Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F2 I0 R1
|
233 |
6461.8 |
9239822 |
98.3% |
9082745 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,814,990 |
T→G |
11.2% |
F71V (TTT→GTT) |
CIW80_RS24295 → |
phage tail protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,814,990 | 0 | T | G | 11.2%
| 429.3
/ 3.2
| 218 | F71V (TTT→GTT) | CIW80_RS24295 | phage tail protein |
| Reads supporting (aligned to +/- strand): ref base T (56/124); new base G (29/3); total (91/127) |
| Fisher's exact test for biased strand distribution p-value = 1.75e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 222 total aligned reads displayed.
CTTTGGTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCAGGA > NZ_CP022686/4814851‑4815128
|
cTTTGGTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCt > 2:944748/1‑140 (MQ=255)
ttGGTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTGTGGCTGAGCACG‑GGGGCTGGAAGGCCt > 5:442635/1‑138 (MQ=255)
tGGTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGACTCCCGTGATGACGCCACGGCGCTGGAGACGTATATGGCGGAGCACC‑GGGGCTGGAACGCCtttg > 4:583850/1‑139 (MQ=255)
gTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCGGGGCACG‑GGGGGTGGACGGCCTTTcgg > 1:92268/1‑138 (MQ=255)
ggCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGATGAGGACG‑GGGGCTGTGATGCCTTTCTGTGGAc > 7:58965/1‑140 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGAcg < 1:971207/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCGCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGGTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGAcg < 4:809767/140‑1 (MQ=255)
ccTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTTACCTGAAAACGTACAGCGGGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGTAGTCGTTTCTGGCTGAGCACG‑GTGGCTGGAAGGCCTTTCTGTGTAcg < 7:1005227/139‑1 (MQ=255)
ttCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCGTGATGAGCACG‑GGGGCGTGAAGGCCTTACTGTGGCccccgc > 2:240546/1‑140 (MQ=255)
ctgCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGTAGGCCTTTCTGTGGACGCCGCCTTa < 1:377746/138‑1 (MQ=255)
cAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCt < 5:846028/138‑1 (MQ=255)
aGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTTGCTGAGCACG‑GGGGGTGGGAGGGCTTTGAGTGGCCGCCGCCTTAt > 2:265603/1‑140 (MQ=255)
gTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGAGCACG‑GGGGCTGGCAGGCCGTTCTGTGGACGCCGCCGTATGGt > 8:404387/1‑140 (MQ=255)
tGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGAGCCCG‑GGGGCTGGAAGGGCGTTCTGTGGACGCCGCCTTATgg > 6:1047589/1‑138 (MQ=255)
gcgcCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGt > 6:750922/1‑138 (MQ=255)
gcgcCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGGTTCTGGGGGAGCCCG‑GGGGGGGGAAGGCCTTTCTGTGGTCGCCGCCGTATGGttt > 4:152072/1‑139 (MQ=255)
cgcCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTATGGCTGGGCACG‑GGGGGTGGAAGGCGTTTCTGTGGGCGCCGCCTTATGGTTAc > 1:892337/1‑140 (MQ=255)
cgcCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTGTGGCGGCGCCCG‑GGGGGGGGGAGGGCGTTATGTGGGCGCCGCCGTATGGttta > 7:665123/1‑138 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAACCGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAg < 4:680099/140‑1 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGTCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAg < 4:321909/140‑1 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAg < 3:1063370/140‑1 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAg < 7:172109/140‑1 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCATTAGGTGGCCGCCGCCTTATGGTTACAg > 8:540553/1‑140 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTGTGGGGGAGCACG‑GGGGGGGGGAGGGCTTTGTGTGGACGCCGCCAGATgggttaaa > 8:416229/1‑134 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGGCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAg < 8:770352/140‑1 (MQ=255)
cTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACa < 5:1081767/138‑1 (MQ=255)
cTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAgg < 7:310681/140‑1 (MQ=255)
ggggCTGAACGCTGACATGAAAACGTACAGCGTGACGCTGGCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTTGCTGAGCACT‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGa < 8:479408/139‑1 (MQ=255)
cGGGCTGAACGCTGACCTGAAATCGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCATGGCGCTGGAGTAGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACCGGCAGa < 8:829411/140‑1 (MQ=255)
cGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGGTGTCTGTCTCCCGTGAGGAGGCCACGGCGCGGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGa < 3:48614/140‑1 (MQ=255)
cGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCa < 6:517577/138‑1 (MQ=255)
cGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCa < 5:678832/138‑1 (MQ=255)
cGGGCTGAACGCTGAACTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGa < 8:358124/140‑1 (MQ=255)
gggCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGGGGCGCACG‑GGGGCGGGGAGGCCGTTCTGTTGGCGCCGCCATATGGTTTAAGGCAg > 5:168054/1‑138 (MQ=255)
gCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCCCGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTTGACTCCGCCTTATGGTTACATGCAGATAAAtgtg < 6:725895/138‑1 (MQ=255)
ccTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGGCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGAc < 1:264534/139‑1 (MQ=255)
aCCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCTTTGCTGGCTTAGCACG‑GGGGCTGGAAGGCCGTTATGTGGTCGCCGGCATATTGTTACCGGCAGATAAACGTGACCTgg > 7:730872/1‑139 (MQ=255)
aCCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTATGGCTGAGCACG‑GGGGCTGGAAGGCCGTTATGTGGGCGCCGCCTTATGGTTACAGGCAGATTAAGGTGACCTgg > 3:1142517/1‑139 (MQ=255)
ccTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTgcg < 4:439082/140‑1 (MQ=255)
ccTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTgcg < 7:42216/140‑1 (MQ=255)
gTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCCCG‑GGGGGTGGAAGGCCTTTCTGTGGTCGCCGCCGTATGGTTACAGGCAGATAAAGGTGACCAGCGCAAAATggg > 8:1019945/1‑139 (MQ=255)
gCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGgtcgt < 6:611140/138‑1 (MQ=255)
gCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGtcgtcg < 2:831178/140‑1 (MQ=255)
gCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTGTGGGGGCGCACGCGGGGGTGG‑ACGCCGATATGTGGACGCCGCCGTATGGTGACACGCCGAAAAACGGGACCTGCGCAAAATGgtgggcg > 7:1066462/1‑135 (MQ=255)
gCGTGACGCTGTCTGGCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCGGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGtcgtcg < 1:485547/140‑1 (MQ=255)
gCGGGACGCTTTCTGTCTCCGGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCGTAGCCCG‑GGGGCTGTAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGgtcgt < 5:758726/138‑1 (MQ=255)
gTGACGCTGTCTGTCTCCCGTGCGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCTCG‑GTGGCTGGAAGGCCTTTCTGTTGACGCCGCCTTATGGTTACAGTCAGATAAATGTGACCTGCGAAAAATGGTCGTcgcg < 8:179204/140‑1 (MQ=255)
aCGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCATATGGTTAAAGGCAGATAAAGGTGACCAGCGCAAAATGGTCGGAGCGGGt > 4:502875/1‑140 (MQ=255)
aCGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCGGGAAGGCCTTTCTGTTGACGCCGCCGTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCgggg > 4:26289/1‑139 (MQ=255)
cGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTc < 4:986878/140‑1 (MQ=255)
cGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTc < 3:691987/140‑1 (MQ=255)
cGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCGGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTc < 1:1149756/140‑1 (MQ=255)
tctgtcgCGCGTGAGGAGGCCACGGCGCTGGAGGCGTTTCTGGCTGCGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTCCAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGt < 5:247782/138‑1 (MQ=255)
tgtctCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgc < 1:1024873/140‑1 (MQ=255)
tgtctCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCAGGGTGAGAACC‑GGGGCTGGAAGGCCGTTATGTGGACGCAGCCTTTAGGTTACCGTGAGATAAAGGTGACCAGCGCAAAATGGGGGTCGCGGGTctctat > 6:206499/1‑133 (MQ=255)
tgtctCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTATGGCGGCGCGCG‑GGGGCGGGAAGGCCGTTAGGTGGCCGCCGCCGTATGGTTACAGGCAGATAAATGTTACCTTCGCAAAATGGTCGGGGCGGGTGCGTAt > 5:1131071/1‑138 (MQ=255)
gtctCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATTGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgct < 7:416229/140‑1 (MQ=255)
ctcCCGTGAGTAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GTGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgct < 6:659439/138‑1 (MQ=255)
ctcCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgctgc < 1:871828/140‑1 (MQ=255)
ctcCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgctgc < 8:665123/140‑1 (MQ=255)
ctcCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTGTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgct < 6:459548/138‑1 (MQ=255)
tcCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGGCGTTCTGTGGACGCCGCGATATGGTTACAGGCACTTAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGGATGCTGCg > 4:835664/1‑140 (MQ=255)
gTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGtt < 2:384506/140‑1 (MQ=255)
gTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGAGCACG‑GGGGCGGGTAGGCCGTTCTGTGGACGCCGGCGTTTGGTTAAAGGCAGATAAAGGTGACCTGGGCAAAATGGGGGTCGCGGGGCAGTATGCGGCGTGtt > 3:750712/1‑140 (MQ=255)
ggCCACGGCGCTGGAGTCGTTTGAGGCTGAGCACG‑GGGGCTGGAAGGCCATTGTGTGGACGCCGCCGTAATGTTTCAGGCACATAAAGGTGACCTGCCCAAAATGGTCGTCGCGGCGCAATATGCGGCGTGTTgtctt > 6:314175/1‑134 (MQ=255)
cACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgcg < 2:329719/140‑1 (MQ=255)
ccGGCGCAGGAGTCGGTGCTGGCTGAGCACG‑GGGGCTGGACGGCCGTTCTGTGGCCGCCGCCGTATGGGTACAGGCAGATACCGGTGACCTGCGCAAACTGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgcgc < 7:530854/139‑1 (MQ=255)
aCGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgcgc < 2:507249/140‑1 (MQ=255)
aCGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgc < 6:48663/138‑1 (MQ=255)
aCGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGAGGGTCAGTATGCTGCGTGTTGAGTTCAgcgc < 4:940838/140‑1 (MQ=255)
aCGGAGCTGGAGTCGTTTCTGGCTGAGCACG‑GTGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgcgc < 7:284015/140‑1 (MQ=255)
tGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTATGTGGACGCCGCCTTATTGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCGGCGTGTTGAGTTCAGCGCAGAGttt > 2:555078/1‑140 (MQ=255)
gTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAAc < 3:328169/140‑1 (MQ=255)
gTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAAc < 2:274443/140‑1 (MQ=255)
gTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAAc < 4:1015812/140‑1 (MQ=255)
tCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACa < 3:169810/140‑1 (MQ=255)
gTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCGTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAgg > 4:420373/1‑140 (MQ=255)
tgtGGCTGATCACA‑GGGGCTTGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCACAAAATGGTCGTCGCGGGTCAGTATTCTGCGAGTTGAGTTCAGCCCAGAGTTTGAACAggtgg > 8:344054/3‑140 (MQ=255)
gCTGAGCACC‑GGGGCGGGAAGTCCGTTCGGTGGACGCCGCCTTATGGTTTAAGGCAGATAAAGGTTACCATCTCAAAAAGGGCGTCGCGGGTCAGAATCCTGCGGCTTTAGTTCAGCGCAGATGATGAACAGgtggtg > 6:668884/1‑138 (MQ=255)
cTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAAc < 2:173981/140‑1 (MQ=255)
aGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTc > 7:125175/1‑89 (MQ=255)
aGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTc < 8:125175/89‑1 (MQ=255)
aGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGa > 1:634618/1‑140 (MQ=255)
aGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGa > 1:612510/1‑140 (MQ=255)
aGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGa > 4:651198/1‑140 (MQ=255)
gCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGAt > 4:61969/1‑140 (MQ=255)
aCG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGCTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGGCGCGGGTCAGTATGCTGCGTGTTGAGGTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGc < 2:1148263/140‑1 (MQ=255)
cG‑GGGGCTGGACGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCATATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGAGGTGAACTGATg < 6:25074/138‑1 (MQ=255)
ggggCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAgg > 3:236753/1‑140 (MQ=255)
gCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGTTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGAAGGa > 6:921070/1‑138 (MQ=255)
gCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGtcgtcg < 6:773776/74‑1 (MQ=255)
gCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGtcgtcg > 5:773776/1‑74 (MQ=255)
cTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGAGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGatat > 8:611331/1‑140 (MQ=255)
cTGGAAGGCCTGTCGGGGGACGCCGCCGTATGGTTTCAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGCGTCAGTAAGCTGCGTGTTGAGTTCAGCGCAGAGTATGAAGAGGTGGTGAACTGATTCAGGatat > 7:825130/1‑140 (MQ=255)
gggAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAACGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGata < 5:494947/137‑1 (MQ=255)
gAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATc < 2:1062818/138‑1 (MQ=255)
gCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCAg > 7:205525/1‑140 (MQ=255)
gtttATGTGTACGGCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGGCGTCGCGGGTCTGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGTACTGATGCAGGATATCCGGCAGGa < 4:1125030/139‑1 (MQ=255)
cTTTCTGTGTACGCCGCAGTATGGTTCAAGGCAGATCAAGGTGACCTGAGCAAAATGGTCTTCGAGGGTCAGTATGCTGCGTGTTGAGTTCAGCACAGAGTTTGAACTGGTGGTGAACTGATGCAGGATATCCGGCAGGa < 2:72114/140‑1 (MQ=255)
cTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCAg > 5:312489/1‑138 (MQ=255)
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CTTTGGTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACG‑GGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCAGGA > NZ_CP022686/4814851‑4815128
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
