Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F2 I0 R1
|
252 |
7301.5 |
9636800 |
98.5% |
9492248 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,572,721 |
A→C |
8.2% |
F186C (TTT→TGT) |
CIW80_RS12885 ← |
ROK family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,572,721 | 0 | A | C | 8.2%
| 383.1
/ 3.2
| 202 | F186C (TTT→TGT) | CIW80_RS12885 | ROK family protein |
| Reads supporting (aligned to +/- strand): ref base A (89/89); new base C (3/20); total (92/110) |
| Fisher's exact test for biased strand distribution p-value = 6.79e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 211 total aligned reads displayed.
AGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGATGGC > NZ_CP022686/2572586‑2572860
|
tgCTGTTGGCGAAAACGTGCCACCTGCGGCATGGCAAAAGCATCACCACGTTGTGCCTGGGTGACAATCGCCGCATAAGTGAGAAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGaaacaaac < 2:678169/137‑1 (MQ=255)
gTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTcc > 6:326212/1‑140 (MQ=255)
ttGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCCGGGTGACAATCGCCGCAGAAGTGAGCAATTTACCAGTCATCTGTTGATAGCGTTAACTAAAACCGCTGCCGGAAACACACGACTCCa < 8:300789/140‑1 (MQ=255)
ggCGAAAACGGGCCACCTGCCGCATGCCACAAGCACCACCCCGTTGTGCCTGGGTGACAATCGCCGAATAAGTCAGCAAGTTACACGTCATGTGTTGATAGCGTTCACTAAACCCGCTGCTGGAAACAAACGACTCCACg < 6:914611/140‑1 (MQ=255)
ccACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTCCCAGTCATCTGGTGATAGCGTTCACTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTg > 6:1057110/1‑140 (MQ=255)
ctgctgCCTGGCACATGCATCCCCACGTTGGGCCAGGGCGACAATCGCCGCAGACTTCAGCATGTAACCAGTCAGCTGTTGAAAGCGGTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGc < 8:835569/140‑1 (MQ=255)
ctgcATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCa > 1:130911/1‑138 (MQ=255)
tgcATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATa > 8:7240/1‑140 (MQ=255)
gggCACAAGCATCCCCCCGTTGGGCCAGGGTCACAATCCCCGCAGAAGGCAGAATGTTACCAGTCATCTTTTTATAGGCTTCAATAAAACCCCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCaa < 6:733944/139‑1 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 8:159897/1‑140 (MQ=255)
acaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAATCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAact > 1:747991/1‑138 (MQ=255)
caAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATATCGTTCCCTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 1:1181386/1‑138 (MQ=255)
caAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCTCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAactgac > 5:998074/1‑140 (MQ=255)
caAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactgac > 5:1100629/1‑140 (MQ=255)
caAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 1:908535/1‑138 (MQ=255)
caAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTAGTGTTTGCCGCAATAGCAactt > 1:445643/1‑137 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAACCGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 3:1156714/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 5:263878/1‑140 (MQ=255)
cccGTTGTGCCTGGGGGACAATCGCCGCAGAAGTGAGCACGTTCCCCGTCACCTGTGTATAGCGTTCACTAAAACCGGTGCCCGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 1:469212/136‑1 (MQ=255)
cacGTTTTGCAAGGGTCAAAATCGCCGCATAAGTGAGCAATTTACCAGTAATCTGTTTATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 6:359933/140‑1 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTAATCTCTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 1:165471/1‑138 (MQ=255)
cacGTGGTGCCTGGGTCACAATCCCCGCATATGTCAGCATTAAACCATTCATCTTTTGATCGCGTTCAATAAACCCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 1:1236664/138‑1 (MQ=255)
tgtgCCTGGGTTCCATTCGCCGCAGAAGTTAGCAAGTTACCAGTCATCTGTTGATAGCTTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCTCAATAGCAACTGACTGATGGACCATCTTc < 4:1210807/140‑1 (MQ=255)
tgtgCCTGGGTGAAAATCGCCGCACACGCGAGCAATTAACCCCTCATCTGTTTAACGCGTTAACAAAAACCGCTGCCGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 7:539523/140‑1 (MQ=255)
tgggCCTGGGTGACAAGCCCCGCATAATTGCCCTAGATACCAGGCATATGTTGATCGCGTCCACTAAACCCGCGGCCGGCCACAACCGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 7:66932/137‑1 (MQ=255)
ggtgcatgggTGACAATCGCCGCATACGTGAGCATGTTACCTGTCATCTGTTTATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 7:897400/133‑1 (MQ=255)
tgCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCGGTTGATAGCGTTCACTAAAACCGCGGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCt > 3:90103/1‑140 (MQ=255)
gCCTGGTTGACTATAGCCGCTTAAGTTAGCATGTTACTAGTCATCTGTTTATAGGGTTAACTAAAACCGCGGGGGTAAACTCACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 6:419588/140‑1 (MQ=255)
gCCTGGGTGACATGCGCCGCACCATTCACCAATTTACCAGACATCTGTTTATCGCGCTCACAAAACCCGCTGCCGCAAACCAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 7:772733/140‑1 (MQ=255)
gCCTGGGTGACAATCGCCGCAGAAGTGCGCAAGTTACCAGTCATCTGTTGATCGCGTGCACTAAACCCGCTGCCGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 7:753948/140‑1 (MQ=255)
gCCAGGGTGACAATCGCCGCATAAGTGATCAAGTTACCAGTCATCTTTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 4:308691/140‑1 (MQ=255)
ccttgggTGATAATCCCCGCATAAGTTTGAAAGTAAGCTGGCTTTTTTTTATTGCGTGCAGATATACCGGTGCCTTAAACAATCGACTCCACGCAGTTGTGTTTGCGGCAATAGCAACTGACTGATGGACCATCTTcc < 2:213862/134‑1 (MQ=255)
ccAGGGTTAAAATCGCCGCTGAAGTGACCATTTTACCTGACTTTTGTTGATAGCTTTAAATAAAAGCGCTGCCGGAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGc < 5:979104/140‑1 (MQ=255)
ccAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCt > 2:84146/1‑138 (MQ=255)
ctggttGACAATCGCCGCATATGTGAGCAAGTTACCAGTAATCTGTTGATAGCGTTCACTAAACCCGCTGCCGTAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 5:131140/135‑1 (MQ=255)
cAGGGTGACAATCGCCGCAGAAGGGAGCACGTAACCAGGACTCTGTTGATCGCGTCCACTAAACCCGCTCCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 6:407488/140‑1 (MQ=255)
aaGGGTGACAATCGCCGCAGAAGTGAGAAAGTTACCAGTCATAGTTTGATAGCGTGCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 6:71254/139‑1 (MQ=255)
tGACAATCGCCGCAGAAGTGAGCAAGTTACCATGCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGTAAACACCCGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCg < 2:916711/138‑1 (MQ=255)
tGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCg > 1:1090613/1‑138 (MQ=255)
tGACAAGCGCCGCTGAAGTTAGCAAGTTACCAGTAATCTGTTGATAGCGTTCACAAAAACCGCTGCCGGACACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCg < 1:606298/138‑1 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTTCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCAGCAATAGCAACTGACTGATGGACCATCTTCCTGATCCGtata > 4:121711/1‑140 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCaa > 3:74657/1‑108 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCaa < 4:74657/108‑1 (MQ=255)
ggcggcAGATGTGACCACGTTACCAGTCTTCTGTTTATAGCGTTCACTAAAACCGCTGCGGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGcc < 2:1111051/134‑1 (MQ=255)
gccgcAGAAGTGAGCATGTACCCAGGCTTCTGGTGATATCGCTCACTAACCCCGCTGCCGAAACCAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTgg < 7:209488/140‑1 (MQ=255)
gccgcAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg > 6:202859/1‑125 (MQ=255)
cccgcAGAAGTTAGCACGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCt < 2:161910/137‑1 (MQ=255)
ccgcAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc > 5:1129832/1‑140 (MQ=255)
gacgAAGTGAGCAAGTTAACAGACTTCTTTTTATAGCTTTCAATAAACACGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCaa < 5:924980/137‑1 (MQ=255)
ccAGAAGTGAGCAAGTTACCAGTCATGTGTTGATAGCTTTCAATAAAACCGCTGCCGCAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCaa < 6:114459/139‑1 (MQ=255)
cAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTACCTGCTCCGTATAGCCTGGCacc > 4:654790/1‑138 (MQ=255)
cAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCa > 1:389458/1‑138 (MQ=255)
aGCAAGTGACCAGTCATCTGTTGATAGAGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTGGCCGCAATAGCCACAGACTTATGGACCATCTTCATCCTACGTGTAGCCAGGCAACATGatatt > 7:686851/1‑139 (MQ=255)
cAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 1:664279/1‑138 (MQ=255)
gTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCTCAATAGCAACTTAATGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGc > 4:1039549/1‑140 (MQ=255)
gTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGc > 8:207066/1‑140 (MQ=255)
ttACCTGTCATCTGTTGATAGCGTTAAATAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCa < 4:500671/140‑1 (MQ=255)
agcaaTCTGTTTATCGCGTCCACTAAACCCGCGCCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCgg < 5:650308/136‑1 (MQ=255)
aGTCATCTGTTTATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCgg < 8:658083/140‑1 (MQ=255)
gTCATGTGTTGATAGCGTTCACAAAACCCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc < 4:985551/140‑1 (MQ=255)
gTCATCTGTTGATAGCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc < 7:1082515/140‑1 (MQ=255)
aTCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAAAAAACGACTCCACGCAGTTGTGTTTGCAGCAATAGAAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCACCGTGATATGACCGCATTCGgcagc > 8:1009795/1‑140 (MQ=255)
tCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagca < 8:351954/140‑1 (MQ=255)
ccTGTTGCTCGCGTTCAATAAAACCGCGGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcag < 1:439007/137‑1 (MQ=255)
cTGTTTATAGCGTTCACTAAAACCGCTGCCGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc < 2:239287/138‑1 (MQ=255)
cTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc > 2:627263/1‑138 (MQ=255)
cTGTTGAAAGCGTTCACAAAACCCGCTGCCGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc < 2:1048787/138‑1 (MQ=255)
gATAGGGTTCACAAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTccc < 6:156255/140‑1 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg > 3:53638/1‑90 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 4:53638/90‑1 (MQ=255)
aTAGCGTTCACTAAAACCGATGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCAGTATATCCTGGCAAAGTGATATGACCGCATTCGGCAGCATTTcccc > 7:413042/1‑140 (MQ=255)
tAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCa < 4:240628/140‑1 (MQ=255)
gCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCa < 2:393544/138‑1 (MQ=255)
gCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 8:474699/140‑1 (MQ=255)
gCGTTAACTAAACCCGCGGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 8:601615/140‑1 (MQ=255)
cgatCACAAAACCCGCTCCCCGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATCGCCTGGCAACGTGATATGCCCGCATTCGGCAGCATTTCCCCAg < 2:1189980/135‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAg > 7:1148817/1‑60 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTg > 6:959108/1‑100 (MQ=255)
gtgaaCTAAAACCGAGTCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATATCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 2:341730/134‑1 (MQ=255)
ttCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTACGTATATCCTGGCAACGTGATATGACCGCAGTCCGCAGCATTTCCCCAGGc > 2:583156/1‑138 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGTATTTCCCCAgg > 4:59708/1‑136 (MQ=255)
aCTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcccc > 2:453035/1‑138 (MQ=255)
aCTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCAGTCGGCAGCATTTCCCCAGGCCCCta > 3:1115623/1‑140 (MQ=255)
aaaCGGTTGCAGGAAACATACGACTCCACGCAGTTGTGTTTGCAGCACTAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGTCCGCATTCGGCAGCATTTCCCCAGGCCCCTATaaa < 3:230747/140‑1 (MQ=255)
aaaCCGCGGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATaaa < 5:222672/140‑1 (MQ=255)
aaCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGAGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTTTAAAc > 3:634975/1‑140 (MQ=255)
ccGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATCTGACCGCATTCGGCGGCATTTCCCCAGGCCCCTATAAACgg > 7:164841/1‑140 (MQ=255)
cGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGt < 5:520517/140‑1 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCg > 7:475351/1‑140 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCAGTTCCCCAGGCCCCTATAAACGGTCg > 7:199831/1‑140 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCAGTTCCCCAGGCCCCTATAAACGGTCg > 5:171481/1‑140 (MQ=255)
tGCCGGAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTc < 1:718472/138‑1 (MQ=255)
gCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGCCCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGtt > 3:439045/1‑140 (MQ=255)
gCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGtt > 4:424821/1‑140 (MQ=255)
gCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCGCCTTATAGCCTTGCAACGAGATAAGACCGCATTCAGCAGCATTTCCCCAGCCCCCTATAAACGGTCGtt > 6:865240/1‑140 (MQ=255)
gCCGGAAACAAACGACTCCACGCAGTTGTGTTTGACGCAATAGCAACTGACTGATGGACCTTCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGGCg > 2:931188/1‑138 (MQ=255)
cGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAGTAGCAACTGACTGATGGACCATCt < 2:1009955/62‑1 (MQ=255)
cGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAGTAGCAACTGACTGATGGACCATCt > 1:1009955/1‑62 (MQ=255)
caaacGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATATCCTCGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCACTATAAACGGTCGTTGCttta > 2:978662/1‑136 (MQ=255)
aacGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGATg < 2:655018/138‑1 (MQ=255)
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AGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGATGGC > NZ_CP022686/2572586‑2572860
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
