Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F2 I0 R1
|
117 |
5184.3 |
6857682 |
98.3% |
6741101 |
135.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,814,990 |
T→G |
16.2% |
F71V (TTT→GTT) |
CIW80_RS24295 → |
phage tail protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,814,990 | 0 | T | G | 16.2%
| 284.2
/ 7.2
| 166 | F71V (TTT→GTT) | CIW80_RS24295 | phage tail protein |
| Reads supporting (aligned to +/- strand): ref base T (38/94); new base G (25/7); total (65/101) |
| Fisher's exact test for biased strand distribution p-value = 4.39e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 168 total aligned reads displayed.
TTGGTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCAGGA > NZ_CP022686/4814853‑4815128
|
ttGGTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGGGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCttt < 3:326952/140‑1 (MQ=255)
tGGTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCCCGGGGGCTGGAAGGCCtt > 8:525622/1‑138 (MQ=255)
tGGCTATACCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGa < 5:533499/140‑1 (MQ=255)
ggCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCGTTCCGTgg > 7:747970/1‑138 (MQ=255)
gcaaTTCCCTGCGTGCGCCTGCCGGGCTTAACGCTGACCTGAAATCGTACAGCGTGACGCTGTCTGTCTCCGGTGAGGAGGCAACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGa < 1:399115/135‑1 (MQ=255)
gCTATTCCCCGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCGGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 5:375215/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGa < 7:656232/138‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGa < 2:888396/138‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 3:385389/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCGGCCGGGCGGAACGCTGACCTGAACACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCGGGAGTCGGTTCTGGCTGAGCAGGGTGGCTGGAAGGCCTTTCTGTGGa < 1:644094/138‑1 (MQ=255)
cTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGGTGAGCACGGGGGGGGGAAGGGCGTTCTgggggc > 1:114566/1‑136 (MQ=255)
tATTCCTAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTTGCAGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcc > 1:24894/1‑137 (MQ=255)
cccAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCGGGCTGAGCCCGGGGGCTGGGAGGCCGGTATGTGGTcgccgg > 7:179503/1‑137 (MQ=255)
cAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCt < 2:158764/138‑1 (MQ=255)
cAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTa < 5:221925/140‑1 (MQ=255)
cAGCGTGAGCCCGCCGGGCTGAACGCGTACCTCAAAACTTACCGCCTTACGCTGTCTGACTCCCGCTACGAGGCCACCGCGCTGGAGTCGTTTATGTCGGAGCACGGGGTCTGGAAGGCCTTTCTGTGGACGCCGCCt < 8:492958/138‑1 (MQ=255)
aGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGAAGCTGTCTGTCTCCAGTGAGTAGGCCAAGGCGCTGGAGTAGTTTATGGCTGAGCACGGGGGGTGGTAGTCATTTGTGTGGTCGCCGACGTAt > 4:214936/1‑140 (MQ=255)
cGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCTGGAGGAGGCCACGGCGCTGGAGTGGTGGATGGGTGAGCCAGGGGGGTGGAGTGGCGTGGGGTGGACgccgccggtttg > 3:882/1‑134 (MQ=255)
cGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGGTGCGCACGGGGGCTGGAAGGCCTTTCTGTGGGCGCCGGCTTAt > 8:619443/1‑138 (MQ=255)
cGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTGTGGGTGAGCACGGGGGCGGGAAGGGCGTTGTGTGGACGCCGCCTTAt > 1:506158/1‑138 (MQ=255)
cGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGGTGCGCCCGGGGGCGGGAAGGGCGTTCTGTGGCCGCCGCCGTAt > 7:572270/1‑138 (MQ=255)
gTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCGCGGCGCTGGAGTCGTGTCTGGCTGAGCACGGGGGCGGGCAGGGCGTTAAGTGGGCgcccccgaatg > 7:414397/1‑133 (MQ=255)
tGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTGTGGCTGAGGCCGGGGGGTGGGAGGCCTTTCTGTGGACGCCGCCGTAttg > 7:773847/1‑136 (MQ=255)
gcgcCTGCCGGTCTGAACGCTGACCTGAAAACGTACAGCGTGACGCGGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGGCGTTGCTGGCTGAGCACGGGGGCTGGACGGCCTTTCTGTGGACGCCGCCTTATGGTTa < 6:606171/140‑1 (MQ=255)
gcgcCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTa < 4:203252/140‑1 (MQ=255)
gcgcCGGCCGGGCTGAACGCTGACATGAAAACGTACCGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCGGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGt < 2:51602/138‑1 (MQ=255)
cgcCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTGTGGCTGGGCACGGGGGGTGGAAGGCCTTTCTGTGGCCGCCGCCGTATGGtgaa > 5:805161/1‑137 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCTTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAg < 4:637930/140‑1 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTAc < 2:771193/138‑1 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAg < 5:692701/140‑1 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAg < 4:870601/140‑1 (MQ=255)
cTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACa < 8:710746/138‑1 (MQ=255)
cTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACa < 1:458546/138‑1 (MQ=255)
cTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAgg < 6:808259/140‑1 (MQ=255)
cGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCTCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGa < 3:647823/140‑1 (MQ=255)
cGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCGGCGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCa < 7:144363/138‑1 (MQ=255)
cGGGCTGAACGCGGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCGCGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGa < 6:362542/140‑1 (MQ=255)
gggCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTGTGGCTGAGGACGGGGGCTGGAAGGCCTTTCTGTGGTCGCCGCCGGATGGTTACAGGCac > 1:566895/1‑137 (MQ=255)
gCTGACCTGAAAACGTACTGCGGGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGGCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGAc < 4:443202/140‑1 (MQ=255)
gACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTg < 5:767975/140‑1 (MQ=255)
aaCGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCGTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCaaa > 2:580136/1‑138 (MQ=255)
gTACCGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGgt < 6:746749/140‑1 (MQ=255)
gTACAGCGTGACGCTGTCTGGCTCCCGTGGGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCGTTTCTGTGGACGCCGCCTTATGGTGTCAGGCAGATAACGGTGACCTGCGCAAAATGgt < 5:461459/140‑1 (MQ=255)
aCAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTGTGGCTGAGCCCGGGGGGTGGGAGGCCTTTCTGTGGGCGCCGCCTTTTGGGTTCAGGCAGCTTAAGGTGCCCGGCGCAAAATGgtcg > 3:73728/1‑140 (MQ=255)
aCAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCCGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGGAGGCCGTTGTGTGGGCGCCGCCGTATGGTTACAGGCAGTTAAAGGTGTCCTGCGCAAAATTgtgg > 5:658075/1‑138 (MQ=255)
cgCGAGACGCGGGCTGGCTCCCGTGAGGAGGCCACGGCGCTGGCGTCGTTTCTGGCTGAGCCCGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGgtcg < 1:222416/137‑1 (MQ=255)
aGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTGTGGCTGAGGACGGGGGCTGGCAGGCCGTTCTGTGGGCGCCGCCTGATGGTTACAGGCAGATAAAGGTGACCTGCGCCAAATTgtcg > 2:289337/1‑138 (MQ=255)
gCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGGTGAGCACGGGGGCTGGTAGGCCTTTCTGTGGCCGCCGCCTTATGGTTACAGGCAGATAAAGGTGCCCTGCGCAAAATGGtcgtcg > 3:630547/1‑140 (MQ=255)
gCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCGGAGCACGGGGGCTGGAAGGCCTTTCTGTGGGCGCCGCCTTATGGTTTAAGGCAGATAAAGGTGACCAGCGCAAAATGGtggtcg > 6:203295/1‑140 (MQ=255)
gCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTATAAGGCTGCGCCCGGGGGCAGGAAGGCCGTTGGGTGGAGGCCCGCGTTTGGTAAAAGGGGGATATACGTGACCGGCGCAAAATGgtgatcg > 4:687235/1‑135 (MQ=255)
gCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCGGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGtagtcg < 4:415168/140‑1 (MQ=255)
cGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTATGGGTGTGCACGGGGGCTGGTAGGCCTTTCTGTGGGCCCCCCCGAATGGTTACAAGCAGATAAATGTGACCTGCGCAAAATGTTCGTcgc > 3:512152/1‑140 (MQ=255)
gggACGCTGTCTGTCTCCCGGGAGGAGGCCACGGCGCTGGAGGCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTcgcg < 5:816635/138‑1 (MQ=255)
gTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTGTGGCTGAGCACGGGGGCGGGCAGGCCTTTATTGGGACGCCGCCTTATGGGGTCAGGGATAAAATGGTGACCGGCGCAAAAGGGtcgtcg > 1:508325/1‑138 (MQ=255)
gTGACGCTGTCTGTCTCACTGGAGGATGCCACGGCGCTGGAGGCGGTGCTGGCTTAGCACGGGGGATGGAAGGCCTTTCTGTGGACGACGCCTTATGGTTACAGGCATATAAAGGTGCCCTGCGCAAAATGGTCGTcgcg < 3:51617/140‑1 (MQ=255)
gTGACGCTGTCTGGCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCGGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGGcgcg < 3:856274/140‑1 (MQ=255)
gTGACGCGGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTcgcg < 3:503384/140‑1 (MQ=255)
gACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGGTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCggg < 5:570255/140‑1 (MQ=255)
aCGCTGTCTGGCTCCCGTGAGGAGGCCACGGCGCTGGAGGCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCgg < 2:534460/138‑1 (MQ=255)
cGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTGCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTc < 6:553076/140‑1 (MQ=255)
tctgtctCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGt > 2:883702/1‑138 (MQ=255)
tgtctCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGGTGAGCACGGGGGCTGGCAGGCCTTTCTGTGGACGCCGCCGTATGGTTACAGGCAGATTAAGGTGACCTGCGCAAAATGGTCGGCGCGGGTCAGTAt > 2:617420/1‑138 (MQ=255)
gtctCCCGTGGGGAGGCCACGGCGCGGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCGTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgct < 6:509774/140‑1 (MQ=255)
gtctCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgct < 6:515821/140‑1 (MQ=255)
gtctCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgct < 6:139309/140‑1 (MQ=255)
gtctCCCGGGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGCGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGGGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtg < 2:71323/138‑1 (MQ=255)
gtatcCCGTGAGGAGGCCACGGCGCTTGATTCGTTTCTTGCTGAGCACGGGGGCTGTAAGGCCTTTCTGTGTACGCCGCCTTATGGTTACATGCAGATAAAGGTGACCTGCGCAAAATTGTCGTCGCGGGTCAGTAtgct < 3:35943/137‑1 (MQ=255)
ctcCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgct < 1:163245/138‑1 (MQ=255)
gTGAGGAGGCCACGGCGCTGGAGTCGTTTGTGGCTGAGCACGGGGGCGGGCAGGGCGTTGTGTGGACGCCGCCGTATGGTTACAGGCAGATAAAGGTGAACAGCGCAAAATGGTAGTCGCGGGTCAGTATGAGGCGGGtt > 4:312461/1‑140 (MQ=255)
gTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGACGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGAGGGTCAGTATGCTGCgtg < 7:295800/138‑1 (MQ=255)
gTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCgtg < 7:619443/138‑1 (MQ=255)
gTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCgtg < 1:252037/138‑1 (MQ=255)
gTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGtt < 6:35333/140‑1 (MQ=255)
gTGAGGAGGCCACGGCGCTGGAGTCGTTTATGGCTGAGCACGGGGGCTGGAAGGCCGTTCTGTGGTCGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCATTATGCTGCGTGtt > 4:186723/1‑140 (MQ=255)
gaggCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAg < 1:883702/138‑1 (MQ=255)
gCCACGGCGCTGGAGTCGTGTCTGGCTGAGCACGGGGGGTGGAAGGCCGTTATGTGGACGCCGCCGTATGGTTACAGGCAGATAAAGGTGAACTGCGCAAAATGGTGGTCGCGGGGCAGTATGCTGCGTGTTTTGTTCAg > 4:727401/1‑140 (MQ=255)
aCGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgcgc < 6:666305/140‑1 (MQ=255)
aCGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgc < 1:747644/138‑1 (MQ=255)
aCGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGCCAGTATGCTGCGTGTTGAGTTCAgc < 7:98423/138‑1 (MQ=255)
aCGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTGCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgcgc < 6:183226/140‑1 (MQ=255)
aCGGCGCTGGAGGCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgc < 2:327778/138‑1 (MQ=255)
aCGGCGCTGGAGGCGTTTCTGGATGAGCACGGGGGCTGGAAGGCCGTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCTCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgc < 8:290222/138‑1 (MQ=255)
gcgcTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCa < 2:506158/138‑1 (MQ=255)
cgcTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGTAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATTGTCGGCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCatag > 4:403888/1‑140 (MQ=255)
tGGAGTCGTTTATGGCGGAGCACGGGGGCTGGAAGGCCGTTCTGTTGGCCCCGCCTTATTGTTTCAGGCAGCTAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGGGTTGAGTTCAGCGCAGAGttt > 6:597765/1‑140 (MQ=255)
gTCGGTTCTGGCTGAGCACGGGGGCTGGAAGGCCGTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGa < 8:333525/138‑1 (MQ=255)
tCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCCCCGTATGGTTACAGGCAGATAAAGGTGAACTGCGCAAAAAGGTCGTAGCGGGTCAATATGCTGCGTGTTGAGTTAATCGCAGAGTTTGAACAagtgg > 4:640693/1‑140 (MQ=255)
caagggcgCTGGAAGGACTTACTGTGGACGCCGCCTAATGGTTACAGGCAGATAAAGTTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTCCGTGATGAGGTCAGCGCAGAGTTTGCACAGGTGGTGAACTgg > 1:268138/4‑137 (MQ=255)
ggggggCTGGAAGGCCGTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCa < 5:193146/139‑1 (MQ=255)
cGGGGGCTGGAAGGCCGTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATg < 7:203429/138‑1 (MQ=255)
gggCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGa > 6:517783/1‑140 (MQ=255)
ggCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGATTGAACAGGTGGTGAACTGATGCAgg > 8:407027/1‑138 (MQ=255)
cTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGatat > 3:593699/1‑140 (MQ=255)
ggAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGATGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATcc > 6:336466/1‑140 (MQ=255)
aaGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATcc > 7:459716/1‑138 (MQ=255)
aaGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCgg < 5:681119/140‑1 (MQ=255)
aaGGCCTTGCTGGGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTGCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATcc < 1:348334/138‑1 (MQ=255)
cTTTCTGTTGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCAg < 7:351243/138‑1 (MQ=255)
cTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGTTGAACTGATGCAGGATATCCGTCAGGa > 6:322978/1‑140 (MQ=255)
cTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCAGGa < 5:572167/140‑1 (MQ=255)
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TTGGTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCAGGA > NZ_CP022686/4814853‑4815128
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
