Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,479,619 |
T→A |
9.2% |
intergenic (‑28/+165) |
ftsB ← / ← ygbE |
cell division protein FtsB/DUF3561 family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,479,619 | 0 | T | A | 9.2%
| 519.9
/ 2.6
| 204 | intergenic (‑28/+165) | ftsB/ygbE | cell division protein FtsB/DUF3561 family protein |
| Reads supporting (aligned to +/- strand): ref base T (130/50); new base A (2/17); total (132/72) |
| Fisher's exact test for biased strand distribution p-value = 1.88e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 207 total aligned reads displayed.
GCCACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGATTGAATTAT > NZ_CP022686/1479482‑1479758
|
cacaTAATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGCACCACAGCGAATACTGTAGCCAGCCCAGAATAGCCAGAAACAGAAGCGTTAGTTTACCCATACTGCCCCCTGAACAACGGCATCTTCATCCCa > 7:666709/1‑140 (MQ=255)
catcatTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATg < 7:731922/140‑1 (MQ=255)
catcatTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATg < 5:700865/140‑1 (MQ=255)
catcatTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATg < 6:57505/140‑1 (MQ=255)
catcatTATTGACGCGAGTATAGTCATGTATACCGTTCTTACAGAACCACAGCGAATACTGTAGCCAGAACAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCa < 4:479798/138‑1 (MQ=255)
aattattGACGCGAGTATAGTAATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGc < 3:688957/137‑1 (MQ=255)
aCGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCACCAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATg > 7:571257/1‑129 (MQ=255)
aCGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAgac > 8:257799/1‑140 (MQ=255)
gcgAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAgacgc > 8:210789/1‑139 (MQ=255)
gcgAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAgacgc > 2:844401/1‑139 (MQ=255)
gcgAGTATAGTCATGTATACCGTTCGTACCGAACCACAGCGAATACTGTAGACAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAgacgc > 6:922237/1‑139 (MQ=255)
aGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGCCCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGActc > 6:297284/1‑140 (MQ=255)
tCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATcc > 6:87203/1‑140 (MQ=255)
aatttataCCGTTATAACCGAACAACAGCTAATACTTTAGCAAGACCATAAAAGCCAGCAACAGCAGCGTTATTTTACCCATCCTGCCCCCTTAAAAACGCCATCTTCAACCCATGCATCCCAAGACGACTCTACATCct < 6:173239/136‑1 (MQ=255)
aTGTATACCGTTCTTACCGAACCTCAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCGCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCctg > 6:604061/1‑139 (MQ=255)
aTGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCctc > 6:599490/1‑140 (MQ=255)
tGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATACATCCGAAGACGACTCTACATCctcg > 1:824791/1‑139 (MQ=255)
gTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGCCCAGAATAGCCAGCAACAGCAGCGTTAGTTTCCCCATCCTG‑CCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCGCTgg > 1:468502/1‑139 (MQ=255)
gTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTg > 5:173239/1‑140 (MQ=255)
gTATACCGTTCTTACAGAACAAAAGCGAATACTGTAGCCAGCCCAGAATAGCCAGCAACAGCAGCGTTAGTATAACCATCCTGCACCCAGAAAACCGGAAACTTAATCACATGCATCCGAAGACGACTCTACAACcta > 4:301275/1‑137 (MQ=255)
tataCCGTTCTTACCGATCCACAGCGAATACTGTAGCCAGACCAGAAAAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCAACCCATGCATCCGAAGACGACTCTACAACctctct > 1:684960/1‑138 (MQ=255)
tataCCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGACGACGACTCTACATCCTCTgg > 6:759999/1‑139 (MQ=255)
tataCCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGCCGACTCTACATCCTCTGt > 1:792135/1‑140 (MQ=255)
tataCCGTTCTTACCGAACCACAGCGAAAACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGt > 1:1012581/1‑140 (MQ=255)
ataCCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTg > 4:363426/1‑138 (MQ=255)
taCCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGTATCCGAAGACGACTCTACATCCTCTGt > 4:1003236/1‑138 (MQ=255)
cGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTgggg > 1:174293/1‑140 (MQ=255)
cGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTATGTTgggg > 5:1005825/1‑140 (MQ=255)
cGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAAAAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCAACCCAAGCATCCGAAGACGACACTACATCCACTCTTgcgg > 8:149591/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGCCCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCCTGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 8:560507/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCCGCAACAGCAGCGTTAGTTTACCCCTCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 7:980610/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTCCCCATCCTGCCCCCTGAAACACGGCATCTTCATCCAATGCATCCGAATACGACTCTACATCCTCTGTTGGGGAt > 7:82561/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGCCGACTCTACATCCTCTGTTgggg > 4:1029934/1‑138 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTgggg > 3:396111/1‑138 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTgggg > 3:844542/1‑138 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 1:393359/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 8:643220/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 7:941337/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCGACATCCTCTGTTGGGGAt > 2:766254/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTATACATCCTCTGTTGGGGAt > 6:24248/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACAAGAATAGCCAGCAACAGCAGCGTTAGTAAACCCATCATGCCCCCTGAAAAACCGCATCTACATCCCATCCATCCTAAGACGACTCTACATCCTCTCTTGGGGAt > 5:926114/1‑140 (MQ=255)
ttCTTACCGAACAACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGGTTACCCATCCTGCCCCCTGAATCACGGCATCTTCATCCCATGCGTCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 2:704598/1‑140 (MQ=255)
taattACCGAACCACAGCGAATACTGTAGCCAGCCCAGAATAGACAGAAAACGCAGCGTTAGTTTACCCCTCCTGCCCCCTGAAAAATGGCATCTTCCTCCCGTGAATCCTAAGACGCCTCGACCACCTCTGGTGGGGAt > 6:1056917/4‑140 (MQ=255)
cTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATAc > 5:81682/1‑140 (MQ=255)
cTTACCGAACAACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACTGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 4:989164/1‑138 (MQ=255)
ttACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCCTCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATAcc > 2:74789/1‑140 (MQ=255)
ttACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCACTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGCCTCTACATCCTCTGTTGGGGATAcc > 8:609661/1‑140 (MQ=255)
aCCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACcgc > 1:69364/1‑140 (MQ=255)
cGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTAGGGGATACcgc > 3:271099/1‑138 (MQ=255)
gAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGAc > 8:902436/1‑140 (MQ=255)
aCCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGGTAGTTTACCCATCCTGCCACCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGTATACCGCGACaa > 5:860824/1‑140 (MQ=255)
ccACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAAc > 1:298550/1‑140 (MQ=255)
caccGCTAATCCTGTCCCCACACCAGAATAGCCAGCACCAGCAGCGTTAGTTTACCCAACCTCCCCCCAGAAAACCGCCAGCTACATCCCATCCACCCGACGACGACTCTACATCCTCTGTTGGGGATACCGCGACaa < 4:117382/138‑1 (MQ=255)
cGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAACACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCgg > 4:1007984/1‑138 (MQ=255)
aaTCCTGTAGCCAGCCCACAAAACCCACCAACAGCTGCGTTATTCTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATCCATCCGAAGACGACCCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCaa < 2:172986/140‑1 (MQ=255)
aaTACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCACCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGATGGGGATACAGCGCCAACGCGGGCaa > 1:567282/1‑140 (MQ=255)
aaTACTGTACCCAGACCACAATACCCACCAACAGCAGCGTTAGTTAACCCATCCTGCCCCCTGAAAACCGGCATCTACACCCCCTCCAGCCGACGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCaa < 2:557845/140‑1 (MQ=255)
tGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATg > 3:356119/1‑138 (MQ=255)
tGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATACTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTa > 1:454837/1‑140 (MQ=255)
gTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTAc > 1:51559/1‑140 (MQ=255)
gTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTAc > 2:339184/1‑140 (MQ=255)
gTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTAc > 7:341331/1‑140 (MQ=255)
gCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGATTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTAcc > 4:913347/1‑138 (MQ=255)
ccagaccagaATAGCCAGCAACAGCAGCGTTAGGTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGCCGACTCTACATCCTCTGTTGGGGATACCGCGCCAACGCGGGCAAATGTACcaca > 5:294454/1‑140 (MQ=255)
accagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGCCGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACAtttt > 1:999481/1‑139 (MQ=255)
accagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGCCGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACAACATTTg > 6:354799/1‑140 (MQ=255)
cagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTg > 3:463366/1‑138 (MQ=255)
aaacccaccaACACCAGCGTTAGTTTACCCATCCTGCCCCCTCAAAACCGCCATCTTCATCCCATCCATCCGAACACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGa < 4:524953/134‑1 (MQ=255)
aTACCCACCCACCGCAGCGTTAGTTAACCCATCGTGCCCCATTAAAACCGCCATCTACATCCAATGCATCCGACGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGa < 4:694408/138‑1 (MQ=255)
cgCCAGCATCCGCACCGTTTCTTAACCCACCCCGCCCCCTCAAAAACGGCATCTCCATCCCTGGCATCCTACCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 6:1082623/139‑1 (MQ=255)
cgCCAGCAACCTCAGAGTTATTAAACCCAACCTGCCCCCTTAAAAACGGAATCTTCATCCAATCCAACCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 7:481990/139‑1 (MQ=255)
ccccaccaACAGCCTCTTAATTTTACCCATCCTCCCCCCTCAAAACCGCCATCTTCATCCCATGCATCCCACGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 8:1007350/138‑1 (MQ=255)
acccaccaACAGCATCGTTAGTTTACCCATCCTGCCCCATTAAAAACGCCATCTTCAACCCATGCATCCCAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 8:810444/138‑1 (MQ=255)
acccAGCAACAGCAGCGTTTTTTAACCCATCCGCCCCCCTCAAAACCGGCATCTTCAACCCATGCACCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGAtt < 3:1029934/136‑1 (MQ=255)
aGCCAGCAACAGCAGCGTTAGTTAACCCATCCTCCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 2:915165/140‑1 (MQ=255)
ccAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAACACGGCATCTTCATCCCATGCAGCCGAAGACGCCTCTACATCCGCTGTTGGGGATACCGCGACAACGCGGGCAATTGTACCACATTTGTCGATTGttt > 5:636473/1‑139 (MQ=255)
ccAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTa > 6:752035/1‑140 (MQ=255)
ctcAACAGCTGCTTTATTTTACCCATCCGGCCCCCTCAAAAAGGGAATCTTCATCCCATGAATCCTACCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTa < 3:962462/136‑1 (MQ=255)
cgCAACAGCCGGTTTCTTTTACCCATCCTGCCCCCTTAAAAACGGCATCTTCAACCCATCCATCCTCCGACGACTCTACATCCTCTTTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACg < 8:891152/139‑1 (MQ=255)
cccAACAGCAGCGTTAGTTTACCCATCCTGCCCCATGAAAACCGTCATCTTCATCCCTTGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACg < 6:498583/138‑1 (MQ=255)
acaaaCTGCAGCTTTAGTTTACCCATCCTGCCCCCTAAACACCGCCACTTTCATCCCACGAATGCGATCACGCCTCTACATCCTCTGTTGGGTATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACg < 7:146963/137‑1 (MQ=255)
aGCACCAGCAGCTTTATTTAACCCATCCCGCCCCCTCAAAACCGGCATCTTCATCCCATGCCGCCCACCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACg < 8:415015/140‑1 (MQ=255)
aGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTa > 3:645914/1‑138 (MQ=255)
cagcGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACACCGCGGGCAAATGTACCACATTTGTCGATTGTTACGtatctgta > 5:156787/1‑135 (MQ=255)
gggtttttttACCCATCCTCCCCCCTTAAAAACGGCTTTTTCATCCCATTCCTCCTAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAgg < 7:1039828/133‑1 (MQ=255)
gTTAGTTTCCCCAACCTGCCCCCTTAAAAACGGAATCTTAATCATATGAAACAGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGc < 8:308833/140‑1 (MQ=255)
ttttaaCCAATCCTGCCCCCTGAAAACCGGAATATTAAACGCATGTATCCGACCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCg < 3:1003236/133‑1 (MQ=255)
tttCCCAATCCGGCCCCCTTAAAACCGCCATCTTCATCCCATGCATCCTAACACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCa < 2:298550/140‑1 (MQ=255)
tttACCCATCCTGCCCACTGAAAAACGGCATCTTAATCCCATGCATCCGAAGACGACTCTACATCATATTTTAGGGATACCGCGACCACGCGGGCAACTGTCCCAAATTTGTCGATTGTTAAGTATACCCAGGGCGTg > 4:433723/1‑138 (MQ=255)
ttaaCCCATCCTGCCCCCTTAAAAACGGCATCTTCATCCCATGCATCCGCAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCa < 2:278574/137‑1 (MQ=255)
tatccccATCCTGCAGCGTGAAAAAGGGCAACTTCATCACATGAAGCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCa < 2:518713/136‑1 (MQ=255)
cccATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAAc > 1:434850/1‑140 (MQ=255)
cccATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAAc > 2:365141/1‑140 (MQ=255)
ccgccccccTTAAAACCGCCAGCTCCAACCCATGCATCCCACGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAAt < 6:259552/136‑1 (MQ=255)
ccTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACACCGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAAt > 1:1135517/1‑140 (MQ=255)
ccTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAAt > 6:896290/1‑140 (MQ=255)
ccTGCCCCCTAAAAAACGCCATCTTCAACCCATGCAACCCAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAAt < 7:381881/140‑1 (MQ=255)
cccccTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCa > 5:210335/1‑140 (MQ=255)
cccccTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACAGAATCTCa > 2:643594/1‑140 (MQ=255)
gCATCTTCATCCCATGCATCCTAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGa < 2:48512/140‑1 (MQ=255)
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GCCACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTTACGGATTGAATTAT > NZ_CP022686/1479482‑1479758
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
