Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F2 I0 R1
|
252 |
7301.5 |
9636800 |
98.5% |
9492248 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,605,579 |
T→G |
16.8% |
T56P (ACG→CCG) |
CIW80_RS23010 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,605,579 | 0 | T | G | 16.8%
| 176.8
/ 5.1
| 111 | T56P (ACG→CCG) | CIW80_RS23010 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (3/86); new base G (16/6); total (19/92) |
| Fisher's exact test for biased strand distribution p-value = 7.36e-12 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 112 total aligned reads displayed.
CCGCCAGCATGACTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACTTA > NZ_CP022686/4605447‑4605715
|
ccGCCAGCATGACTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGc < 2:423056/138‑1 (MQ=255)
ccGCCAGCATGACTGCGTTAACCACAACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGa < 6:1077726/140‑1 (MQ=255)
ccGCCAGCATGACTCCGTTAACCACAACCGGCTAAACCATCAGTAACATGTACGTGTTCAACAGAAACCTGGAGACACACAATACAAAGCCCACCACAGCAACGATTTTTGTGACGACCTGGCGCGGCCCCGTCTGGCGa < 4:5182/140‑1 (MQ=255)
cGCCAGCATGACTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACACCACCAACGTTTTTTGAGACGACCTGGAGCGGCCCCGTCTGGCGAc < 8:620426/140‑1 (MQ=255)
cGCCAGCATGACTGCGTTAACCACAACCGGGTAAAACACCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGAc < 7:423621/140‑1 (MQ=255)
ccAGCATGACTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCcgccggcgccgg > 5:77861/1‑140 (MQ=255)
aGCATGACTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACgg < 1:149937/138‑1 (MQ=255)
cATGACAGCGTTAACCACTACCGGGTAACACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGAGTTTTGTGACGACCTGGAGCGGCCCCGGCTGGCGACGGGGCt < 6:807950/140‑1 (MQ=255)
gCGTTAACCTCTCCCGCGTACACCCGGAGTAACTCGAACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCACCAACAGCCACGGTTTTTGTGACGACCTGGAGCGGCCCCGTGTGGCGACGGGGCTggcg‑c < 1:140985/138‑1 (MQ=255)
gCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCTGGGGCCGGGGCGggcg‑ccc > 3:255750/1‑138 (MQ=255)
gTTAACCACTACCGGGTAAAACCGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACCACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTggcg‑caggc < 8:1011005/140‑1 (MQ=255)
ttAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGGCGGGCGCCGGGGCTgggg‑ccgg > 2:1169986/1‑138 (MQ=255)
aaCCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTggcg‑caggcg‑ca < 8:483782/140‑1 (MQ=255)
aaCCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTggcg‑caggcg < 2:1123959/138‑1 (MQ=255)
ccACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAAt < 8:579517/140‑1 (MQ=255)
tACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCTGGCGCCCGGGCGGGCG‑CCGGCG‑CCATaaaa > 5:762159/1‑140 (MQ=255)
tACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCGGGGGGCGGGGCGTGCG‑CCCGCG‑CCaaaaaa > 5:292600/1‑140 (MQ=255)
ggTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCTTGGGCACGGGCTGGCGCCGGGCG‑CAATaaaacaac > 3:488974/1‑136 (MQ=255)
ggTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCTGGCGGCGGGGGGGGGG‑CCGGGG‑GAATaaaacaaac > 4:146313/1‑135 (MQ=255)
ggTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCTGGCGGCCGGGCGGGGG‑CCCGCGCCAATAAAACCac > 8:542330/1‑139 (MQ=255)
ggTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCGGGCGCACGGGCTGGCG‑CACGCG‑CAAAAAAAGCAAc > 8:1105298/1‑140 (MQ=255)
gTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACTGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACa < 7:835089/140‑1 (MQ=255)
tAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCTGGGGCCCCGGGGGTGGGG‑CCGGCG‑CAAAAAAAACaaa > 2:649632/1‑137 (MQ=255)
aaaCAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAgcg < 4:457937/140‑1 (MQ=255)
agTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGTAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAg < 8:712530/140‑1 (MQ=255)
agTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATCCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCGGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATc < 1:702738/138‑1 (MQ=255)
agTAACTGCAACGATATCAACATAAAACTGGAGACACACAATACAATGCCCACTACAGCAACGATTTTTGTGACGCCCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAg < 8:733468/140‑1 (MQ=255)
gtGGTACGTTTTAAACAGAAAACTGGAGACAAACAATACATTGCCCTCACCAGCAACTATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCa < 5:48166/139‑1 (MQ=255)
cttgTACGTTTTCAACAGAAAACTGGAGACACAAAATACAATGCCCACCACAGCAACGATTTTTGTGACTACCGGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCa < 6:43840/137‑1 (MQ=255)
cTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CTGGCG‑CAATAAAAGCAACAGCGCCATCAGCgg < 2:446460/138‑1 (MQ=255)
cTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCgg < 2:1033730/138‑1 (MQ=255)
cTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCa < 7:335650/140‑1 (MQ=255)
aagTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACa < 2:95032/136‑1 (MQ=255)
aCGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACa < 2:23557/138‑1 (MQ=255)
aCGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGc < 5:320463/140‑1 (MQ=255)
cGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAg < 2:181663/138‑1 (MQ=255)
cGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAg < 2:217511/138‑1 (MQ=255)
cGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGcc < 7:1097463/140‑1 (MQ=255)
cGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCGGGGGGCCGGGGGGGGG‑CCGGCG‑CCAAAAAAACAACACCGCCCGCAGCCGCCAcca > 2:585734/1‑136 (MQ=255)
tttCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGt < 3:551009/140‑1 (MQ=255)
tttCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGGCTGGGGGCGGGGCATGCG‑CAGTCGCCAATAAAAG‑AACCGCGGCCTCACCGGCAAccacccag > 8:1139993/1‑133 (MQ=255)
tttCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGGGGGCGGCGGGGGGGGGG‑CAGGGG‑CAATTAAAGCACCAGCCCCCAAAACGGCAACCGCCAGt > 4:488382/1‑140 (MQ=255)
ttCAACAGAAAACTGTTCACACACAATACCATGCCCCCAACAGCATCGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAAGAGCGCCATCAGCGGCAACTGCCAGTg < 7:676410/140‑1 (MQ=255)
ttCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAg < 2:99517/138‑1 (MQ=255)
cAACAGAAAACTGGAGACACACAATACAATGCCCACCACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCa < 7:778985/140‑1 (MQ=255)
cAACAGAAAACTGGAGACACACAATACAATGCCCACACCAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAACAGCAACAGTGCCATCAGCGGCAACAGCCAGTGCa < 3:965421/140‑1 (MQ=255)
cAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTg < 1:895032/138‑1 (MQ=255)
cAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCa < 5:383798/140‑1 (MQ=255)
cAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCa < 5:151119/140‑1 (MQ=255)
cAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCa < 5:1041352/140‑1 (MQ=255)
cAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGGGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCa < 6:1046908/140‑1 (MQ=255)
aCAGAAAACTGGAGACACACAATACAATGCCCACACCAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAgg < 3:169816/140‑1 (MQ=255)
aCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCa < 1:1116734/138‑1 (MQ=255)
aCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCa < 2:434690/138‑1 (MQ=255)
aCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCa < 1:879108/138‑1 (MQ=255)
aCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAgg < 3:283376/140‑1 (MQ=255)
aCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAgg < 6:951836/140‑1 (MQ=255)
aCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAgg < 8:1024787/140‑1 (MQ=255)
aCAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGGCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAgg < 5:1079162/140‑1 (MQ=255)
cAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGGCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGc < 3:218357/140‑1 (MQ=255)
aaaCTGGAGACACACAATACAATGCCCACAACAGCAACGCTTTTTGTGACGCCCTGGAGCGGCCCCGGCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGtt < 7:573983/140‑1 (MQ=255)
aaaCTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGGCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGtt < 4:1023872/140‑1 (MQ=255)
aaCTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGt < 1:642573/138‑1 (MQ=255)
aaCTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGt < 2:826743/138‑1 (MQ=255)
aaCTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCGGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGt < 1:930674/138‑1 (MQ=255)
aaCTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCGGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGt < 2:411226/138‑1 (MQ=255)
gatacacacAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGc < 1:538755/135‑1 (MQ=255)
gagaCACCCAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCAc < 8:1045221/140‑1 (MQ=255)
gagaCACACAATACAATGCCCACAACCCCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCGGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCAc < 6:634155/140‑1 (MQ=255)
gagaCACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGc < 2:234674/138‑1 (MQ=255)
gagaCACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCAc < 4:723130/140‑1 (MQ=255)
atacactGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGc < 4:215820/140‑1 (MQ=255)
atacaatGCCCACCACATCAACGATTTTTGTGACGACCTGGAGCGGACCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGTCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGc < 6:418330/140‑1 (MQ=255)
atacaatGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTa < 1:585734/138‑1 (MQ=255)
atacaatGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTa < 2:856162/138‑1 (MQ=255)
gCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGCAGGCGCCGGGGCTTGCG‑CCCGCG‑CAATAAAAACAACCGCGCCCACAGCCGCAACACCCCTAGCAGGCTGTTTTGCACCCAACCAAGCCAGATTa > 8:386022/1‑140 (MQ=255)
gCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGAGGGGGGCGGGGCGGGGG‑CCGGCG‑CAATAAAAGCAACAACGCCCAAAGCCGCAACAACCACGGCAGGCGGTTTTTGACCAAACCAACCCAGATTa > 4:122065/1‑140 (MQ=255)
ccACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCTGGTGGGACCGGGCTGGGG‑CCGGCG‑CAATAAAATCCACACCGCCCAAAGCGGCAACAGCCCGTTGAGGCGGTTTTGGAGCCACACTAGCCCGAATaaa > 6:279718/1‑140 (MQ=255)
cacaACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTaaaa < 5:245967/140‑1 (MQ=255)
cacaACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTaaaa < 4:975388/140‑1 (MQ=255)
acaacaGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGGAGGCGACGGGGGTGGCG‑CAGGCG‑CAAAAAAAACAACAACGCCATACACGGCCACAACCCAGGCAGGCGGTGATGGACCCAACCAAGCACCATTaaaaa > 8:551944/1‑140 (MQ=255)
acaacaGCAACGATTTTTGTGACGACCTGGAGCGGCCCCCGAGGGGGCCGGGGCTGGCG‑CAGGCC‑GAAAAAAAAAAACAGCCCCCAAACACGCAAAAAACACTGCAGGCGGTTATTGACCAAACCAAAACAGAATaaaaa > 4:1030769/1‑140 (MQ=255)
aaCGTTTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGAGGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGa < 3:46652/140‑1 (MQ=255)
ttttttGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGag < 4:237006/139‑1 (MQ=255)
aTTTTTGTGCCGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCATGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGag < 3:916557/140‑1 (MQ=255)
aTTTTTGTGACGCCCTGGAGCGGCCCCGTCTGGCGTCGGGGCTGGCG‑CAGGCG‑CAATAATAGTAACAGCGACATCAGCGGAAACAGCCAGTGCATGCTGTTATGCACCAAACCTAGCGAGATTAAAAAAGGCCAGACg < 2:164155/138‑1 (MQ=255)
aTTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACg < 2:898580/138‑1 (MQ=255)
aTTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGag < 4:259774/140‑1 (MQ=255)
aTTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGag < 7:5501/140‑1 (MQ=255)
aTTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGag < 5:15629/140‑1 (MQ=255)
aTTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGag < 3:881846/140‑1 (MQ=255)
aTTTTTGTGACGACCGGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGag < 7:749121/140‑1 (MQ=255)
aTTTTTGTGACGACCCTGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTTTTCACCAAACCTAGCCAGATTAAAAAAGGCCAGACg < 1:623019/138‑1 (MQ=255)
tttttGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGa < 1:914948/138‑1 (MQ=255)
cgacCTGGTGCGGCCCCGTCTGGCGACGGGGCTGGCG‑GAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCaataat < 4:1068057/140‑1 (MQ=255)
gacCTGGAGCGGCCCCGTCTGGCGACTGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATc < 4:503045/140‑1 (MQ=255)
ggAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTc < 5:665923/140‑1 (MQ=255)
ccGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACt < 1:174813/138‑1 (MQ=255)
ccGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACTTa < 7:377105/140‑1 (MQ=255)
ccGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACTTa < 4:846791/140‑1 (MQ=255)
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CCGCCAGCATGACTGCGTTAACCACTACCGGGTAAAACAGCAGTAACTGGTACGTTTTCAACAGAAAACTGGAGACACACAATACAATGCCCACAACAGCAACGATTTTTGTGACGACCTGGAGCGGCCCCGTCTGGCGACGGGGCTGGCG‑CAGGCG‑CAATAAAAGCAACAGCGCCATCAGCGGCAACAGCCAGTGCAGGCTGTTATGCACCAAACCTAGCCAGATTAAAAAAGGCCAGACGAGCAGCAATAATCCGGTCAGCAACTTA > NZ_CP022686/4605447‑4605715
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
