Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F2 I0 R1
|
122 |
5985.5 |
7364544 |
98.3% |
7239346 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,572,721 |
A→C |
16.6% |
F186C (TTT→TGT) |
CIW80_RS12885 ← |
ROK family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,572,721 | 0 | A | C | 16.6%
| 268.5
/ 18.6
| 161 | F186C (TTT→TGT) | CIW80_RS12885 | ROK family protein |
| Reads supporting (aligned to +/- strand): ref base A (66/65); new base C (2/28); total (68/93) |
| Fisher's exact test for biased strand distribution p-value = 3.76e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 163 total aligned reads displayed.
CTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGATGGC > NZ_CP022686/2572588‑2572860
|
gtGTTGGCTAAAACGTGCCACCTGCTGAATGGCACATGCATCACCACGTTGGGCCAGGGTGACAATCGCCGCATAAGTGAGCACGTTACCAGTCATCTGTTGATCGCGTTCAATAAAACCGCTGCCGTAAACAAACGACt < 2:285206/139‑1 (MQ=255)
cTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACt > 3:653485/1‑140 (MQ=255)
cTGTAGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCAACACCACGTTGTGCCACGCTGACAAACGCCGCAGAAGTGAGCAAGATACCAGTCATCTGATGATAGCCTTCACTAAAACCGCTGCCGGAAACAAACGa > 6:867355/1‑138 (MQ=255)
ttGGCGAAAACGTGCCACCTGCTGCATGGCACGAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATTGCGTTCACTAAAACCGCTGCCGGAAACAAGCGACTCCa > 4:373401/1‑140 (MQ=255)
ttGGCGAAAACGTCCAACCTGCTGCATTGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACACACGACTccc > 7:672560/1‑139 (MQ=255)
ttGGCGAAAACGAGCCACATGCTTCATGGCACAAGCTTCAGCACGTTGTCCCAGGGTTACATTCGCGGAATAAGTGTGCAATTAACGAGTCATCTGTTTATAGCGTTCACTAAAACCGCTGCCGTAAACAAACGACTc < 6:44738/138‑1 (MQ=255)
ggCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACTTTGTGCCAGGGTGACAATCGCCGAAGAAGTGAGCAAGTTCCCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACACACGACTccc > 6:520602/1‑137 (MQ=255)
cGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAACCGACTCCACg > 6:904715/1‑138 (MQ=255)
gCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGttt > 3:141466/1‑140 (MQ=255)
gCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGttt > 8:198278/1‑140 (MQ=255)
cACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGttt > 6:741054/1‑138 (MQ=255)
gctgcATGGCACAAGCATCACCACGTTGTGCCAGGGTGCCAATCGCCGCAGAAGTGAGCAAGTTACCAGGCATCTGTGGATAGCGTTCACTAAACCCCCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCaa < 4:510520/140‑1 (MQ=255)
ctgcATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCCCTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAAt > 8:812401/1‑140 (MQ=255)
ccacaTGCATCACCACGTTGTGCCTGGGTGACAATCGCCGCACACGTGAGCATGTTACCTGGCATCTTTTGATAGCGTGCAATAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAact < 4:441768/139‑1 (MQ=255)
caacaAGCATCACCACGTTGGGCCTGGGTTACAAGCCCCGCATACGTGAGAATTTTACCAGTCATCTGTTTATAGCGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCaa < 5:59562/136‑1 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGCGCAAGTTACCAGTCATCTGTTGATAGCGTGCACTAAAACCGCTCCCGGAAACAAACGACTCCACGCAGTTTTGTTTGCCTCAATAGCAactg > 7:366073/1‑140 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAcctg > 2:755328/1‑140 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 7:699273/1‑140 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 4:244483/1‑140 (MQ=255)
aTCACCACGTGGGCCCAGGGTCAAAATCGCCGCAGAAGTGAGCATGTTCCCAGACATCTGTTGATAGCGTCCACTAAAACCGCGGCCGCAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAActgactga < 5:221851/138‑1 (MQ=255)
cacGTTGTGCCTGGGTGACAATCGCCGAAGAAGAGAGAAAGTTACCAGTCTTCTGTTTATAGCGTTCAATAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 6:801613/138‑1 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGACTGTCGCAAGTTACCAGTCATCTGTTGATAGCGGTCACTAAAACCGCTGCCGGAAACAAACGACTCCCCGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 2:510782/140‑1 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCTCAATAGCAACTGACTGATGGAc > 5:748051/1‑138 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 5:470992/1‑138 (MQ=255)
cacGTTGTGCCAGGGTCACAACCGCCGCTGACGGGCGCAAGTTACCTGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 6:755245/138‑1 (MQ=255)
cacGTGGTGCCAGGGTGAAAATCGCCGCAGAAGTGAGCACGTTACCTGTCAGCTGTTGATAGCGTGCACTAAACCCGCTGCGGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 8:53257/140‑1 (MQ=255)
cacGTGGTGCAAGGGTGACAATCGCCCCACATGTTACCATGTAACCAGTCATCTTTTGATCGCGTTCACAACAACCGCGGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 4:168225/140‑1 (MQ=255)
tgtgCCTGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 8:518447/140‑1 (MQ=255)
tgtgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc > 2:640833/1‑140 (MQ=255)
tgtgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTAACTAAAACCGCTGCCGGAACCAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACAGAAGGACCATCTTc > 8:136337/1‑140 (MQ=255)
tgagCCAGGGTGCCAATCGCCGCAGAGGGGAGCAAGTTACCAGTAAGCTTGTGATCGCGTTCCATCAACCCGCTGCCTGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCt < 6:44948/135‑1 (MQ=255)
ggtgCCTGGGTGCAATTCTCCGCAGAATTGAGCAAGTTACCTGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 8:346433/139‑1 (MQ=255)
ggtgCCAGGGTGACAATCGCCGCAGACGTGAGCAAGTTACCCGTAATCTGTTTATAGCGTACACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCt < 6:218109/137‑1 (MQ=255)
tgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACTACTCCACGCAGTTGTGTTTGTCGCAATAGCAACTGACTGATGGACCATCTTCCt > 8:714262/1‑140 (MQ=255)
tgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCAGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc > 6:298107/1‑138 (MQ=255)
tgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCACTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCt > 3:743980/1‑140 (MQ=255)
gCCTGGGTGACAATCGCCGCAGATGTGAGCAAGTTACCAGTAATCTGTTGATAGCGTTCAATAAAACCGCTGCCGGAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 8:37010/140‑1 (MQ=255)
gCCAGGTTGAAAATCGCCGCAGAATGTACCAAGTAACCAGTCATCTGTTCATAGCGTTCACTAAACCCCCTGCCGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 1:253115/140‑1 (MQ=255)
gCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCTGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 4:560817/140‑1 (MQ=255)
cctgggTGAAAATCGCCGCAGATGTGAGCAAGTTACCAGTCATCTGTTGTTAGCGTTCACAAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGc < 4:319448/137‑1 (MQ=255)
ctgggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTTTTTATAGCGTACACTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 4:239858/138‑1 (MQ=255)
ccgggTGACAAAGCCCGCAGAAGTTAGCATGTTACCCGTCATCTGTTTATAGGGTTCACTAAACCCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGAAATAGCAACTGACTGATGGACCATCTTCCTg < 5:671197/136‑1 (MQ=255)
cAGGTTGACAATCGACGCAGCAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 8:634177/140‑1 (MQ=255)
cAGGGTTACAATCCCCGCAGAAGTGACCAAGTTCCAAGTCAACTTTTGATAGCGTGCACTAAACCCGCGGCCGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 7:853924/140‑1 (MQ=255)
cAGGGTGACAATCGCCGCAGAAGTGAGCATGTTACCAGTCATGTGTTTATAGCGTTCAATAAAACCGCTGCGGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 2:804629/140‑1 (MQ=255)
cAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt > 8:244528/1‑140 (MQ=255)
cAGGGTGACAATCGCCGCAGAAGTCAGCAAGTTCCCAGTCATCTGTTGATAGCGTGCACTAACACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 2:231192/140‑1 (MQ=255)
ggagACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGATGATACCGTTCACTAAAACCGCTGCCGCAAACAAACGACTCCACTCAGTACTGTAAGCCGCAATACCAACTGACTCATGGACCATCTTCCTGCTCCg > 7:492134/4‑140 (MQ=255)
ggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCg > 3:593396/1‑140 (MQ=255)
ggACAATCGCGGCAGACTGTAGCAATTTACCCGTCATGTGTTTATCGCTTGCAAAAAACCCGGTGCCGCAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGta < 2:348496/139‑1 (MQ=255)
ggACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGta < 2:63038/139‑1 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata > 7:129153/1‑140 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata > 4:43918/1‑140 (MQ=255)
aagcgccgcTCAAGTGAGCACTTAACCAGTCATCTGTTGATCGCTTTAACAAAAACCGCTGCCGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata < 5:33129/135‑1 (MQ=255)
aaacgccgcAGAAGAGAGCAAGTTACCATTCATCTGATGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCAACTTCCAGCTCCGtatt > 6:124969/4‑137 (MQ=255)
agcgccgcAGAAGAGACCAAGTTCCCAGTCATCTTTTTATCGGGTTCAATAAAACCCCTGCCGTAAAAACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGcc < 1:641044/138‑1 (MQ=255)
gccgcAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTgg > 8:16137/1‑140 (MQ=255)
ccgcAGATGTGAGCATGTTACACGGAATCTGTTGTTAGCGTGCAAAAAACCGGCTGCCGGAAAAACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc < 7:469648/140‑1 (MQ=255)
ccgcAGAAGTGAGCAAGTTACCTGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc < 7:585339/140‑1 (MQ=255)
gcAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACTCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCATGCTCCGGATAGCCTGGc > 5:647711/1‑138 (MQ=255)
ccAGAAGTGAGCAATTTACCAGTAATGTGTTTATAGCTTTCAAAAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc < 5:100222/137‑1 (MQ=255)
cAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGatatt > 5:323479/1‑137 (MQ=255)
aCCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCAtt > 3:125003/1‑140 (MQ=255)
tCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCa > 8:641598/1‑51 (MQ=255)
tCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCa < 7:641598/51‑1 (MQ=255)
aTCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc > 4:938996/1‑140 (MQ=255)
gttttGATAGCGTTCAATAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCAt < 3:36717/137‑1 (MQ=255)
cTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCAt < 8:129153/140‑1 (MQ=255)
cTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCAt < 4:775919/140‑1 (MQ=255)
ttGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTc > 3:298530/1‑140 (MQ=255)
gATAGCGTTCACTAAAACCGCTGCCGGAAACACACGACTCCTCGCATTTGTGTTTGCCTCAATAGCAACTTACTGATGGACCATCTTCCTGCGCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTccc < 8:578597/140‑1 (MQ=255)
gATAGCGTTCACTAAAACCGCTGCCGGAAACAAACCACTCCACGCAGTAGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTccc > 7:804907/1‑140 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGcc > 3:267622/1‑57 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTcccc > 1:104573/1‑140 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTcccc > 3:487062/1‑140 (MQ=255)
tagatttCAATAAACCCGATCCCGTAAAAACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCa < 1:816851/135‑1 (MQ=255)
tAGCGTTCACTAAAACCGCTGCGGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTccc < 6:311391/138‑1 (MQ=255)
aGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc > 1:102812/1‑127 (MQ=255)
aGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc < 2:102812/127‑1 (MQ=255)
aGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAg > 3:70440/1‑140 (MQ=255)
gggTTCAAAAAAACCGCTGCCGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 1:639299/138‑1 (MQ=255)
gCGTTCACTAAAACCGCTGCCTGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 4:139864/140‑1 (MQ=255)
gCGTTCACTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 3:918730/140‑1 (MQ=255)
gCGTGCCCTAAACCCGCTGCCGGAAAAACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 7:157412/140‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGCTGGACCATCTTCCTGCTCAGTATAGACTGGCACAGTGATATGACCGCATTCGGCAGCATTTAACCAgtc > 2:587529/1‑138 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc > 4:379537/1‑140 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGCCTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCCACGTGATATGCCCGCATTCGGCAGCATTTCCCCCGGcccc > 8:650487/1‑140 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcccc > 3:109150/1‑140 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcccc > 7:784042/1‑140 (MQ=255)
cTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCAt > 4:111566/1‑124 (MQ=255)
aacccGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCTTTCGGCAGCATTTCCCCGGGCCCCTATaaa < 2:505381/137‑1 (MQ=255)
aacccGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCtata < 6:103785/135‑1 (MQ=255)
aaaCCGCTGCCGTAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATaaa < 1:485550/140‑1 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCgg < 3:388113/109‑1 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCgg > 4:388113/1‑109 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCg < 1:550630/140‑1 (MQ=255)
cTGCCGGAAACAAACGACTCCAAGCAGTTGTGTTAGCCGCAATAGCAAGTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCCGCAGCATTTACCAAGGCCCCTTTAAACGGTCg > 3:22922/1‑140 (MQ=255)
tGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCTACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTc < 5:702283/138‑1 (MQ=255)
aaccaaacGACTCCACGCAGGTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTg < 1:870087/137‑1 (MQ=255)
aacGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGATGGc < 8:784042/140‑1 (MQ=255)
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CTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGATGGC > NZ_CP022686/2572588‑2572860
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
