Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F2 I0 R1
|
233 |
6461.8 |
9239822 |
98.3% |
9082745 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,371,081 |
C→A |
18.6% |
P32Q (CCA→CAA) |
bamD → |
outer membrane protein assembly factor BamD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,371,081 | 0 | C | A | 18.6%
| 283.8
/ 14.1
| 151 | P32Q (CCA→CAA) | bamD | outer membrane protein assembly factor BamD |
| Reads supporting (aligned to +/- strand): ref base C (91/27); new base A (2/31); total (93/58) |
| Fisher's exact test for biased strand distribution p-value = 5.39e-14 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 157 total aligned reads displayed.
AGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCC > NZ_CP022686/1370945‑1371220
|
ctagaATCTCCCGTATTACATTATGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCa < 6:1129381/136‑1 (MQ=255)
tctcCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAAt > 3:205696/1‑140 (MQ=255)
ccGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTAc > 7:1078982/1‑140 (MQ=255)
ccGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAAAATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAAtttcc > 4:436704/1‑138 (MQ=255)
gTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTAcgc > 2:241370/1‑140 (MQ=255)
gTATTACATTTTGAGGAAAGTCAAAAAGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTAc > 5:480332/1‑138 (MQ=255)
tttACATTTTGAGGAACGTCAAAACGTCATCAGGCGCTTTAAATTGGTGGTGGCAGCCGCCACACTATGCCTGTTTTTGGGGGGGTGCTGGGGGTAAAAGGAAGAAGTACCTGTTAATCCGCAAATTTAAATTTACGCGa < 4:1048809/139‑1 (MQ=255)
ttACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGAc > 2:464515/1‑140 (MQ=255)
tGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCacaac > 1:878073/1‑140 (MQ=255)
tGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCacaac > 2:19842/1‑140 (MQ=255)
tGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCacaac > 2:878184/1‑140 (MQ=255)
tGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGGCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCacaac > 3:791854/1‑140 (MQ=255)
aGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCAcaacaa > 3:665633/1‑140 (MQ=255)
gAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCTCACTAAGCCTGTTTTTGGCGGGTTTCTAGGGGTCAATGGAAGAAGTACCTGATAATCCGCAAAATGATATTTACGCGACTGCAcaacaa > 5:635419/1‑138 (MQ=255)
gAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCAcaacaa > 5:635417/1‑138 (MQ=255)
acaGTCAAAACGTCTTGCCGCGCATGAAATATCTGGTGGCAGCGCCCACACTAAGCGTGTTTTGGGGGGGGTGCTCGGGGTAACAGGATTATTCACCTTATAATCCGCCAATTTAAATTTACGCGACTGCACAACAAAAg < 8:259084/138‑1 (MQ=255)
aaaGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAAATTACGCGACTGCACAACaaaac > 2:1036287/1‑139 (MQ=255)
tCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAATCt > 6:915375/1‑138 (MQ=255)
tCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCt > 5:151932/1‑138 (MQ=255)
ccgtaaggACGCGCATTAAATTTGTGGGGGCCGCCGCCACACTACGCCTGTTTTTGGGGGGGTGCGGGGGGTAAAAGGAAGAAGTACCTGATAATCCGCAATTTGAAATTTCCGCGACTGCACAACAAAAGCTGCAGGAc < 7:68310/133‑1 (MQ=255)
cATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTCCCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCGGCAGGACGGTa > 4:229973/1‑140 (MQ=255)
cATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTa > 8:580904/1‑140 (MQ=255)
atcaCGCCCATTAAATAGCTGGGGGCCGCCGCAACAATACGCCTTTTTTTGGGGGGTTGCGGGGGGCCAAAGGAACAAGTCCCTTAAAACCCCCAAAATTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGt < 6:1073730/135‑1 (MQ=255)
cgcATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGgag > 2:1090668/1‑140 (MQ=255)
cgcATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGGGGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACACCAAAAGCTGCAGGACGTTAACTGgag > 8:505944/1‑140 (MQ=255)
cgaaTGAAATATCTGGTGGCAGCCGCCACACTAAGCGTGTTTTGGGGGGGTTGCTGGGGGCAAAAGTAATAAGTACCTTATAATCCCCAAAATTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTgg < 6:986540/135‑1 (MQ=255)
gcATTAAATATCTGGGGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGga < 5:935072/138‑1 (MQ=255)
gcATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTAACTGATAATCCGCCAAAGGAAATTTACGCGACTGCACAACAACACCAGCACGACGGTAACTGgaga > 8:141672/1‑140 (MQ=255)
ccATTAAAAATCGGGGGGCACCCGCACCACTATGCGTGTTTTGGGCGGGTGGCGCGGGGTAAACGGAAGAAGACCCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGga < 6:607318/137‑1 (MQ=255)
cATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGAc > 4:1170597/1‑140 (MQ=255)
cATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGAc > 8:783266/1‑140 (MQ=255)
atcaaaTAGCTGGTGCCCGCCGCCACACTACGCCTGTTTTTGGGGGGTGGCTCGGGGCCAACGCAAGAAGTCCCTGATAATCCGCCAAATGAAATTTCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGgaga < 6:839001/135‑1 (MQ=255)
aTGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTCCCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGgaga > 6:1050952/1‑138 (MQ=255)
atatTTGGTGGCAGCCGCAACAATATGCCTTTTTTTGGCGGGTGGCGCGGTGTCAACGTAAGAATTACCTGAAAAGCCCCCAAATTAAATTTCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCaa < 7:350654/140‑1 (MQ=255)
tggtggCAGCCTCAACACTAAGCCTGTTTTGGGCGGGTTGCTCGGGGTCAACGGAAGACGTCCCTGATAATCCGCAAAATCAAATTTCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATaa < 6:849746/138‑1 (MQ=255)
ggtggCCGCGGCCACAATAAGCCTTTTTTTGGGGGGGTGGGGGGGGACAATGTAAGAAGTACCTGATAATCCGCAAAATTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGc < 7:969044/140‑1 (MQ=255)
ggtggCCCCCGCCACAATAAGCTTTTTTTTGGGGGGTTGCGCGGGGACAAAGGAAGAACTCCCTTATACCCCGCCAAATGAAATTACCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGc < 8:269935/140‑1 (MQ=255)
gtggCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACg > 5:608555/1‑138 (MQ=255)
gtggCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCa > 7:249848/1‑140 (MQ=255)
gCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCaa > 6:331888/1‑138 (MQ=255)
gCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACt > 4:876288/1‑140 (MQ=255)
cAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTg > 3:463539/1‑140 (MQ=255)
aGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAATCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTgg > 1:760165/1‑140 (MQ=255)
aGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACt > 6:74857/1‑138 (MQ=255)
gccgccACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACACCAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTg > 5:220124/1‑138 (MQ=255)
cccgccACACTACGCGTGGTTTTGGGGGGTGGCTCGGGCGAAACGGAACACCTACATCAAAACCCGCAAATTTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTg < 5:595640/137‑1 (MQ=255)
cacaCTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGCAAGAAGTCCATGATAATCCTCAAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGTAAGCGt < 4:655096/140‑1 (MQ=255)
caaacTAACCATTTTTTTGGGGGGTTTCTCGGGTGCTACGGAATATTTACTTGAAATTCCGCAAAATCAATTTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGt < 8:728441/137‑1 (MQ=255)
aGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATaa > 1:797758/1‑140 (MQ=255)
aGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATaa > 1:537221/1‑140 (MQ=255)
aGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGAAATAACGCAACTGGAAGCGTTAGATaa > 1:204804/1‑140 (MQ=255)
gCCTGTATTGGGCGGGTGGCCCGGGGTCAAAGCAATAAGTACCTCAAAATCCGCCAAATTATATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATa < 6:280915/138‑1 (MQ=255)
ccTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATaa > 6:930718/1‑138 (MQ=255)
ccTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATaa > 6:593836/1‑138 (MQ=255)
tGTTTTTGGGGGGTGGGGCGGGGTAAATGTAATAATAACCTTATAATCCCACAAATGAATTTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATc < 5:426934/138‑1 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTaa < 3:452470/95‑1 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTACCTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 4:474272/1‑140 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 7:376635/1‑140 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 1:934897/1‑140 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 1:1013106/1‑140 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGAGTTAGATAATCGATa > 1:545860/1‑140 (MQ=255)
tttttGGCGGGTTGCTCGGGGTAAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGATGCAGGACGGTAAATGGAGAACTGCAAAAACGAAAATGGAAGCGTTAGATAATCGCTa > 8:704063/1‑140 (MQ=255)
tttttGGCGGGTTGCTCGCGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTACCTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 1:1057587/1‑140 (MQ=255)
ttttgGGCGGGTTGCTCGGGGTCAAAGGAAGACGTACCTTATATTCCGCAAAATTAATTTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa < 2:1183294/140‑1 (MQ=255)
tttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 6:327837/1‑138 (MQ=255)
tttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 5:117710/1‑138 (MQ=255)
tttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 5:1032456/1‑138 (MQ=255)
tttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 5:103126/1‑138 (MQ=255)
tGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCg > 1:784614/1‑140 (MQ=255)
ggggTTGCTCGGGGTCAATGTAATAAGTACCTTATAATCCGCAAAATGAAATTTACGCGACTGCACAACAACAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGttt < 4:1101211/139‑1 (MQ=255)
ggTTGCTCGGGGTCAACGGAAGATGTCCCTGATACTCCGCAAAATGAAATTTACGCGACTGCACAACAACAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTgg < 7:442263/140‑1 (MQ=255)
gTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGt > 3:675998/1‑140 (MQ=255)
gTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCAGCAAAATGAAATTTACGAGACTGAACAACAAAAGATGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCTTTAGATAATAGCTATCCGTTTGGt > 8:951331/1‑140 (MQ=255)
ttGCTGTGGGTAAAAGTATTAATTACCTGATAATCCGCCAAATTAATTTTCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTc < 1:266121/140‑1 (MQ=255)
gTCAAAGGAAGAAGTACCTGATAATCCGCCAAATTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACTGTAACTGGAGACAGGCAATAACGCAACTGGAAGCTTTAGATAATCGCTATCCGTTTGGTCCGTATTCgc > 8:626517/1‑140 (MQ=255)
gTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCgc > 4:506338/1‑140 (MQ=255)
tggAATAAGTACCTTAAAATCCCCCAAATGAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGcagcag < 7:547205/139‑1 (MQ=255)
cgTACCTTATATTCCGCAAAATTAAATTTACGCGACTGCACAACAAAAGCTGGAGGACGGTAACTGGAGACTGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGc < 4:454454/139‑1 (MQ=255)
gTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTATATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCt > 2:760171/1‑140 (MQ=255)
aCCTGTTAATCGGCAAAATTAATTATACGAGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCTATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCt < 6:108672/138‑1 (MQ=255)
gttaTAACCCCCAAATTGAAATGTCCGCGACTGCACAACAAACGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTgg < 6:1118734/135‑1 (MQ=255)
cttaTAATCCGCCAAATGAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTgg < 5:96518/135‑1 (MQ=255)
cttaTAATCCGCAAAATTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt < 2:22584/137‑1 (MQ=255)
cTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt > 8:163200/1‑140 (MQ=255)
cTGATAATCCGCCAAAGGAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt < 4:824493/140‑1 (MQ=255)
cTGAAAAACCGCAAAATTAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTgg < 5:541888/138‑1 (MQ=255)
atGATAATCCGACAAATTAAATTAACGCTACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTgg < 6:879512/137‑1 (MQ=255)
tGATAATCCGCCAAATGAAATTTACGCTACTGCACAACAAAAGCTCCAGGACGGTAACAGGAGACATTCAATAACGCAACTGGAAGCGTTACATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTCCAGCTGGAtc > 7:251361/1‑140 (MQ=255)
tGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAtc > 7:1084941/1‑140 (MQ=255)
aTCCGCCAAATGAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGATATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATc < 8:36430/140‑1 (MQ=255)
tCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCt > 3:344955/1‑140 (MQ=255)
tCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCt > 4:1039438/1‑140 (MQ=255)
tCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCt > 2:420584/1‑140 (MQ=255)
tCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCt > 4:297188/1‑140 (MQ=255)
tCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCt > 2:1146620/1‑140 (MQ=255)
tCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCt > 4:731685/1‑140 (MQ=255)
cGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCt > 6:573591/1‑138 (MQ=255)
cGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTAc > 3:1109450/1‑140 (MQ=255)
ccAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGAc > 7:97512/1‑42 (MQ=255)
ccAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTAc > 5:218206/1‑138 (MQ=255)
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AGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCC > NZ_CP022686/1370945‑1371220
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
