Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F2 I0 R1
|
233 |
6461.8 |
9239822 |
98.3% |
9082745 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,572,721 |
A→C |
9.7% |
F186C (TTT→TGT) |
CIW80_RS12885 ← |
ROK family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,572,721 | 0 | A | C | 9.7%
| 432.2
/ 11.1
| 221 | F186C (TTT→TGT) | CIW80_RS12885 | ROK family protein |
| Reads supporting (aligned to +/- strand): ref base A (113/81); new base C (2/25); total (115/106) |
| Fisher's exact test for biased strand distribution p-value = 3.91e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 228 total aligned reads displayed.
GCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGATGGC > NZ_CP022686/2572583‑2572860
|
aGCTGTTGGCGAAAACGTGCCACCTGCTGCTTGGCACAAGCTTCACCTCTTTGTGCCTGGGTGACAATCGCCGCAGTAGTGAGCAAGTTACCAGTCATGTGTTGATAGCGTTCACTAAAACCGATGCCGGAAACAAACGa < 2:727611/140‑1 (MQ=255)
ggCGAAAACGGGCCACCTGCTGATTGGAACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAATTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACg < 1:1129196/140‑1 (MQ=255)
taaaaCGTGCCACCTGCTGCATGGCACAAGAATCACCACGTTGTGCCTGGGTGACAATCGCCGCAGAAGTGAGCAAGTAACCAGTCATCTGTTGATCGCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAg < 2:607808/139‑1 (MQ=255)
taaaaCGTCCCACCTGCTGCAGGGCAAAAGCATCACCACGTGGGGCCAGGGTTACAAGCGCCGCATAAGTGAGCAATTTACCAGTCATCTGTTGATAGCGTCCAAAAAAACCGCTGCCGCAAACAAACGACTCCACGc < 6:807020/137‑1 (MQ=255)
cGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTtgtg > 4:287280/1‑140 (MQ=255)
gcccACGTGCTGAAGGGAACAAGCATCACCACTTTGTGCCAGGGTGACAATCGCCGCAGACGTGAGCATGTTACCAGGCATCTGTTAATCGCGTTCACAAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGtt < 7:880781/138‑1 (MQ=255)
cgCCACCTGCTCCAGGCCACAAGCATAACCCCGTGTGGCCTGGGTGACAATCGCCGCTGAAGTGAGCAAGTTCCCAGTCATCTTTTGATCGCGTACACAAAACCCGCGGCCGCAAACAAACGACTCCACGCAGTtgtg < 5:558732/137‑1 (MQ=255)
ctgctgCAGGGAACAACCATCCCCCCGTGGTGCCTGGTTGCCACTCGCCGCATATGGTAGCAAGTTACAAGGCAGATGTTTATAGCTTTCACTAAACCCCCTGCCGGCAACAAACGACTCCACGCAGTTGTGTTTGCCGc < 7:86626/140‑1 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 1:1009550/1‑140 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 7:997071/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 4:502072/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATCGCAACTGACTGATggcc > 1:87652/1‑138 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 1:321784/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 1:100321/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 3:160850/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 2:8871/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCAGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 7:426228/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGACGGAAACAAACTACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 8:14224/1‑140 (MQ=255)
cccGTTGTGCCCGGGTGACAATCGCCGCAGAAGTGTGCAAGTTACCCGTCATCTGTTGATAGCGTCCACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 6:794771/136‑1 (MQ=255)
cccGTGGTGCCAGGGTGACAATCGCCGCAGAAGTGACCAAGTAACCAGACATCTGTTGATAGCGTTCACTAACACCGCTGCCGCAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 1:576274/138‑1 (MQ=255)
acggTTGGGCCAGGGTGAAAATCGCCCCATACGTCAGCAATTTACCTTTCTTCTTTTTATAGCGTTCAATAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 6:1106907/135‑1 (MQ=255)
tgtgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCt > 6:1012546/1‑138 (MQ=255)
tgtgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 4:829426/140‑1 (MQ=255)
tgtgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 4:99242/140‑1 (MQ=255)
tgtgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATATGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCCCGCAGTAGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc > 3:848940/1‑140 (MQ=255)
tgggcgaGGGTGCAAAACGCCGCAGACGGGAGCAAGTAACCAGTCATCTGTTGATAGGGGTCACTATACCCGCTGCGGTACACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCt < 6:1045375/132‑1 (MQ=255)
tgCCAGGGTGACAATCGCCGCAGAAGTGCGCAAGTTACCAGTCATCTGTTGATAGCGATCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCt > 2:1202157/1‑140 (MQ=255)
tgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc > 6:957959/1‑138 (MQ=255)
tgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCt > 4:213259/1‑140 (MQ=255)
tgCCAGGGTGACAATCGCCGCAGAAGTCAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCAGGATACAAACGACTCCCCGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCt > 3:632396/1‑140 (MQ=255)
gcatgggTTACATTCGCCGCAGAAGGGAGCAAGGAACCAGTCTTCTGTTGATGGGGTTCACTAAAACCGCTGCCGGAAAAACACGACGCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 1:924360/136‑1 (MQ=255)
gCCTGGGTTCCAATCGCCGAAGAAGTGAGCAAGTTACCAGTCATCTGTTTATAGGGGACACTAAACCCGCTGCCGCAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTcc < 6:499275/138‑1 (MQ=255)
gCCTGGGTTACAATCGCCGCATATGTGAGCAAGTTACCATTCATCTGTTTATCGCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTcc < 6:889848/138‑1 (MQ=255)
ccctgggTGACACTCGCCTCATACTGCAGCCAGTTCCCCGCCATATGTTGAACGCGTACCCAAAACCGGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 7:551355/136‑1 (MQ=255)
ccaaGGGTGACATTCGACGCATAAGTTAGAAAGTTTCCATTCATCTTTTTATCGCGTGAAAAAAAACGTCTGCCTTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTcc < 6:402684/135‑1 (MQ=255)
ctggggGACAAGCGCCGCAGAAGGTAGCAAGTACCCAGTCATCTGTTGATAGCGTTCACTAAACCCGCGGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 5:353150/136‑1 (MQ=255)
cggggTGAAAACAGCCTCAGACTTGAACAATTTACAAGTACTATGTTTATAGCGATCAAACAAACCGAGGCCTGAAACAAACGAATCCACGCAGTTGTGTTTGCAGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 7:361667/138‑1 (MQ=255)
cAGTGTGACAATCTCCGAAGAAGTACCCAAGTTACAAGCAATCTGTTGATAGCGGTCACTAAAACCGCTGCCGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 8:626105/140‑1 (MQ=255)
cAGGGTGACAATCGCCGACGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 6:446852/138‑1 (MQ=255)
cAGGGTGACAAGCGCCGCAGAAGTTAGCAAGTTCCCAGTCATATGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 6:371597/138‑1 (MQ=255)
gggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt > 5:235891/1‑138 (MQ=255)
ggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAACCGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCg > 3:110023/1‑140 (MQ=255)
tGACAATCGCCGCAGAAGTGAGCAAGTTACAAGTCATCTGTTGATAGCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGta < 2:464457/140‑1 (MQ=255)
tGAAAATCGCCGCATAAGTGATCAAGTTCCATGTAATCTTTTTATGCCGTTAAATAAAACCGCTGCCGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGta < 7:634606/140‑1 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata > 4:570087/1‑140 (MQ=255)
cgccgcAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTg > 3:540871/1‑140 (MQ=255)
gccgaAGAAGTGAGCAATTTACCCGTCAGGTGTTGATCGCGTTCCCTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTgg < 4:125953/140‑1 (MQ=255)
gctgAAGTTATCAAGTTACCAGTCATCTGTTTATAGCGTTCAATAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc < 5:665193/135‑1 (MQ=255)
gctgAAGTTAGCAAGTTACCAGTAATTTGTTTATAGCGTTCAATAAAACCGATGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCaa < 3:269109/137‑1 (MQ=255)
gcATAAGTGAGCAAGTTCCCAGTAATCTGTTGATCGCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCaa < 3:923637/140‑1 (MQ=255)
ccAGAAGTTAGCAAGTTACCAGTCATCTGTTTATAGCGTTCACTAAAACCGCGGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCaa < 7:376148/139‑1 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGTCCATCTTCCTGCTCCGTATAGCCTGGCACCGTGATATg > 2:1020306/1‑140 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 2:992099/1‑140 (MQ=255)
cAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 5:108427/1‑138 (MQ=255)
gTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGc > 1:512540/1‑140 (MQ=255)
ttACCAGCCAGCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCa < 2:405816/140‑1 (MQ=255)
aCCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGCCCCTCTTCCTGATCCGTATAGCCTGGCGACGGGATATGACCGCAtt > 7:705058/1‑140 (MQ=255)
gtatccTGTTGATTGCGTGCCCTAACACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGCCCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc < 4:702066/135‑1 (MQ=255)
tCATCTGTTGATAGCGTTAACAAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTTTGTTTGCCGCAATAGCAACTGACAGATTGACCAAAATCCTTCTCCGTATAGCCTTGCAACGTGATATGACCCCAATAGgca > 8:465087/1‑140 (MQ=255)
aTCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTTCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgca > 5:656975/1‑138 (MQ=255)
tCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACCACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCAATCGgcagca > 3:969635/1‑140 (MQ=255)
gtGTTCATTGCTTACAATAAACCCGATGCGGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTGCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc < 5:148322/137‑1 (MQ=255)
cTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGAACGAATTCGgcagc > 6:216509/1‑138 (MQ=255)
cTGTTGATAGCGTTCACTAAAACCGATGCCGGAAACAAACGACTACACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTCGCAACGTGATATGAACGCATTCGgcagc > 6:277078/1‑138 (MQ=255)
taTAGCGTTCACTAAAACCGCTGCCGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTc < 5:178440/137‑1 (MQ=255)
gATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACAATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTc > 6:125104/1‑138 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 8:562004/90‑1 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTcccc > 3:713551/1‑140 (MQ=255)
ctgggTTCACTAAACCCGCTGCGGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTTATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCa < 1:439618/136‑1 (MQ=255)
aGCGTTCACTAAAACCGCTGCCGGAAACACCCGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAg < 2:324750/140‑1 (MQ=255)
gggtacACTAAAACCGCTGCCGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 1:75320/135‑1 (MQ=255)
gCGTTCACTAAAACCGCTGCCTTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 3:176086/140‑1 (MQ=255)
gCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCa < 5:1031915/138‑1 (MQ=255)
gCGTTCACAAAAACCGCTGCCGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 3:1152746/140‑1 (MQ=255)
gCGTGCACTCAAACCCCTGACGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 8:1073643/140‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGTAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATTGACCCTCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc < 2:1100694/140‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAact < 2:641426/65‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc > 4:1110028/1‑140 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc > 1:950774/1‑140 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACCTGATATGACCGCATTCGGCAGCATTTCCCCAGGc > 7:1073084/1‑140 (MQ=255)
ttaaCTAAAACCGCTGCGGTAAAAAAACGTCTCCTCGCAGTTGGGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGccc < 7:1032679/137‑1 (MQ=255)
ttCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc > 6:709988/1‑138 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATTCCCGCATTCGGCAGCATTTCCCCAGGcc > 6:233638/1‑138 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCCGCATTTCCCCAGGcccc > 1:273005/1‑140 (MQ=255)
aCTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCTACTGACTGATGGCCCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCta > 7:197609/1‑140 (MQ=255)
aCTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTAGTGTATGCCGCAATAGCAACTGCCTGATGGACAATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATTACCGCATTCGGCAGCATTTCCCCAGTCCCCta > 4:412288/1‑140 (MQ=255)
aaaCCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGCTGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATaaa < 1:1141319/140‑1 (MQ=255)
ccGCTGCCGGAAACAAACGACTCCACGCAGTTGTTTTTGCCGCAATAGCAACTGACTGATGGACCAACTTCCTGCTCCGTATAGCCTGGCAACGTGAAATGACCGCATTCGGAAGCATTACCCCAGGACCCTATAAACgg > 8:155944/1‑140 (MQ=255)
ccGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTg > 5:842154/1‑88 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt > 7:363041/1‑73 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 8:363036/73‑1 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCg > 4:673667/1‑140 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATATTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGACACTATAAACGGTCg > 8:223610/1‑140 (MQ=255)
cTGCCGGAAACAAACGACTCAACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc > 3:646613/1‑68 (MQ=255)
gCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCa < 1:318015/102‑1 (MQ=255)
gCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCa > 2:318015/1‑102 (MQ=255)
caaacacacGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATTGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGGCGTTGCtt < 8:663493/139‑1 (MQ=255)
aaacaaacGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTg < 1:235421/140‑1 (MQ=255)
acaaacGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGAt < 3:998609/140‑1 (MQ=255)
aacGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGATGGc < 7:500050/140‑1 (MQ=255)
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GCAAGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGATGGC > NZ_CP022686/2572583‑2572860
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
