Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F13 I0 R1
|
230 |
5035.0 |
9125430 |
98.4% |
8979423 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,572,721 |
A→C |
11.0% |
F186C (TTT→TGT) |
CIW80_RS12885 ← |
ROK family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,572,721 | 0 | A | C | 11.0%
| 458.5
/ 9.5
| 234 | F186C (TTT→TGT) | CIW80_RS12885 | ROK family protein |
| Reads supporting (aligned to +/- strand): ref base A (119/82); new base C (3/30); total (122/112) |
| Fisher's exact test for biased strand distribution p-value = 3.18e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 237 total aligned reads displayed.
AGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGATG > NZ_CP022686/2572586‑2572858
|
ttGGCAAAATCGTGCCACCTGATGCATGCAAAAAGAATCACCACGTTGTGCCTGGTTTAAAAGCGCCGCATAAGTTATCAAGTAACAATTCATCTTTTTATAGCGTTCAATAAACCCGGTGCCGGAAACAAACGACTc < 8:779474/138‑1 (MQ=255)
ggCTAAACCGTGCCCCCTGATGCATGCCACAAGCATCCCACCTTTGTGCCAGGGGGACAAGCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACg < 2:736849/140‑1 (MQ=255)
ggCGAAACCTGGCCACGGTCTGAAGGGCAAAAGCTTCACCCCTTGGTGCCTGGGTGAAAATCGCCTCAGAAGTGAGCAAGTTACAATTATTATGTTTTTAGCGTTCCCTAAAACCTATTCCGGATACAAACGACTCCa < 8:892250/138‑1 (MQ=255)
ggCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACg > 3:840603/1‑140 (MQ=255)
aaaaCGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGt > 1:1088352/1‑140 (MQ=255)
aaaaCGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGt > 1:374201/1‑140 (MQ=255)
tGCCACCTGCTGAATGGCAAAAGCATCACCCCGTTTTGCAAGGGTGACAATCCCCGCTGATGTGAGCAAGTTACCTGTCATATGTTTATAGCGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTtgtg < 8:307488/138‑1 (MQ=255)
gCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGttt > 2:833383/1‑140 (MQ=255)
ggCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCaa > 3:634048/1‑139 (MQ=255)
ggCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCaa < 4:634048/139‑1 (MQ=255)
gCACAAGAATCACCAGTTTGTGCCAGGGTGACAATCGCCGCAGATGTGAGCAAGTTACCAGTCATCTGTTGATCGCGTTCACTAAAACCGCGCCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAact < 6:228930/140‑1 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 6:978681/1‑140 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 4:1156673/1‑140 (MQ=255)
caAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 7:702734/1‑138 (MQ=255)
gCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAActgactga > 3:578080/1‑140 (MQ=255)
gCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAActgactga > 5:939343/1‑140 (MQ=255)
aTCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAActgactga > 7:258761/1‑138 (MQ=255)
aTCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAAAAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAActgactga > 8:1062116/1‑138 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 5:872128/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 1:6788/1‑140 (MQ=255)
cccGTTGTGCCTGGTGTAAATTCGCCGCATAATTTAGAAAGTCACCCGTCTTATGTTGATCGCGTGAACTAAAACCGCTGCCGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 8:948211/136‑1 (MQ=255)
cacTTTGGGCCTGGGTGACAATCGCCGCAGAAGTGAGAATGTTACCAGTCATCTGTTTATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 4:1047020/140‑1 (MQ=255)
cacGTGGTGCCAGGGTGACATTCGCTGCAGCAGTGTGAAAGTTACCCTTAATCTGTTTATCGCGTTCACTAAACCCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGACGCAATAGCAACTGACTGATGGAc < 7:359520/138‑1 (MQ=255)
ttGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCtt > 3:178517/1‑140 (MQ=255)
tgtgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc > 1:244100/1‑140 (MQ=255)
tgtgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc > 3:380349/1‑140 (MQ=255)
tgtgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc > 1:598914/1‑140 (MQ=255)
ggtccctgggTGACAATCCCCCCACAAGGGAGCAATTTACCAGCAATCTTTTTATCGCGTCCACTAAACCCCCTGCCGCAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 3:80324/133‑1 (MQ=255)
cccAGGGTGACAATCGCCCCAGACGTGAGCAAGTTACCAGTCATCTCTGCATCGCGTTCACTAAACCCGCGGCGGGAACCACACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 2:136557/139‑1 (MQ=255)
ctggttGACACTCGCCGAATTAGTGAGAATGTTACCAGTGCTCTGTTGATAGCGTGCACTAAACCCGCTGCCTGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 4:438082/135‑1 (MQ=255)
ctgggTGTAAATCGCTGCATAAGTGCTCATGTTACAAGTAAGCTGTTGATATCGTGCACTAAACCAGCTGCCGCAACCCAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGCCTGATGGACCATCTTCCTGcg < 4:77678/138‑2 (MQ=255)
ctgggTGACAATCGCCGCAGAAGTGAGAAATTTACCAGTCATCTGTTGATAGCTTCCAAAAAAACCGCGGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 8:702734/136‑1 (MQ=255)
ctgggTGACAATCGCCCCATAAGTGAGCATTTTACAAGACATCTGTTTATAGCGTACACAAAACCCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 1:13253/138‑1 (MQ=255)
ctgggTGACAACGGCCCCAGATGTGTCCAAGTAACCAGTCATCTGTTCAACCCGTTCACAAAAACCGCGGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 8:421586/136‑1 (MQ=255)
ctggctGACAAGCCCCGCCGACGTCAGAAAGATACCAGTCATCTGTCGATCCCGTCAACTAAAACCGCGCCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 2:316957/135‑1 (MQ=255)
cAGGGGGAAAAGCGCCGCAGACGTCAGCATGTTACCAGGCATCTGTTTATCGCGTTCACTAAAACCGCTGCCGTACACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 3:126887/140‑1 (MQ=255)
aGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 8:136801/127‑1 (MQ=255)
gggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTcc > 3:345662/1‑140 (MQ=255)
gggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTcc > 5:79840/1‑140 (MQ=255)
ggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACAATCTTCCTGCTCCg > 5:410961/1‑140 (MQ=255)
tGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTCTTTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCGccc > 7:184363/1‑137 (MQ=255)
tGACAATCGCCGAAGAAGTGAGCAAGTAACCAGTCATCTGTTTATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGta < 2:1102196/140‑1 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTTTTTGc < 2:866839/97‑1 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata > 2:229420/1‑140 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTAGTCTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata > 4:424167/1‑140 (MQ=255)
cAATCGCCGCAGAAGTGAGCAAGTTACAAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAACAACACGACTCCACGCAGTTGTGTTTGCAGCAATAGCAAATGACTAAAGAACAATCTTCATGCTCCGtat > 7:121786/1‑138 (MQ=255)
ccgcAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc > 1:353048/1‑140 (MQ=255)
cgcAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGACGCAAAAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGcg > 2:354752/1‑139 (MQ=255)
gcatatgTGAGCATGTTACCAGTCAGCTGTTTATAGCGTTCAATAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc < 7:542278/132‑1 (MQ=255)
gcAGATGTGCGCAAGTAACCAGTCTTCTGTTGATAGCGTTCAATAAACCCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCaa < 3:743711/140‑1 (MQ=255)
gcAGAAGTGAGCACGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACGGCTGCCGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCaa < 4:125770/140‑1 (MQ=255)
gaatatgTGAGCATGTTACCAGTCATCTGTTGATCGGGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGTAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCaa < 6:159868/134‑1 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAACACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGTCCCATCTTCCTGCTCCGTATAGCATGTCAACGTGATATg > 2:516545/1‑140 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 6:7651/1‑140 (MQ=255)
aGCAAGTTACCAGTAATCTGTTGATAGCGTTAACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGATTGCCGCAATAGCCACTGCCTGATGGACAATCTTCCTGCTCCGTATAGCCTGGCCACGTGATATg > 2:650473/1‑140 (MQ=255)
cAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 8:50922/1‑138 (MQ=255)
cAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 7:971412/1‑138 (MQ=255)
tatACAAGTCATCTGTTGATAGATTTAAATAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCATGGCAACGTGATATGACCGc > 6:556091/3‑140 (MQ=255)
gTCATTTGTTTATAGGGTTAAATAAAACGGCTGCCGTAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc < 5:129928/140‑1 (MQ=255)
gTCATCTGTTGATAGCGTTCCCTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc > 3:289814/1‑140 (MQ=255)
gTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTACGTATAGCCTGGCAACGTGATATGACCGCATTCGgc < 6:540380/140‑1 (MQ=255)
cATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACACTCTTCCAGCTCCGTATAGCCTGGCAACGTGATATGACAGCATTCGgc > 7:78873/1‑138 (MQ=255)
aaTCTGTTGATCGCGTTCACTAAAACCGCTGCCGTAACCAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcag < 3:493912/139‑1 (MQ=255)
aTCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGCCCATCTTCCTGCTCCGTATAGCCTGGCCACGTGATATGAGCTCATTAGgcagc > 1:40075/1‑140 (MQ=255)
aTCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc > 2:512513/1‑140 (MQ=255)
tttttGATAGGGTTCAATAATACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCAt < 3:671315/137‑1 (MQ=255)
cTGTTGATCCCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCAt < 5:481236/140‑1 (MQ=255)
cTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAACCGACTCCCCGCAGTTGTGTTTGCCGCAATAGCCACTGCCTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCCTTCGgcatc > 7:533780/1‑136 (MQ=255)
cTGTTCATATCGTTCACTAAAACCTCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCAt < 2:1090637/140‑1 (MQ=255)
ttGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTc > 5:629780/1‑140 (MQ=255)
gttcgCGTTCACTCAACCCGCTGCCGCAAACAAACGACTCCACGCAGTGGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTccc < 5:311507/136‑1 (MQ=255)
aTAGCGTTCTCTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGAATTTcccc > 6:913371/1‑140 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt > 2:560432/1‑92 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTcccc > 3:992977/1‑140 (MQ=255)
aGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCAGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAg > 2:88828/1‑140 (MQ=255)
gctttCAATCAAACCCCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTTATATGACCGCATTCGGCAGCATTTCCCCAgg < 5:384556/137‑1 (MQ=255)
gCGTTCACTAAACCAGCTGCCGGAACCAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTACTTCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCa < 7:88515/138‑1 (MQ=255)
gCGTTCACTAAAACCGCTGCGGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCa < 8:595986/138‑1 (MQ=255)
gCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 4:241657/140‑1 (MQ=255)
gCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 3:892489/140‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTTCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc > 4:678975/1‑140 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGGTATGACCGCATTCGGCAGCATTTCCCCAGGc > 1:671038/1‑140 (MQ=255)
ttCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAAGGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc > 8:552895/1‑138 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAGCGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcccc > 5:1119983/1‑140 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcccc > 3:772818/1‑140 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcccc > 2:987038/1‑140 (MQ=255)
cACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGccc > 8:732822/1‑138 (MQ=255)
aCTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcccc > 8:211137/1‑138 (MQ=255)
aaaCCCCTGCCGTAACCACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATTGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATaaa < 4:41409/140‑1 (MQ=255)
aaCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAAc > 2:968984/1‑140 (MQ=255)
aaCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAAc > 4:518834/1‑140 (MQ=255)
cTGCCGGATACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACACACTGATGGACCATCTTCCTGCTCCGTATAGACTGGCAACGTCATATGACCGCAGTCGGCAGCATTACCCCAGGCACCAATAAACGTTCg > 3:667548/1‑140 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 3:931755/61‑1 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATaaa < 3:1072905/134‑1 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCg > 5:1017533/1‑140 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCg > 1:949065/1‑140 (MQ=255)
tGCCGTAACCAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGt < 6:406146/140‑1 (MQ=255)
tGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGt < 4:833340/140‑1 (MQ=255)
aaacaaacGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTg < 1:856885/140‑1 (MQ=255)
aacGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGATg < 7:924955/138‑1 (MQ=255)
|
AGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGATG > NZ_CP022686/2572586‑2572858
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
