAAAACAACAGCGGCCTCAGCGGCAAACCCCCCTGCAGGCTGTTATGGACCAAACCAAGCCACAATtaaaaa                                      >  4:614802/1‑140 (MQ=255)
                                                                                             aacaGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCGGGCGGCGGGGGTGGCGCCAGCGCAAAAAAAACAACACCGCCCTAGACCGCCACCCCCAGTGGAGGGAGGTATGGCCCAAACCAATCCCGATTaaaaa                                       >  6:70147/1‑138 (MQ=255)
                                                                                               catcAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGAGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGAACCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCACACCTAGCCAGATTAAAAATGGc                                   <  1:570630/137‑1 (MQ=255)
                                                                                                  cAACGATTTTTGTGACGACCTGGAGCGACCCCCTCTGGCGCCGGGGCAGGCGCCGGCGCAATAAAAGCAACAGCGCCAGCCCCGGCAACAGCCAGTGCCCGCTGTTATGCAACAAACCTAGCCAGATTTAAAAAGGCCAg                                >  8:288023/1‑140 (MQ=255)
                                                                                                   aaCGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGa                               <  4:41974/140‑1 (MQ=255)
                                                                                                   aaCGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGa                               <  2:368557/140‑1 (MQ=255)
                                                                                                   aaCGAGTTTTGTGACGACCTGGAGCGGCCACGTCTGGCGACGGGGCGGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCTGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGa                               <  7:96923/140‑1 (MQ=255)
                                                                                                       ttgttggtgACGCCCTGGAGCGGCCCCGTCTGGCGACGGGGCGGGCGCAGGCGCAAGAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGag                           <  4:1057181/134‑1 (MQ=255)
                                                                                                       aTTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGTCGGGGCTGGCGCATGAGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGAGTAAAAAAGGCCAGACGag                           <  8:611817/140‑1 (MQ=255)
                                                                                                       aTTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGag                           <  4:174868/140‑1 (MQ=255)
                                                                                                       aTTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGag                           <  7:979050/140‑1 (MQ=255)
                                                                                                       aTTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGag                           <  8:111765/140‑1 (MQ=255)
                                                                                                       aTTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGAAATAAAAGCACCAGCGCCATCAGCGGCAACAGACAGTGCAGGCTGTTATGCACCACACCTAGCCATATTAAAAAAGGCCAGACGag                           <  8:177102/140‑1 (MQ=255)
                                                                                                       aTTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCGGGCGCATTCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGag                           <  7:686607/140‑1 (MQ=255)
                                                                                                       aTTTTTGTGACGACCGGGAGCGGCCCCGTCTGGCGACGGGGCGGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGag                           <  3:440701/140‑1 (MQ=255)
                                                                                                                       ggAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGAGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCgg             <  5:27452/138‑1 (MQ=255)
                                                                                                                       ggAGCGGCCCCGGCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCgg             <  5:23259/138‑1 (MQ=255)
                                                                                                                         agaggCCGCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCAAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAg         <  8:825595/137‑1 (MQ=255)
                                                                                                                         aGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATATAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTATAAAAGGCCAGACGAGCAGCAATAATCCGGTCAg         <  2:505499/140‑1 (MQ=255)
                                                                                                                         aGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAg         <  1:855290/140‑1 (MQ=255)
                                                                                                                          gCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGTCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCa          <  5:977026/138‑1 (MQ=255)
                                                                                                                              ccccGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACt    <  7:856388/140‑1 (MQ=255)
                                                                                                                                ccGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACt    <  5:688319/138‑1 (MQ=255)
                                                                                                                                ccGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACTTa  <  7:66530/140‑1 (MQ=255)
                                                                                                                                ccGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACTTa  <  4:887808/140‑1 (MQ=255)
                                                                                                                                ccGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCAAGCCAGATTAAAAAAGTCCAGACGAGCAGCAATAATCCGGTCAGCAACTTa  <  8:920495/140‑1 (MQ=255)
                                                                                                                                ccGTCTGGCGACGGGGCTGGCGCAGGAGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACt    <  6:278813/138‑1 (MQ=255)
                                                                                                                                ccGTCTGGCGACGGGGATGGCGCAGGATCAATAAAAGCAACAGCGCCATCAGCGGCAACATCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACTTa  <  3:40673/140‑1 (MQ=255)
                                                                                                                                  gTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACTTa  <  5:37301/138‑1 (MQ=255)
                                                                                                                                  gTCTGGCGACGGGGCGGGCGCAGGCGCAATAAAAGCAACCGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCACACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACTTa  <  5:1488/138‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                        
CGCCAGCATGACTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCGCAGGCGCAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACTTA  >  NZ_CP022686/4605448‑4605715

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A