Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,371,081 |
C→A |
14.4% |
P32Q (CCA→CAA) |
bamD → |
outer membrane protein assembly factor BamD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,371,081 | 0 | C | A | 14.4%
| 444.6
/ 12.6
| 204 | P32Q (CCA→CAA) | bamD | outer membrane protein assembly factor BamD |
| Reads supporting (aligned to +/- strand): ref base C (115/52); new base A (3/33); total (118/86) |
| Fisher's exact test for biased strand distribution p-value = 9.61e-12 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 210 total aligned reads displayed.
CAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCC > NZ_CP022686/1370944‑1371220
|
agcgaATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGGCAAAGGAAGAAGTACCTGATAATCCGCCa < 3:130239/135‑1 (MQ=255)
agagAACCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCGCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCaaa < 7:1223525/140‑1 (MQ=255)
gagaATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAACGGAAGAAGTACCTGATAATCCGCCAAAt < 5:967134/140‑1 (MQ=255)
aaTCTCCCGTATTACATTTTGAGGTTAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGAAGCCGCCACAGTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAAACCGCCAAATGaa > 2:1353253/1‑140 (MQ=255)
aaTCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGaa > 6:120534/1‑140 (MQ=255)
tctcCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAATTGAAAt > 2:759302/1‑140 (MQ=255)
tctcCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGaa > 3:603373/1‑138 (MQ=255)
cccGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTa > 2:866845/1‑140 (MQ=255)
cccGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGAGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCTGGGTCAAAGGAAGAACTACCTGATAATACGCCAAATGAAATTTa > 7:255726/1‑140 (MQ=255)
aTTAAATTTTGAGGAAAGTCAAACCGTCTTGACGCGCATGAAATATCTGGTGGCAGCCGCCACAATAAGCCTGTTTTTGGCGGGTTGCGCGGTGTAAAAGCAATAAGTACCTTATAATCCGCAAAATTAAATTTACGCGa < 2:600683/140‑1 (MQ=255)
cATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGc > 5:938806/1‑140 (MQ=255)
tGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCacaac > 6:979232/1‑140 (MQ=255)
gcggAAAGGCAAAACGTCATGACGCGCATTAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCacaaca < 8:10714/138‑1 (MQ=255)
aGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCacaac > 3:188519/1‑138 (MQ=255)
aGTCAACACGTCATGACGCGCATGAAATATCTGGTGGCAGCAGCCACACTACGCCTGTTTATGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAAGCCGCCAAATGAAATTAACGCGACTGCACAACAAAAgat > 8:592217/1‑138 (MQ=255)
aGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGAGGCTTGCTCGGGGTCAAAGCAAGAAGTACCTGATAATCCGCAAAATGAAATATACGCGCCTGCACAACAAAAGcg > 6:425949/1‑139 (MQ=255)
ccGTCATCACCCGCAGTAAATATCTGGGGGCAGCCCCCAAACTCAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGTACTTAGTCCCTCATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGAc < 8:546824/139‑1 (MQ=255)
gcATGACGCGCATTAAATATCGGGTGCCCGCCGCAAAACTACGCCTGTTTTTGGGGGGTTGCGCGGGGTCAACGCACTAAGAACCTCAAAATCCGCAAAATTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGt < 6:373288/139‑1 (MQ=255)
cATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGCCGGTa > 8:302113/1‑140 (MQ=255)
cATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGtt > 2:1125120/1‑139 (MQ=255)
aTGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTCCCTGATAATCCGCCAAATGAAATTTACTCGACTGCACAACAAAAGCTGCAGGACGGTaa > 1:1273517/1‑140 (MQ=255)
aTGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTaa > 7:545820/1‑140 (MQ=255)
aTGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTaa > 5:661195/1‑140 (MQ=255)
aTGACGCGCATGAAATATCTGGTGGCAGCCGCCACACGAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTaa > 8:750149/1‑140 (MQ=255)
tGACGCGCATTAATTATCTGGTGGCAGCCGCCACACTAAGCGTGTTTTGGGCGGGTTGGTGGGGGTCAAAGGAACAAGTACCTTAAAATCCGCAAAATTAAATTACCGCGACTGCACAACAAAAGCTGCAGGACGGTAAc < 2:688850/140‑1 (MQ=255)
tGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTa > 4:120490/1‑138 (MQ=255)
gaggcgcTTGAAATATCTGGTGGCCGCCGCAACAATAAGCCTTTTTTTGGGGGGTTGCGCGGGGTCAATGCAAGAAGTACCTGAAAATCCGCCAAATTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTaa < 4:1304461/135‑1 (MQ=255)
gACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGTCTGGTTGCTCGGGGTCAAAGGAAGAATAACCTGATAATACGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGTTaa > 4:759001/1‑138 (MQ=255)
gctttaaaTAGCTGGGGGCCGCGGCCAAACTAAGCCTGTTTTGGGCGGGTTGCTGGGGGTCAAAGGCAGAAGTCCCTGATAATCCCCAAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGgaga < 8:1003567/135‑1 (MQ=255)
gcATGAATTTTCTTGAGCCACCCCCCACACTAAGCCTGTTTTGGGCGGGTGGCGCGGGGACAAAGGAATACGTACCTTATAATCCGCCAATTGAAATTGACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGgaga < 5:532449/140‑1 (MQ=255)
gcATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGTAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGgaga < 2:1302348/140‑1 (MQ=255)
gcATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTCCCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGgaga > 7:718888/1‑140 (MQ=255)
cATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGAc > 1:157451/1‑140 (MQ=255)
cATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGAc > 6:995333/1‑140 (MQ=255)
attaaaTATCTGGTGCCAGCCGCCACACTACGCGGTTTTTGGGCGGGTTGCGCGGGGTCAAAGCAAGAAGAACCTGAAAACCCCCCAAATGAAATTTCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACa < 5:882662/137‑1 (MQ=255)
aaaTTTCTGGGGGGAGCCGCCAATCTAAGCTTGGTTTGGGCGGGTTGCTCGGGGTAAACGGACGAAGTACCTGATACTCCCCCAATTTAATTTTCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAg < 3:730309/138‑1 (MQ=255)
ttggAAGCCGACACACAAAGCATGTTTTTGGCGTGTTGCACGGTGTAAAAGGAATAATTACCTGATAATAATACAAATTAAATTTAAGCGACTGCACAACAAAAGCAGCTGGAAGGTAAATGGAGACAGCAAATAAAGCa > 6:135071/2‑140 (MQ=255)
gtggCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACTCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCa > 6:325795/1‑140 (MQ=255)
gtggCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGCCGGTAACTGGAGACAGGCAATAACGcc > 7:1177119/1‑139 (MQ=255)
ggCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGAACAACAAAAGCTGCAGGACGGTAACATGAGACAGGCAATAACGcc > 3:1012772/1‑137 (MQ=255)
cAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTg > 6:908106/1‑140 (MQ=255)
cgccgccACACTAAGCCTGTTTTTGGCGGGGGGCGGGGGGGCACCGGAAGAAGAACCTGAAAATCCGCCAAATTAAATTTACGAGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTgg < 8:516964/139‑1 (MQ=255)
cgccgccAAACTAATCCTGTTTTGGGCGGGTTGCGGGGGGTCAAAGGAAGATTTACTTTATAATCCGCCAAATGAATTTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTgg < 8:191082/139‑1 (MQ=255)
cgcccccACACTACCCCTGTTTTGGGGGGGTTGGTCGGGGTCACAGCACGAATTACCTAATAAACCGCAAAATTAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTgg < 1:77746/139‑1 (MQ=255)
agcagcCACAATATGCCTGTTTGTGGGGGGCTGCGGGGGTTCAAACTACTAAGAACCTGATAATCGGCCATATTAATTTTCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTgg < 6:1013324/140‑1 (MQ=255)
aGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTgg > 8:680324/1‑140 (MQ=255)
gccgccACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGa > 1:72287/1‑140 (MQ=255)
ccccccACAATAAGCCGGTTTGTGGCGGTGTGCGGGGGGACAACGCAAAACGAACCTAATAAACCGCAAATTTAAATTACCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTg < 3:32651/134‑1 (MQ=255)
cgccACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGa > 4:59262/1‑138 (MQ=255)
gccACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGaa > 3:958414/1‑138 (MQ=255)
ccACACTTAGCCTGGATTTGGCGGGGTGCTGGTGTGAAAAGTAAGAATTCACTTATAATCCCCAAAATTAAATTACCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTTGAAGCg < 7:324210/140‑1 (MQ=255)
cacaTTACGCGTTTTTTTGGCGGGTTGCTGGGGGACAAAGCAATATTTAGCTTTAAATCGGCAAATTTAATTTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGt < 1:598247/140‑1 (MQ=255)
cacaTTAAGCCGGTTTTTGGGGGGTGGCGGGGGGTAAAAGTAATAAGTACCTTTAAATCCCCAAATTTAAATATCCGCGACTGCACAACAAAATCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGt < 1:400980/140‑1 (MQ=255)
cacaCTAAGCCTGTTTTGGGGGGGTGGCGCGGGGTAAAAGGAATAATAACCTGAAAAACCCCCAAATTAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGt < 7:617880/140‑1 (MQ=255)
tttaGCGTGTTTTTGGGGGGTTGCTGGGGGTCAAAGGACTAAGAACTTTTAAATCCTAAAAATTAATTTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGa < 1:114249/137‑1 (MQ=255)
cTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGa > 1:678501/1‑140 (MQ=255)
cgCCTGTTTTTGGCGGGTTGCTCGGGGTCACAGGAATAAGTACATGATAATCCTCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATaa < 6:557631/139‑1 (MQ=255)
aGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTTCAGGCCGGTAACTGGAGACAGGCAATAACGCATCTGGAAGCGTTAGATaa > 7:935427/1‑140 (MQ=255)
gCCTGTTTTTGGCGGGTTGCTCGGGGCAAACGCAAGAACTCCCTGAAAATCCGCCAAATGAAATTTCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAAt < 2:116772/140‑1 (MQ=255)
gCCTGTTTTTGGCGGGTTGCGCGGGGCCAAAGGACCAAGTACCTGATAATCCGCCAAATGAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAAt < 6:661195/140‑1 (MQ=255)
tttttGGGGGGTTGCGCGGGGCCAACGTAAGATGACCCTGATAATCCGCCAAATGAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa < 6:802449/140‑1 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 1:1091517/1‑140 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 5:1011887/1‑140 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 8:132196/1‑140 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACATGATAATCCGCCAAATTAAATTTACGCGACTGCACAACAAAAGATGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 8:288773/1‑140 (MQ=255)
tttttGGCGGGTAGCTCGGGGTAAAAGCAACAACTACCTTAAAATCCGCCAAATTAAATTTCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa < 2:123977/140‑1 (MQ=255)
ttttGGCGGGTTGCTCGGGGTCAAAGGAATAAGAACCTGAAAATCCGCCAAATTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTAt < 5:754064/140‑1 (MQ=255)
gggggTTGGTCGGGGTAAATGGAATAAGTACCTTATAAACCTCCAATTTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGtt < 2:42062/138‑1 (MQ=255)
gCGGGTTGCTCGGGGTAAAAGGAAGAAGTCCCTGATAAACCGCAAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGtt < 8:315781/140‑1 (MQ=255)
gTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGt > 7:930994/1‑140 (MQ=255)
gTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCgc > 5:147302/1‑140 (MQ=255)
ggAATAAGAACCTTATATTCCTACAAATTATATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAgg < 2:46556/140‑1 (MQ=255)
taagaagTACCTGATAATCCGCCAAATGAAATTTCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGcagcag < 4:1261353/137‑1 (MQ=255)
caagatgTACCTTATAATCCCCCAAATGAATTTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGt < 8:1122349/139‑1 (MQ=255)
aaacaagTACCTTAAAACCCCCAAAATTAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGcagcag < 4:224493/134‑1 (MQ=255)
agaagTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGc > 5:243730/1‑140 (MQ=255)
agaagTACCTGATAATCCGACAAATGAAATTTAAGCGACTGCACAAAAAAATCTGCAGGACGGTTACTGGAGACAGGCAATAACGCAACTGGAAGCGTATGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGc > 6:608781/1‑140 (MQ=255)
gaagTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCa > 2:71906/1‑140 (MQ=255)
cgTACCTTATAAACCGCCAAATTAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGc < 1:603773/139‑1 (MQ=255)
agacccTGATAATCCGCAAATTGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGc < 7:507669/136‑1 (MQ=255)
tttaTAAACCGCCAAATAAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt < 2:451656/137‑1 (MQ=255)
gtGATAATCCGCTAAATGATATTTGCGCCACTGCACAACAAAAGCTTCAGGTCTGTAACTGTAGACAGGCAATTACTCTACTGGAAGCGTTAGTTAATCGCTATCCGTTTGGTCCGTATTCGCAGCATGTGCTGCTggtt < 6:27219/139‑3 (MQ=255)
ctcaTACTCCGCAAAATTAAAATCACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGCGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt < 1:1021831/137‑1 (MQ=255)
cTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTgg < 4:976871/138‑1 (MQ=255)
cTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt > 1:451656/1‑140 (MQ=255)
cTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt > 2:713068/1‑140 (MQ=255)
cTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt > 1:934209/1‑140 (MQ=255)
cTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGCTCCGTATTCGCAGCAGGTGCAGCTGGAt > 7:1061204/1‑140 (MQ=255)
cTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCAGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt > 1:927009/1‑140 (MQ=255)
cTGATAATCCGCAAAATTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTgg < 4:1116682/138‑1 (MQ=255)
attaTAATCCGCAAATTTAAATTTCCGCGACTCCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTgg < 3:558349/135‑1 (MQ=255)
attaTAATCCGCAAAATCAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt < 1:33952/137‑1 (MQ=255)
gATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAtct > 2:828604/1‑140 (MQ=255)
aTAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAtctc > 5:83638/1‑140 (MQ=255)
aaTCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCAt > 2:951269/1‑140 (MQ=255)
atccccAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCAt > 4:417446/5‑138 (MQ=255)
cGCCAAATGAAATTTGCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTAc > 1:1007872/1‑140 (MQ=255)
cGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCt > 3:405422/1‑138 (MQ=255)
cGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTAc > 1:14908/1‑140 (MQ=255)
ccAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCTTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTAc > 3:79291/1‑138 (MQ=255)
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CAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCC > NZ_CP022686/1370944‑1371220
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
