Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F35 I0 R1
|
195 |
10216.4 |
8585726 |
98.3% |
8439768 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,049,094 |
G→T |
15.2% |
T254T (ACC→ACA) |
deaD ← |
ATP‑dependent RNA helicase DeaD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,049,094 | 0 | G | T | 15.2%
| 433.5
/ 16.1
| 202 | T254T (ACC→ACA) | deaD | ATP‑dependent RNA helicase DeaD |
| Reads supporting (aligned to +/- strand): ref base G (20/144); new base T (34/4); total (54/148) |
| Fisher's exact test for biased strand distribution p-value = 3.36e-20 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 209 total aligned reads displayed.
AATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGAATGCGCA > NZ_CP022686/2048956‑2049233
|
aaTCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTgg > 4:937183/1‑140 (MQ=255)
tctggATGTCCAGACGACCATCTTGCAGGCGTTCCTGTGTCTGCTCACGGATGGCCTGGTTCATGTCACCGTTGAGCGCGGCGCTGTTGTAGCCGTTACGCTGAAGAGCTTCTGCCAGTTCCAGAGTCGC‑GT‑TTTTgg < 6:972375/135‑1 (MQ=255)
tCAGGATGTCCAGCAGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCTCTGCGCTGTTGTAGCAGTTACGCTCAAGAGATTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTa < 3:801352/140‑1 (MQ=255)
tCAGGATGTCCAGACGACCATCTTTCAGGCGTTCGAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTGCAGCGCGGCGCTGGTGTAGCCGTTTCGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTa < 8:582071/140‑1 (MQ=255)
tCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTgg < 5:387879/138‑1 (MQ=255)
tCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTa < 8:25230/140‑1 (MQ=255)
gATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTacgaa < 1:579395/140‑1 (MQ=255)
tCCAGACGCCCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTTGTTcggacgaa > 2:962368/1‑140 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTTGTacgaaccca > 3:859470/1‑137 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTGTTAcgaacgaa > 3:849701/1‑140 (MQ=255)
cAGACGAACATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCAGTTACGCTCAAGAGCTTCTGCCACTACCAGAGTCGC‑GG‑TTTTTGTacgaacgag > 6:1044705/1‑137 (MQ=255)
aTCTTTGAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGGCCCCGTGCAGCGCGGCGCTGTTGTAGCCGTTACGCGCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATcgccg < 2:608085/140‑1 (MQ=255)
gCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGA‑GT‑TGTTGGTGAGACAGCAGATAATAGCCGCagacaaaa > 4:466328/1‑133 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCATAGTCGC‑GT‑TTTTTGTTCGAACGACTATAATCGACGCATCAAAAtaat > 4:32206/1‑137 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGG‑TTTTGGTA‑TAAGGAAGAAAATAGCCGCAACaaaaaatt > 3:361012/1‑136 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTTGTTCCCAAGAAGAAAATAGCCGGAACAAAAtaat > 2:201601/1‑137 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCtt < 1:972346/140‑1 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTTGTACGAACGAAGATAAAAGCCGCATCaaaaaatt > 3:275804/1‑136 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTc < 1:721606/140‑1 (MQ=255)
cAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCTC‑GTGTTTTGGT‑CGCACGAAGATAATCGGCCCCTCAAAATCTTc > 5:250667/1‑138 (MQ=255)
cAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGT‑TTTTGTTAGAGACAAAAAT‑ATCGCCCCATCaaaaaattacc > 4:677369/1‑133 (MQ=255)
cAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCg < 1:1054492/140‑1 (MQ=255)
cAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCg < 8:185271/140‑1 (MQ=255)
aGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTcc < 6:241371/138‑1 (MQ=255)
cTGCTCACGCAGCGCCTGGTTCATGTCACCCTTAAGCGCGGCTCTGTTTTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGTTACGAACGAATATAATATACGCATCAAAATCTTcctcgtgac < 4:609664/140‑8 (MQ=255)
cTGCTCACGCAGCGCATGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTc < 6:958101/138‑1 (MQ=255)
gCTCAGGCAGCGCCTGGGTCTTGTCACCGGTCAGCGCGGCGCGGTTGAAGCCGTTACGCGCAAGAGGTTCTGCCACTTCCAGAGGCGC‑GT‑TTTTGGTACGAACGAAGCTAATCGCCGCAGCAAAATCTTCCGCTTCCa < 6:101751/138‑1 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAgg < 7:669004/140‑1 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTTGTACGCACGCAGATAATCGCCGCAACAAAATATTACGCTTCCAgg > 4:1002374/1‑140 (MQ=255)
cTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTTGTTCGTACCGAGATAATCGCCGCCTGAAAAAGTTACGCGTCCAg > 6:841576/1‑138 (MQ=255)
tCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAgg < 5:522146/138‑1 (MQ=255)
cACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGaaa < 8:471185/140‑1 (MQ=255)
cACGCAGAGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGGTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCATGaaa < 8:851559/140‑1 (MQ=255)
cGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGG‑TTTTGGTA‑GAACGCAGATAATAGCCGCAGCAAAATCTTACGCGTACAGGAAAcc > 4:288573/1‑139 (MQ=255)
cGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTTGTACGAACGAAGATAATAGCCGCATCAAAATCTTACGCATCCCGGAAAC‑g > 2:123088/1‑140 (MQ=255)
gCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑GTTTTGTTAGACAGAAAATAAAAGCCGCCTAAAAAAATTGAGCATACAGGAAAccc > 7:724960/1‑138 (MQ=255)
gcgcCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTGGTTCGCACGCAGATAATCGACGAATCAAAATAATCAGCATCCAGGaacacgaca > 7:690865/1‑133 (MQ=255)
ccTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTTTTGAGTACAAATATAATAGCCACCTCAAAAACATACCCATCCACGAAAC‑CTaaaaat > 3:738887/1‑135 (MQ=255)
ggTTCATGTCACCGTTCAGCGCGGCTGTGGTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTg < 6:553157/138‑1 (MQ=255)
aTGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCTCTTCCAGAGTCGC‑GG‑TTTTTGTTCGAACGAAGATAATAGCCCCATAAAAATCTTACGCTTCCAAGAAAC‑CTACCAATGCTTCGtt > 4:1076652/1‑140 (MQ=255)
gTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTTGTAGCAAACAAGTGAATAGCCGCATAAAAATCTACAGCATCCCGCTAAA‑GTAACACTGCTACGtt > 6:773634/1‑138 (MQ=255)
tCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGttt < 5:674340/138‑1 (MQ=255)
ccGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACg < 7:116029/140‑1 (MQ=255)
cgatCAGAGCGGAGCTGTTGTAGCAGATAAGCTGAAGATCTTCTGCCAATTACAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCTCCGAATCAAAATCTTCCGCTTCTAGGAAAC‑GTAACAGTGCTTCGTTTTTACGc < 2:1105190/137‑1 (MQ=255)
cGTTGAGCGCGGCGCTGTTGTAGCCGTTACGCTCTAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 7:522010/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTTTAGCCGTTACGCTCAAGAGATTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACTAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 1:648088/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 7:331180/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 7:192956/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 7:824854/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 8:315219/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 3:710722/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 4:941791/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 3:191854/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 1:1089585/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 4:557874/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 2:791202/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGGTACGCTCAAGCGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGc < 7:753500/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCAGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTAc < 6:881608/138‑1 (MQ=255)
cgcgcGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATAcc < 4:555413/139‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCTGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 7:325626/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTTGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCa < 6:45487/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGATGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 2:55953/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCTCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 7:407227/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCa < 5:321090/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCa < 5:306022/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 1:858571/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 1:413774/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 3:378168/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 8:1000310/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 1:642897/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 1:235478/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTAGC‑GG‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 3:576109/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGACACTTCCAGATTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 8:642401/140‑1 (MQ=255)
gcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTTCCAGTGCTTCGTTTTTACGCATACCCCAGACAg < 3:147523/140‑1 (MQ=255)
gcTGTTGTAGCCGTTACGCACAAGAGCTTCTGCCACTTCCATAGTCGC‑GT‑TTTTGGTACGAACTAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGAc < 5:733192/138‑1 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAg < 3:1026705/140‑1 (MQ=255)
ccGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACTAAGATAATCGCCGCATCAAAATCTTCAGCTTCGAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTg < 5:1006097/137‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTTGTACGAACGAAGCAAATCGCCGCCTCAAAATCTTCCGCGTCCAGGCAAC‑CTACCAGGGCTTCGTTTTTACGCATACCCCAGACAGTCCGATAGCTGTgg > 6:430602/1‑138 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 4:516764/140‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 1:949359/140‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTTGTTAGAAGGAAGATAATCGACGCATAAAAATCGTCCGCGTGCAGGAAAC‑GGACCAGGGCTTCGTTTTTACGCAGACCCCAGACCGTCCAGGAgggaggg > 6:537414/1‑132 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GG‑TTTTGGTTCGGACGCAGATTATCGCCGCCTCAAAATGTTGCGCGGGCAGGGAAC‑GGCCCAGTGCTTGGGTTTTTCGCATACCCCACCCAGTGCACGAGCTGTgg > 6:350854/1‑138 (MQ=255)
cGCTCAAGAGCTTCTGCCAAATCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 7:1007703/140‑1 (MQ=255)
aaGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTTGTACGAAAGAAGATAATATCCGCATAAAAAAATAGCGCATACCGGCAACGGTACAGGTGGTT‑GTTGTTACGCATACCCCAGACAGTCCAGGAAGTCTGGGTgcggg > 2:267006/1‑136 (MQ=255)
gCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGCACGCAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCa < 6:751115/138‑1 (MQ=255)
cTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGa < 1:385714/140‑1 (MQ=255)
gCCACTTCCAGAGTCGC‑GG‑TTTTGGTACGAAACAAGATAAAAGCCCCATCAAAAAATAACGCATCCAGGAAAC‑GAAACACTGCTTAGGTTTTAAGCAAACCCCACACCCTACAGAAACTCAGGCTCCTGTGAGGACCGGt > 4:746334/1‑140 (MQ=255)
cACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATCATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCGCTGGCTGATGTCAGGACGGGTAg < 4:1032815/140‑1 (MQ=255)
cACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGt < 5:871482/138‑1 (MQ=255)
cACTTCCAGAGTCGC‑GT‑TTTTGGTAAGAACGACGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGt < 6:283907/138‑1 (MQ=255)
ccAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACg < 3:1064055/140‑1 (MQ=255)
tCGC‑GT‑TTTTGGTACGAACGATGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAc < 7:846323/140‑1 (MQ=255)
tCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAc < 1:352114/140‑1 (MQ=255)
tCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAc < 2:62535/140‑1 (MQ=255)
tCGA‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCCTCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTgg < 5:797502/138‑1 (MQ=255)
tGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGAATgcgc < 3:1076652/140‑1 (MQ=255)
ggTCCGAACGACGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGAATGCGCa < 7:167232/140‑1 (MQ=255)
ggTACGATCGAAGATAATCGCCGCATCAACATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGCCACTCCAGTAGCTCTTGCTGCTTTACGGCAGGGTATGCACGCTGGCCTGAATgcgga > 1:1020172/1‑138 (MQ=255)
ggTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGAATGCGCa > 1:499497/1‑140 (MQ=255)
ggTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGAATGCGCa < 1:902950/140‑1 (MQ=255)
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AATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GT‑TTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAAC‑GTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGAATGCGCA > NZ_CP022686/2048956‑2049233
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
