Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F12 I0 R1
|
158 |
5737.7 |
7407908 |
98.3% |
7281973 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,572,721 |
A→C |
12.7% |
F186C (TTT→TGT) |
CIW80_RS12885 ← |
ROK family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,572,721 | 0 | A | C | 12.7%
| 333.7
/ 7.1
| 179 | F186C (TTT→TGT) | CIW80_RS12885 | ROK family protein |
| Reads supporting (aligned to +/- strand): ref base A (78/73); new base C (2/26); total (80/99) |
| Fisher's exact test for biased strand distribution p-value = 5.71e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 180 total aligned reads displayed.
AGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGATGGC > NZ_CP022686/2572586‑2572860
|
tggtGTTGGCTAAACCGTGCCACCTGCTGCTTGGCACAAGCATCACCACGTTGGGCCTGGGTGACAATCGCCGCAGAAGTGAGCATGTAACCAGTAATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACACACGa < 6:208389/137‑1 (MQ=255)
aGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGCGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGa > 2:668855/1‑140 (MQ=255)
cgggtGGCTAAAACGTGCAACCTGCTGCCTGGCAAATGCATCACCACGTGGTGCCTGGGTGAAAAGCGCCGCAGATGTGAGCAAGTTACCAGTCATATGTTTAACGCGTTCACTAAACCCGCTGACGGAAACACACGa < 8:312421/134‑1 (MQ=255)
gtcGAAAACGTGCCACCTGCTGCAGGGCACAAGCATCACCACGTTGTGCCAGGGTGACAAGCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTACACTAAACCCGCTGCCGCAAACAAACGACTCCACg < 3:803240/138‑1 (MQ=255)
ggCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACg > 2:788317/1‑140 (MQ=255)
ggCGAAAACGTGCCACCTGCTGCAGGGCAAAAGAATCACCAGGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGCGCAAGTTACCAGTCATCTGTTGATCGCGTTCACTAAAACCGCTGCCGGAAACACACGACTCCa < 8:677973/138‑1 (MQ=255)
cGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACg > 7:689332/1‑138 (MQ=255)
aaCGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTtg > 5:878121/1‑140 (MQ=255)
tGCCCCCTGCTGAATGGCAAAAGCTTCACCCCGGTGTGCCAGGGGGACAAGGGCCGCTGATGTGAGCAAGTTACCAGTAATGTTTTGATCGGGTTCACTAAAACCGCTGCCGTAAACACACGACTCCACGCAGTTGTGtt < 6:732660/140‑1 (MQ=255)
gctgcATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCaa > 4:527337/1‑140 (MQ=255)
ctgcGTGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAAt > 3:507832/1‑140 (MQ=255)
ccacaAGCATCACCAGGTGGTGCCCGGGTGACAATCGCCGCATAAGTGCGACAGTTACCAGTCATCTTATGATCCCGTTCACTAAACCCGCTCCCTGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAact < 5:355173/139‑1 (MQ=255)
cacaAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 5:370817/1‑140 (MQ=255)
gCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCAGCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAACCAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAActgcctga > 3:243559/1‑140 (MQ=255)
aTCACCACTTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTTATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATg < 2:557062/140‑1 (MQ=255)
aTCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAActgactga > 8:158014/1‑138 (MQ=255)
aTCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATg < 2:943873/140‑1 (MQ=255)
accctgTTGTGCCCGGGTGACAATCTCCTCCTAAGTTACCAAGTTACCAGTCATATGTATATCGCGTTAACTAAAACCGCGGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 6:382521/135‑1 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATgg > 7:524906/1‑138 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTTTTTGCCGCAATAGCAACTGACTGATGGAc > 4:334012/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCACCTGACTGATGGAc > 2:37833/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATggcc > 5:712631/1‑138 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 5:407075/1‑140 (MQ=255)
accacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 1:685227/1‑140 (MQ=255)
acacctttGTTCAAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCCTCTGTTGATAGCGTTCACTAAAACCGATGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 6:382522/134‑1 (MQ=255)
cccGTTGTGCCTGGGTTACAAGCGCCGCATAAGTGAGCTAGTTACCAGTCATCTGTTGATAGCGTTCAAAAAACCCGCGGCGGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 6:135370/138‑1 (MQ=255)
cacGTTGTGCCTGGGGGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCAATAAACCCGCTGCCGCAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 1:414409/140‑1 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 8:22785/1‑138 (MQ=255)
tgtgCCTGGGTGACAAGCGCCGCCTACGTGCTCACGTTCCCCGTCCGCTGTTGATAGCGTTCAATAAACCCGCTGCCGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 2:531799/140‑1 (MQ=255)
tgtgCCAGGGTGACAAGCCCGGCAGAAGTGAGCAAGTAACAAGTCAGCTGTTTATAGCTTTCACTAAACCCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 1:412726/140‑1 (MQ=255)
ggtgCCAGGGTGACACTCGCCGCAGAACTGACCCAGGTCCCTGTACTCTGTTTATCGCTGCCATAAACCCCGCTGCCGCAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTc < 1:121229/139‑1 (MQ=255)
gCCTGGGTTACAATCGCCGACTACGTGATCAATTAACCATTATTCTTTTTATTGGTTTCAATAAAACCGCTGCCGTAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 3:268030/140‑1 (MQ=255)
gCCTGGGTGACAATCGCCGCAGAAGTGAGCATGTTACAAGTCATCTGTTGATAGCGTTCCCTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 4:75765/140‑1 (MQ=255)
gCCAGGGTTACAATCGCCGCAGAAGTGAGCAATTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCGGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 6:49954/140‑1 (MQ=255)
gCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCCGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 4:672721/140‑1 (MQ=255)
gCCAGGGTGAAAATCGCCGCAGAAGTGAGCAAGTTACCAGTAATCTGTTTATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 4:69717/140‑1 (MQ=255)
ccAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCt > 7:290650/1‑138 (MQ=255)
ctggggtaCAAACGCCCCATAAGGGCGCACTTTACCAGTCATCTGGTGATAGCGTTCAAAAAACCCGCGGCCGCAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 1:383675/133‑1 (MQ=255)
cAGGGTGACAATCGCCGCAGAAGTTAGCACGTTACCAGTCATCTGTGTATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 4:652479/140‑1 (MQ=255)
cAGGGTGACAATCGCCGCAGAAGTGAGCACGTAACCAGTCATCTGTTGATAGCTTTCACTAAACCCGCTGCCGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 8:34214/138‑1 (MQ=255)
cAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCCCTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 4:815608/140‑1 (MQ=255)
cAGGGTGACAATCGCCGCAGAAGTGAGAAAGTTACCAGGCATCTTTTTATAGCGTTCACTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 2:323250/140‑1 (MQ=255)
cAGGGTGACAATCGCCGCAGAAGTCAGCAAGTTCCCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAACCAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 2:765777/140‑1 (MQ=255)
cAGGGTCACAATCGCCGACTAAGTGAGCAAGTAACCAGTCATCTGTTTATAGTGTTAACTAAACCCGCTCCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 1:341412/140‑1 (MQ=255)
gggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAGCAGCTGCCGGAAACAAACGACTCCACGCAGTTTTGTGTGACGCAATAGCAACTGACTGATGGCCCATCTTCCTGCTcg > 2:255492/1‑139 (MQ=255)
ggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCACTAGCAACTGACTGATGGTCCATCTTCCTGCTCCg > 3:296989/1‑140 (MQ=255)
ggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCg > 1:21217/1‑140 (MQ=255)
ggACAATCGCCGCCGACGTCCGCAAGTAACCCGTCATCTGTTGATCGCGTGCACTCAACCCCCTGCCGCAACCAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGta < 3:204244/139‑1 (MQ=255)
aCAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACACACGACTCAACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata > 1:89396/1‑140 (MQ=255)
aaTCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata > 7:800877/1‑138 (MQ=255)
aaTCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata > 8:329843/1‑138 (MQ=255)
aaTCGCCGAAGATGTTAGCATTTTACCAGTAATGTTTTGATAGCGTGCACTAAACCCGATGACGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGtata < 8:840835/138‑1 (MQ=255)
ccgcAGAAGTTAGCAAGTAACCAGTCATATGTTTATAGCGATCACTAAACCCGCGGCCGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc < 4:275206/140‑1 (MQ=255)
ccgcAGAAGTGTGCAATTTCCCTGTCATCTGTTGATAGCTTTCACTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc < 1:791128/140‑1 (MQ=255)
ccgcAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc > 1:543867/1‑140 (MQ=255)
gcAGACGTGAGCAAGTTACCAGTCTTCTGTTGTTTGCGTTCACTAAAACCGCTGCCGCAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCaa < 4:72714/140‑1 (MQ=255)
gcAGAAGTTAGAAAGTTACCAGTCATCTGTTGATAGCGTTCAATAAAACCGCGCCCGGAACCAAACGACTCCACGCAGTTGTGTTTGCCGCAATCGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCaa < 6:878406/140‑1 (MQ=255)
aGTGAGCAAGTAACCAGTCATCTGTTGATAGCGTACACTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGa < 6:900318/140‑1 (MQ=255)
ttaGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGata < 4:405881/138‑1 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGGATAGCCTGGCAACGTGAGATg > 2:33326/1‑140 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGAATCCACGCAGTTGAGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCGCCGTATAGCCTGGCAACGGGATATg > 6:110402/1‑140 (MQ=255)
gCAAGTTACCAGACATCTTTTTATTGAGTGACATAAAACGGCTGCCGTAAACAAACGACTCCACGCAGTTGTGGTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGatat < 8:615800/138‑1 (MQ=255)
ccAAGTTACCATTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGatat < 8:237340/137‑1 (MQ=255)
aGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGGTGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGAc > 8:817528/1‑138 (MQ=255)
gTCATCTGTTCATCGCGTTCAATAAAACCGCGGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCg < 8:689332/138‑1 (MQ=255)
tCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACAATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcc > 3:380970/1‑139 (MQ=255)
aTCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc > 4:560660/1‑140 (MQ=255)
aTCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc > 5:272533/1‑140 (MQ=255)
tCTGTTGATCCCTTTCACAAAAACCGCGGCCGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagca < 3:314648/140‑1 (MQ=255)
gcTGTTGATCGCGTCCACTAAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagca < 3:714774/139‑1 (MQ=255)
ctggtcaTAGCGGTCACTAAACCCGCTCCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCTCATTCGGCAGCAt < 6:836302/134‑1 (MQ=255)
cTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCGTCCTGCTCCGTATAGCCTGGCACCGTGATATGACCGCATTCGgcagc > 7:119605/1‑138 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACTTGATATGCCCGCATTCGGCAGCATTTaccc > 5:175790/1‑140 (MQ=255)
aTAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTcccc > 6:126170/1‑140 (MQ=255)
aGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAg > 5:572111/1‑140 (MQ=255)
gggTTCACTTAAACCGCTGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCAGCTTCCTGCTCCGTATAGCCTGGCTACGTGTTATGACCGCATTCGGCAGCATTTCCCCAgt < 2:895740/138‑2 (MQ=255)
gCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 2:685227/140‑1 (MQ=255)
gggtCACTAAACCCGCGGCCGGAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc < 3:864120/137‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCaa < 7:233338/63‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc > 1:763327/1‑140 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGACAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg > 2:667565/1‑139 (MQ=255)
tatCAATAAAACCGCTGCCGTAAAAAAACGACTCCACGCTGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcc < 1:96768/138‑1 (MQ=255)
gtacaaaaaacCCGCGTCCGGAAAAACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcc < 1:100671/133‑1 (MQ=255)
ttCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCGTGGCAACGTGATATGACAGCATTCGGCAGCATTTCCCCAGGc > 7:420633/1‑138 (MQ=255)
ttCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc > 7:332172/1‑138 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcccc > 1:734975/1‑140 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTACTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcccc > 3:161529/1‑140 (MQ=255)
aCTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCta > 5:379232/1‑140 (MQ=255)
cTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCAGGCAACGAGATATGACCGCATTCGGCACCATTTCCCCAGGCCCCtat > 4:472149/1‑140 (MQ=255)
cacccGCAGCCGTAAAGACACGACTCCACGCTGTTGTGTTTGCCGCAATCCAAACTGACTGATGGACCATCTTCCTGCTCAGTATAGCCTCGCAACGTGATATGACCGGATTCGGCATCATTTCCCCAGGCCCCtata < 7:871592/135‑1 (MQ=255)
aaaCCGCTGCCGGAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCtata < 7:329843/138‑1 (MQ=255)
ctgctgGAAACAAACGACTCCACGCAGTGGTGTTTGCCGCAATAGCATCTGACTGAGGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGt < 8:506227/138‑1 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGCCCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCg > 4:616123/1‑140 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCCGGCCCCTATAAACGGTCg > 2:724786/1‑140 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATaaa > 4:127465/1‑134 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATaaa < 3:127465/134‑1 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCg > 4:43749/1‑140 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCg > 4:934466/1‑140 (MQ=255)
cTGCCGGAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCg < 6:540577/140‑1 (MQ=255)
cGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGATCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCGGCATTTCCCCAGGCCCCTATAAAcgttcgtt > 8:761416/1‑138 (MQ=255)
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AGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGATGGC > NZ_CP022686/2572586‑2572860
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
