Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F36 I0 R1
|
179 |
8076.5 |
8499890 |
98.3% |
8355391 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,049,094 |
G→T |
8.1% |
T254T (ACC→ACA) |
deaD ← |
ATP‑dependent RNA helicase DeaD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,049,094 | 0 | G | T | 8.1%
| 406.2
/ 2.8
| 173 | T254T (ACC→ACA) | deaD | ATP‑dependent RNA helicase DeaD |
| Reads supporting (aligned to +/- strand): ref base G (25/128); new base T (16/4); total (41/132) |
| Fisher's exact test for biased strand distribution p-value = 1.72e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 175 total aligned reads displayed.
ATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGAATGCGCA > NZ_CP022686/2048957‑2049233
|
aTCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCCGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGt > 6:1002599/1‑140 (MQ=255)
tCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTa < 6:676064/140‑1 (MQ=255)
gATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTTGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGACGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTacgaa < 5:214619/140‑1 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTaagaaccga > 3:608205/1‑137 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTAagaacgaa > 6:882717/1‑140 (MQ=255)
tCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTAcgaacgaa > 2:750083/1‑140 (MQ=255)
gacgacCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGGTTTGGTAggaacgaataaa > 1:496536/1‑136 (MQ=255)
cgacCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTAGTACGAAAATa > 7:235884/1‑138 (MQ=255)
tCCAGTTTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTc < 6:19171/140‑1 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTc < 3:1059155/140‑1 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTc < 2:558471/140‑1 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCCTGGTTAATGTCACCGTTCAGAGAGGAGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTc < 1:90922/140‑1 (MQ=255)
gccAGTGTCTGCTCACGCAGCGCCTGGATCATGGCACAGTTCAGCGCGGCTCTGGTGTAGCCGTTACGCTCAATAGCTTCTGCCACTTCCCGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTc < 3:191746/139‑1 (MQ=255)
ccAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGATTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTAAGCACGAAGATAATAGCCGCAGAAAAATAtt > 7:614381/1‑138 (MQ=255)
tCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGGTTTGGGTCGGACGAACGTTATAGCCGCCTCAAAATCTTACGCGTcc > 3:110388/1‑140 (MQ=255)
cTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑TTTTTTGGTAAGAACGAAGATAATCGCCGCATCAAAATCTTACGCTTCCa < 2:677781/140‑1 (MQ=255)
cTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCa < 2:869806/140‑1 (MQ=255)
gatCACGCAGCTCTTGGTTCATGTCACCGTTCTGCGCGGCGATGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTACa < 7:301212/136‑1 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTTGGAAACAAGTTAATAGGCGCCTCCAAATATTACGCttgaagg > 5:695208/1‑135 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAgg < 3:962719/140‑1 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAgg < 1:156780/140‑1 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTCGAACGAAGATAATAACCGCATCAAAATATTACGCGTCCaag > 2:1024579/1‑138 (MQ=255)
tCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGGACGCACGAAAATAATCGCCGCATAAAAATCTTACGCGTACAggga > 6:499647/1‑138 (MQ=255)
cACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGa < 8:820068/138‑1 (MQ=255)
cACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGaaa < 2:337541/140‑1 (MQ=255)
cGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGCGCTTCTGCCACTTCCAGAGGCGC‑GGGTTTTGGACGGACGCAGATTATAGGCGCCGACAAAAATTCCGCTTGCAgggagcg > 3:434915/1‑135 (MQ=255)
gTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCtt < 4:943688/140‑1 (MQ=255)
gTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTTAGAACCAAGATAATAGCCGCATCAAAATCTTACGCTTCCAGGAAACCTACCACTGcgt > 1:322129/1‑138 (MQ=255)
gTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGTTAC‑CACGCATAAAATCTCCGGCACAAAAACATCAGCTTCCAGGAAAAGTACCAGTGCTTGGtgtt > 2:36410/1‑140 (MQ=255)
gTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTa < 2:569281/76‑1 (MQ=255)
cACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTGTTTGGTAACAACCAAAATAAAATCCGCATCAAAAACTTACGCGTCCAGGAAACATACCACTGAATCGtttt > 7:769862/1‑138 (MQ=255)
ccGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACg < 1:472745/140‑1 (MQ=255)
cggtCAGCGCGGCGGCGTTGGAGCCGTTACGCTCAAGAGCTTCTGCCCCTTCCAGAGTCGC‑GGTTTTGGTACGAACGAAGAAAAACGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTAc < 7:959822/135‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTAc < 7:491700/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTAc < 7:45412/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:891058/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 5:168955/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 6:449245/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:710710/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:356169/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 2:499036/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 2:311643/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 2:884478/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGAACGAACGAAGATTATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 6:798551/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGGTGTAGCCGTTACGCTCAAGAGCTGCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTAc < 8:441526/138‑1 (MQ=255)
cGTTCAGCGCGGCGCGGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:988172/140‑1 (MQ=255)
cGTTAAGCGCGGCGCTGTTGTAGCCGTTACGCTCAATAGCTTCTGCCACTTCCAGACGCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGATTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 3:563045/140‑1 (MQ=255)
gTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTTCCACTTCCAGAGTCTC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACg < 7:387763/138‑1 (MQ=255)
gTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCa < 3:736681/140‑1 (MQ=255)
gTTCAGCGCGGCGCTGTTGTAGCCGTTACCCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCa < 6:756120/140‑1 (MQ=255)
gcggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCGAGAGTCGC‑GGTTTTGGTACGAACGAAGATAATCGCCGCATCAAATTCTTCCGCTTCCAGGAAACGTACGAGTGCTTCGTTTTTACGCATACCCCa < 5:88761/140‑1 (MQ=255)
gcggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCa < 6:443757/140‑1 (MQ=255)
gcggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCa < 5:1001153/140‑1 (MQ=255)
cggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGGTTTTGTACGAACGCAGATAAAAGCCCCAGAAAAATATTCCGCATCAAGGAAACCGAACACAGCGTGGGTTTTAAGCAGAcccccc > 6:1004631/1‑138 (MQ=255)
cggcgCTGATGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAAAGAAAAAAATCGACGCCACAAAAAATTCAGAGTACAGCAAACGTAACACTCCATCGTTTTTAACCAAAcccaaa > 2:712385/1‑137 (MQ=255)
ggcgCTGTTGTGGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCa < 7:167427/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCTCTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 2:136627/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 4:482063/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 1:1024579/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTACGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 5:190940/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTTCGCACGAAGATAATAGCCGCATCAAAATATTGCGCGTCCAGGACACGTACCAGGGCTTGGTTTTTAAGCCAAcccccgc > 4:241662/1‑137 (MQ=255)
ggcgCTGGTGTATCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCTGGAAACGTACCAGTGCTGCGTTTTTACGCATACCCCAGa < 2:1057284/140‑1 (MQ=255)
gcgcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGAc < 5:1004631/140‑1 (MQ=255)
cgcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTTTACGAACGAATATAATAGCCGCATCAAAATATTCAGCTTACATGAAACGTACAACTGAGTAGTTTTTAAGAATAAACCAAACa > 6:82880/1‑140 (MQ=255)
cgcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTTCGAACGCAGATAATAGCCGCCTCAAAATCTTACGCGTACAGGAAAACTACCACGGCTTCGTTTTTACGCATAccccccacc > 6:79317/1‑135 (MQ=255)
gcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGAc < 8:448823/138‑1 (MQ=255)
gcTGTGGTAGCCGTTACGCTCACGAGCGTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAg < 2:440856/140‑1 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAg < 4:331738/140‑1 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGGCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTcc < 7:897984/138‑1 (MQ=255)
ggtAGCCGTTACGCTCAAGAGCTGCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAg < 1:527709/139‑1 (MQ=255)
gCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGGCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGc < 3:768052/140‑1 (MQ=255)
ccGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTTCCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGct < 4:147520/140‑1 (MQ=255)
ccGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGct < 1:388586/140‑1 (MQ=255)
ccGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGct < 2:770576/140‑1 (MQ=255)
tACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTGTTTGGTTAGACCGAAGATAAAAGCCCCCTCAAAATCTTCCGCGTCCCGGAAACCTACCAGTTGGTGGTGTTTTCTCACACCCCACCCAGGACAGTAGccaggg > 6:492327/1‑135 (MQ=255)
tACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTTGGTACCAAAAAAAAATCCGCCACAAAAACATGACCGTCCAGGAAAAGTACCAGTGCTTAGGTTTTTAACAAACACCACACAGACCACTAggatggg > 2:1100332/1‑134 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAATCGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 1:379439/140‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 5:769707/140‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 4:74987/140‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTTCGAACGAAGATAATAGCCGCATCAAAATCTTACGCTTCCAGGAAACGTTCCAGTGCTTCGTTTTTAAGCATACCCCAGCCAGTACAGGATCTGTgg > 8:911129/1‑138 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGGGTTGGGGCGAACGAAGATAAACGCCGCCGCAAAAACTTACGCGTCCAGGAAACCGACCAGGGCTGAGGTTTTTAGCCTCCCCCCGACCGGCCAGTAGcggggg > 8:861630/1‑133 (MQ=255)
aaGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGAt < 8:53695/138‑1 (MQ=255)
aaGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGt < 4:829030/140‑1 (MQ=255)
agCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAg < 4:384605/140‑1 (MQ=255)
gCTTATGCGACTTCCCGTCTCGC‑GTTTTTGTTAGGAACGACGATAATAGCCGCATCAAAATCTTCCGCGTCCAGGAACCGTACCAGTGCTTCGTTTTTACGCATACCCCCGACAGTCCAGTAGCTCTGGCTGATGGCAgg < 1:638083/140‑1 (MQ=255)
cTTCTCCCACTTCCAGAGTCGC‑GTTTTTGGTACTAACGCAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGa < 5:441504/140‑1 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGt < 7:134495/138‑1 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGt < 8:440322/138‑1 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGt < 7:698362/138‑1 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAg < 5:580331/140‑1 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAg < 3:711465/140‑1 (MQ=255)
ccatcgTCGC‑GTTTTTGGTAAGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTTCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCGCTGGCTGATGTCAGGACGGGTAGTCACg < 6:274609/135‑1 (MQ=255)
ccAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACg < 6:1028655/140‑1 (MQ=255)
ccAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACg < 6:117312/140‑1 (MQ=255)
tCGC‑GTTTTTGGTACGAACGAAGTTAATAGCAGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTATTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTgg < 8:819524/138‑1 (MQ=255)
gcgc‑gTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTggtc < 1:815714/139‑3 (MQ=255)
c‑gTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGa < 1:144534/140‑1 (MQ=255)
ttttGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGAATg < 1:715304/140‑1 (MQ=255)
ttGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGAATgcg < 2:201241/140‑1 (MQ=255)
ttGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGAATgcg < 1:440378/140‑1 (MQ=255)
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ATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGAATGCGCA > NZ_CP022686/2048957‑2049233
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
