Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F35 I0 R1
|
157 |
6985.9 |
8006972 |
98.3% |
7870853 |
134.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,479,619 |
T→A |
12.3% |
intergenic (‑28/+165) |
ftsB ← / ← ygbE |
cell division protein FtsB/DUF3561 family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,479,619 | 0 | T | A | 12.3%
| 412.4
/ 5.1
| 174 | intergenic (‑28/+165) | ftsB/ygbE | cell division protein FtsB/DUF3561 family protein |
| Reads supporting (aligned to +/- strand): ref base T (100/46); new base A (2/17); total (102/72) |
| Fisher's exact test for biased strand distribution p-value = 1.45e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 174 total aligned reads displayed.
CCACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGATT > NZ_CP022686/1479483‑1479751
|
ccACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATc < 2:242014/138‑1 (MQ=255)
catcatTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTATCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATATTCATCCCA‑Tg < 8:294501/140‑1 (MQ=255)
catcatTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCa < 3:131535/138‑1 (MQ=255)
catcatTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCa < 2:670058/138‑1 (MQ=255)
catcatTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑Tg < 8:242521/140‑1 (MQ=255)
catcatTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGACAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCa < 4:382124/138‑1 (MQ=255)
atcatTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCAATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑t > 5:652975/1‑138 (MQ=255)
gAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAgacga > 2:189794/1‑138 (MQ=255)
aGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAgacgac > 5:586515/1‑138 (MQ=255)
tataGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGActc > 1:138192/1‑138 (MQ=255)
tataGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGActc > 3:454021/1‑138 (MQ=255)
aataGTCATGTATACCGTTCTTACCGAACCACAGCTAATACTGTAGCCAGACCAGAATACACAGCAACAGCAGCGTTAGTTTACCAATCCTGCCACCTGAAAAACGGCATCTTCATACCA‑TGCATCCGAAGACCActc > 1:106272/2‑138 (MQ=255)
cATGTATACCGTTCTTACCGAACCACAGCGAAAACTGTAGCCAGACCAGAATAGCCAGCAACAGCCGCGTTAGTTAACCCATCCTGCCCCCTGAAAACCGGCATATTCATCCCA‑TGCTTCCGACGACGACTCTACATc < 4:563380/138‑1 (MQ=255)
gTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCctc > 6:930236/1‑138 (MQ=255)
gTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCctc > 2:867963/1‑138 (MQ=255)
gTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCctc > 5:195211/1‑138 (MQ=255)
gTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTg > 8:129779/1‑140 (MQ=255)
gTATACCGTTCTTACCGAACAACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGAATCCGACGACGCCTCTACCTCCTCTg > 8:600437/1‑140 (MQ=255)
tataCCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGt > 7:54859/1‑140 (MQ=255)
ataCCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCATCTg > 6:883748/1‑138 (MQ=255)
taCCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGt > 4:489792/1‑138 (MQ=255)
taCCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGt > 6:689281/1‑138 (MQ=255)
ccGTTCTTACCGACCCACAGCGAATACTGTAGCCAGAACAGAATATCCAGCACCATCAGCGTTAGTTTACCCATCCAGCCCCCTGAAAAACGCCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACAGCCTCTGttt > 5:788775/1‑137 (MQ=255)
cGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCCACAGCAGCGTTAGTTTACCCATCATGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTgg > 1:454033/1‑138 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTTCCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTgggg > 4:761085/1‑138 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGCCTCTACATCCTCTGTTGGGGAt > 7:783068/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTgggg > 2:891739/1‑138 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTgggg > 1:841997/1‑138 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTgggg > 3:204605/1‑138 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCACA‑TGCATCCGAAGACGCCTCTACATCCTCTGTTgggg > 1:460667/1‑138 (MQ=255)
cTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAACACGGCATCTGCATCCCA‑TGCCTCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 6:82461/1‑138 (MQ=255)
cTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCTTCTTCATCCCA‑TGCATCCGAAGACGCCTCTACATCCTCTGTTGGGGAt > 1:242716/1‑138 (MQ=255)
cTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 2:575522/1‑138 (MQ=255)
cTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 2:527322/1‑138 (MQ=255)
cTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 1:747650/1‑138 (MQ=255)
cTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATAc > 8:400781/1‑140 (MQ=255)
cTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTACATCCCA‑TGCATCCGAAGACGACTCTAAATCCTATCTTGGGGAt > 5:576079/1‑138 (MQ=255)
cTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCAATCCTGCCCACTGAAAAACGGCATCTTCATCCCA‑TGCATACGAAGACGACTCTACATCCTCGGTTGGGGAt > 3:517843/1‑138 (MQ=255)
cTTACCGAACCACAGAGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTATACCCATCCAGACCCCTGAAAAACGGCATCTTCATCCCA‑AGCATCCGAAGACGACTCTACATCCGCTGTTGGGGAt > 1:292526/1‑138 (MQ=255)
tACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATAc > 1:434929/1‑138 (MQ=255)
aCCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTCCCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACTTCCTCTGTTGGGGATAcc > 3:93658/1‑138 (MQ=255)
aCCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCCTCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGCCGACTCTACATCCTCTGGTGGGGATAcc > 5:100174/1‑138 (MQ=255)
cGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACcgc > 3:17143/1‑138 (MQ=255)
aCCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGAc > 4:90118/1‑138 (MQ=255)
aCCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACaa > 7:728426/1‑140 (MQ=255)
cacaGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACaa > 3:632116/1‑138 (MQ=255)
cacaGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACaa > 5:720475/1‑138 (MQ=255)
cacaGCCAAAACTGAACCCAGACCAGAATACCCCCCAACACCAGCTTTATTTTACCCAACCTCCCCCCTAAAAAACGCCATCTTCAACCCA‑TGCACCCCACGACGACTCTACATCCTCTGTTGGGGATACCGCGACaa < 3:563505/138‑1 (MQ=255)
acaGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAAc > 3:615203/1‑138 (MQ=255)
ccaaTACTGTCCCCACCCCACAATCCCCAGCAACCCCACGTTTAGTTAACCCATCCGCCCCCCTGAAAACCGGCATCTCCATCCCA‑CTCCTCCGACGACGACGCTACAGCCTCTGTTGGGGATACCGCGACAACGCGGGc < 8:698157/138‑1 (MQ=255)
taaTACTGTAGCCACACCACAATAGCCAGCACCAGCAGCGTTAGTTTCCCCAACCTGCCCCCTTAAAACCGGCATCTACATCCCA‑TGCATCCGGAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCggg < 1:541862/137‑1 (MQ=255)
gTAGCCAGCCCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAACACGGCGTCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCGGTTGGGGATACCGCGCCAACGCGGGCAAATGTAc > 7:535453/1‑140 (MQ=255)
gTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCCTCCCA‑TGCATCCGAAGCCGACTCTACATCCTCTGTGGTGGATAACGCGACAACGCGGGCAAATGTAc > 8:388826/1‑140 (MQ=255)
agtcagaccagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTAc > 4:209235/4‑138 (MQ=255)
agacagaccagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTAc > 4:320969/4‑138 (MQ=255)
aGCCAGACCAGAATATCCAGCAACAGCAGCGTTAGTTTACCAATCCTGCCCCCTGAAAAACGGCATCTTCATACCA‑TGAATCCTAATACGACTCTACATCCACTGTTGGGGATACAGCGACACCGCGCGCAAATGTaa > 5:77398/1‑137 (MQ=255)
accagaATAGCCATCAAAAGCAGCGTTAGTTAACCCATCCTGCCCCCTGAAAAACCTCCTATTCATCCCA‑TGCATCCGAAGACTACTCTACATCAAATGTTGGTGATCCCGCGACACAGCGGGCAAATGTACAACAtatt > 7:248534/1‑137 (MQ=255)
accagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCC‑TTCATCCGAAGACGCCTCTACATACTCTGTTGGGGAGACCGCGACCACGCTGGCCAATGTACCCCATTTg > 8:481785/1‑140 (MQ=255)
ccataATAGCCAGCAACCCCCGGGTTAGTTACCCAAACCTGCCCCCTCAAAACCGGCATCTTCATCCAA‑TGCAACCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACAttt < 2:183670/138‑1 (MQ=255)
cagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTg > 1:981275/1‑138 (MQ=255)
caaTACCCAGCAACAGCAGCGTTTGTTAACCCACCGTCCCCCTTTAAAACCGGCAGCTTCATCCCA‑TGCACCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTc < 2:783142/137‑1 (MQ=255)
aaTAGCCAGCAACAGCCGCGTTAGTTTACCCATCCTGCCCCCTGAAACACGGCATCTTCAAACCA‑TGCATCCGAAGCCGCCTCTACATCCTCTGTTGGGGATACCGCGACCACGCGGGCAAATGTACCACATTTGTCGAt > 8:272142/1‑140 (MQ=255)
cgCCCGCAACCGCCGCGTTATTTTACCCAACCTGCCCGCTGAAAAACGCCATTTACATCCCA‑TGCATCCGCAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGAtt < 4:365265/137‑1 (MQ=255)
cgCCCGCAACCCCAGCGGTAGTTTACCCCTCCGGCCCCCTCAAACACGCCCTCTACAACCAA‑TGAAGCGGAAGACGACTCTACATCCTCTGTTGGTGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGAtt < 6:938551/137‑1 (MQ=255)
ccccaccaAAACCAGCGTTATTTTACCCATCCTGCCCCCTCAAAAACGCCATCTTAATCCCA‑TGCACCCTAAGACGACTCTACATCCTCTGTTGGGGATACCGCGAAAACGCGGGCAAATGTACCACATTTGTCGAtt < 4:276533/136‑1 (MQ=255)
ccccAGCACCAGCCGCGTTATTTCACCCATCCTCCCCCCTTAAACCCGCCATCTTCAACCCA‑TGCACCCTCCGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 8:757433/138‑1 (MQ=255)
ccccAGCAACCGCCGCGTTATTTTACCCATCCTCCCCCCTGAAAAACGGCATCTTCAACCCA‑TGCAGCCGACGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGAtt < 3:736323/136‑1 (MQ=255)
agcacccAACAGCAGCGTTCTTTAACCCATCCTCCCCCATAAAAAACGCCATCTACAACCCA‑TCCATCCGACCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 7:412361/134‑1 (MQ=255)
aGCCCGCAACAGCCGCGTTAGTTTACCCATCCTGCCCCCTTAAAACCGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGAtt < 4:632116/138‑1 (MQ=255)
aGCCAGACACAGCAGCGTTTGTTAACCCATCCGGCCCCCTTAAAAACGGCATCTTCATCCAA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGAtt < 2:434929/138‑1 (MQ=255)
ccAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAAGGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGTAAAATTTACCACATTTTTCGATTGTTa > 7:765394/1‑140 (MQ=255)
ccAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATATGTCGATTGTTa > 7:129500/1‑140 (MQ=255)
ctcAACAGCTGAGTTTGTTTACCCAACCGGCCCGCTTAAAAACGCCTTCTTCTTCCAA‑TTCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTa < 4:587106/136‑1 (MQ=255)
cgCAACACCCGCGTTAGTTACCCCATCATCCCCCCTCAAAAACGGCATCTTCATCCCA‑TGCCTCCGAACACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGCACCACATTTGTCGATTGTTa < 1:384777/137‑1 (MQ=255)
cccAACCGCAGAGTTAGTTACCCCAACCTCCCCCCTCAAAACCGGCATCTTCATCCCT‑TGCATCCGACCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTa < 2:677090/136‑1 (MQ=255)
cccAACAGCCCCTTTAGTTCACCCAACCTGCCCCATTAAAAACGGCATCTTCATCCAA‑TGCATCCGACCACGACTCTACATCCTCTGTTTGGGATACCTCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTa < 6:598962/136‑1 (MQ=255)
cccAACAGCAGCTTTAGTTAACCCTACCGGCCCCCTTAAAAACGCCACCTTCATCCCA‑TCCACCCGACCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTa < 4:17143/136‑1 (MQ=255)
aGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGTGATACCGCGACAACGCGGGCAAATGGACCACATTTGTCGATTGTTACg > 8:279782/1‑140 (MQ=255)
aGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGCGCAAATGTACGACATTTGTCGATTGTTa > 5:321938/1‑138 (MQ=255)
gCAACAGCAGGTTTTTTTTACCAATCCTGCCCCCTTAAAACCGGCATCTTCATCCCA‑TGCATCCTACGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATTTACCACATTTGTCGATTGTTACGt < 8:598444/140‑1 (MQ=255)
caccagcagCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGTGATACCGCGACAACGCGGGCAATTGTACCACATGTGTCGATTGTTACGta > 8:380424/4‑140 (MQ=255)
cccgcagcTTTAGTTTACCCATCCGCCCCCCTAAAAACCGGCATCTTCAACCCA‑TGCATCCCAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGta < 1:189794/135‑1 (MQ=255)
catcagcGTAAGTTTACCAAACCTCCCCCCTGAAAACCGCCATCTTCATCCCC‑AGCATCCTACCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATAc < 7:342989/137‑1 (MQ=255)
gggTTATTTAACCCATCCGGCCCCCTGAAAAACGTCAT‑ATCACACCATTGCATCCGATGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCa < 3:32117/136‑1 (MQ=255)
cctttATTTTACCGTTCCTGCCCCCTGAAAAACTGCTCATTAACCCAA‑TGCATCCGAACACGACTCTACATCCTATGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCa < 5:769855/135‑1 (MQ=255)
aGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCg > 2:95453/1‑138 (MQ=255)
aGTTTACCCATCCAGCCCCCTTAAAACCGGCACCTACATCCCA‑AGCATCCGACGACGCCTCTACATCCTCTGTTGGGGATACCGCGACAACGCTGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCg < 6:562992/138‑1 (MQ=255)
gTTTACCCAACCTCCCCCCTTAAAAACGCCATCTTCAACCCT‑TGAATCCTACGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGt < 4:706316/138‑1 (MQ=255)
ttACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATATACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGc > 6:292025/1‑138 (MQ=255)
cccATCCTGCCCCCTCAAAACCGCCATCTTCATCCCA‑TCCATCCGACGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAAc < 7:53223/140‑1 (MQ=255)
cATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGCCTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCCTgtctctt > 1:586140/1‑132 (MQ=255)
cATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCTATTGTTACGTATACCCAGGGCGTGCAGAAc > 6:845912/1‑138 (MQ=255)
ccTGCCCCATGAAAACCGGACCCTAACACCCA‑GGCCTCCGACGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATa < 3:449554/138‑1 (MQ=255)
cTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATaa > 6:72313/1‑138 (MQ=255)
tGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAAt > 4:933103/1‑138 (MQ=255)
cccccTCAACACCGGCATCTACATCCCA‑TGCCTCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAAtct < 5:194379/138‑1 (MQ=255)
cccTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTTTTGGGGATACCGCGACAACGCGTGCAAATGAACCACATTTGTCGATTGTTACGTATACCCAGGGCGTACAGAACATAATCTCa > 6:720290/1‑138 (MQ=255)
tGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCAACAACCTCTGTTGGGGATACCGAGCAACCGAGGGCAAATGTACCCCATATGTCGATTTTTACGTATACACAGGGCGTGCAGAACATAATCTCattatt > 7:597805/1‑140 (MQ=255)
ttCTTCATCCAC‑TACATCCCAATACGACTCTACATACTCTGTTGGGGATACAGAGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGGGCAGAACATAATCTCATTATTAGTTACGGAtt < 8:535453/139‑1 (MQ=255)
aTCTTCAACCCA‑TGCATCCGACCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGa < 4:651075/138‑1 (MQ=255)
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CCACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCA‑TGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGATT > NZ_CP022686/1479483‑1479751
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
