Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F35 I0 R1
|
195 |
10216.4 |
8585726 |
98.3% |
8439768 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,814,990 |
T→G |
12.1% |
F71V (TTT→GTT) |
CIW80_RS24295 → |
phage tail protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,814,990 | 0 | T | G | 12.1%
| 355.9
/ 5.2
| 179 | F71V (TTT→GTT) | CIW80_RS24295 | phage tail protein |
| Reads supporting (aligned to +/- strand): ref base T (34/115); new base G (21/5); total (59/120) |
| Fisher's exact test for biased strand distribution p-value = 2.34e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 180 total aligned reads displayed.
TGGTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCAGGA > NZ_CP022686/4814854‑4815128
|
gTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGACGGCCTTTcgg > 4:382204/1‑138 (MQ=255)
tGGCTATTCCCAGCGTGCGCCTGCCGGGCGGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCtgtg < 5:332712/138‑1 (MQ=255)
gCTATTCCTAGCGTGCGCCTGCCGGGCTGAACGAGGACCTGTATAAGTCCAGCGTGACGCTGTCTGTCTCCCGTTAGGAGGCAACGGCGCTGGAGTCGTTTCTTGCTGAGCTCGGTGGCTGGAATGCCTTTCTGTGGAcg < 8:364765/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAACCGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGa < 5:155634/138‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 2:437520/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 4:467897/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 7:645549/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 1:730631/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg > 2:906720/1‑140 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCGGGCGGAGCCCGGGGGGGGGAAGGCCGTTCTGTGGAcg > 1:644951/1‑140 (MQ=255)
ttCCCAGCGTGCGCCTGCCGGGCTGAAAGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCGGGAGTCGTTTATGGCTGAGCACGGGGGGGGGTAGGCGGGTCTGTGGAcgcacc > 8:632896/1‑137 (MQ=255)
cccAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGGCGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCGGAGCCCGGGGGCGGGAAGGCCTTTCTGTGGAcgccgc > 6:751864/1‑138 (MQ=255)
cAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACTTACAGCGTGACGCTGTCTGTCTCCCGGGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTa < 1:1008210/140‑1 (MQ=255)
cAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGTACGCCGCC‑TTa < 1:385675/140‑1 (MQ=255)
cAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTa < 3:179848/140‑1 (MQ=255)
cAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTa < 8:216417/140‑1 (MQ=255)
aGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGGGGACCGGGGCGGGAAGGCCATTATGTGGACGCCGCC‑atat > 1:211369/1‑140 (MQ=255)
aGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGCGGACGGGGGCGGGGAGGCCTGTGTGTGGACGCCGCC‑TTAt > 7:783262/1‑140 (MQ=255)
cGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGCGGCCGGGGGCTGGAAGGCCGTTCGGTGGACGCCGCC‑GTATgg > 2:546428/1‑140 (MQ=255)
gTGCGCCTGCCGGGCTGAACGCTGTCCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGt < 3:559491/140‑1 (MQ=255)
gTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCCCGGGGGCGGGAAGGCCTGTTTGTGGGCgccgccagattgt > 7:979273/1‑133 (MQ=255)
gTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCAGGCAGAACACGGGGGCGGGAAAGCCTATATTTTGACCCCGCC‑ATaat > 6:155634/1‑136 (MQ=255)
gTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTAGGGCTGACCACGGGGGCTGGAATGGCGTTCTGTGGGCGCCGCC‑GTATg > 5:385460/1‑138 (MQ=255)
gcgcCTGCCGGGCTGCACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCGGGAGTCGTGTCTGGCTGCGCACGGGGGGTGGAAGGCCGTTCTGTGGACGCCGCC‑GTATGGt > 6:607770/1‑138 (MQ=255)
gcCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCT‑GAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGCTACAg < 3:998910/140‑1 (MQ=255)
gcTGCGGGGCTGAACGCTGACATGATAACGTTCAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGTCTGAGCACGGGGGCTGGAAGTCCGTTCTGTGGTCGCCGCC‑TTATGGTTAc < 5:239495/137‑1 (MQ=255)
ccTGCCGGGCTGGACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAg < 4:323653/140‑1 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTAc < 5:438549/138‑1 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTAc < 6:579109/138‑1 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAg < 3:834491/140‑1 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAg < 7:884603/140‑1 (MQ=255)
cGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGa < 3:838591/140‑1 (MQ=255)
cGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGa < 3:311766/140‑1 (MQ=255)
aaCGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGt > 2:897068/1‑140 (MQ=255)
cGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGAGCACGGGGGCGGGAAGGCCTTTCTGTGGACGCCGCC‑GTATGGTTTCAGGCAGATAAAGGTGa > 7:777334/1‑140 (MQ=255)
gCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGAc < 4:352624/140‑1 (MQ=255)
gCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGAc < 4:770613/140‑1 (MQ=255)
gCTGACCTGAAAACGTACAGCGTGACGCTGTCTGGCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGAc < 1:492562/140‑1 (MQ=255)
gCTGACCTGAAAACGTACAGCGTGACGCTGTCTGGCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGAc < 2:662235/140‑1 (MQ=255)
aCCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAgg < 1:1074915/122‑1 (MQ=255)
aCCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAgg > 2:1074915/1‑122 (MQ=255)
tGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCCCGGGGGCTGGAAGGCCTTTCTGTGGCCGCCGCC‑TTATTGTTACAGTCAGATAAAGGTGAACTGGGCa > 2:762086/1‑140 (MQ=255)
gTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGTCCTGCGCAAAATGgt < 1:921483/140‑1 (MQ=255)
gTACAGAGTGACGCTGTCGGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGgt < 2:231788/140‑1 (MQ=255)
accgCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTATGGCTGCGCCCGGGGGCTTGATGGGCCTTCTGGTGGCGCCGCC‑TAATTGTTAAAAGCAGCTAAATGGTCCCATCGCAAAATGgtcg > 7:552762/4‑140 (MQ=255)
gCGTGAGGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTGTGGGGGGGCCCGGGGGGTGGGAGGCCGGTGTGTGGGCGCCGCC‑GTATTGGTTGAGGGAGGTAAAGGTGTCCGGCGGAAAATGgtggggg > 1:809227/1‑135 (MQ=255)
gCGTGACGCTGTCTGTCTCCCGTGAGGTGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGtcgtcg < 7:107163/140‑1 (MQ=255)
gCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCAGGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGtcgtcg < 8:514230/140‑1 (MQ=255)
gCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑tt > 2:673280/1‑96 (MQ=255)
gCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGgtcgt < 5:912281/138‑1 (MQ=255)
gCGTGACGCGGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGtcgtcg < 1:448580/140‑1 (MQ=255)
gtcactctgtctgaCTCCCGTCCGGAGGCCACCTCGCTGGAGTCGTTTCTGGCTGAGCTCGGGGGCTGGAAGGCCTTGCTGTGGACGCCGCC‑TTATTGTTACAGTCAGATAAAGGTGACCTGCGCAAAATGGTCGTcgcg < 8:768786/134‑1 (MQ=255)
gTGGCGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGtcgtcg < 5:751864/138‑1 (MQ=255)
gTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTcgcg < 2:950760/140‑1 (MQ=255)
gTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGAAGATAAAGGTGACCTGCGCAAAATGGtcgtcg < 6:118788/138‑1 (MQ=255)
gTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTTGCTGAGCACGGGGGGGGGGACGCCTTTATGTGGACGCCGCCATTTTGGTT‑CATGCAGATAAAGGTGACCAGCGCAAAATGgtggtcc > 6:190608/1‑137 (MQ=255)
gTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGGCGTTTCTGGCTGAGCACGGGGGCTGTAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTcgcg < 7:177976/140‑1 (MQ=255)
gTGACGCTGTCTGTCGCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGtcgtcg < 6:728400/138‑1 (MQ=255)
cGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCggg < 5:780285/138‑1 (MQ=255)
cGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTc < 8:477935/140‑1 (MQ=255)
cGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTc < 4:268998/140‑1 (MQ=255)
cGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTc < 4:208774/140‑1 (MQ=255)
cGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGGCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCggg < 6:368697/138‑1 (MQ=255)
tgtctgtcTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGt < 1:1103565/140‑1 (MQ=255)
tctgtctCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCGGGGGGCGCACGGGGGCGGGGCGGCCTGTTTGTTGCCGCCGCCGTAATGGTT‑CAGGCCCAAATATGTGACCAGCGCAAAAAGGTCGTAGCGGGTCATTAt > 2:1103565/1‑140 (MQ=255)
gtctCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgct < 8:386693/140‑1 (MQ=255)
ctcCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgctgc < 8:149492/140‑1 (MQ=255)
ctcCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgctgc < 8:805274/140‑1 (MQ=255)
ctcCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTATGGCTGAGCACGGGGGCTGGAAGGCCGTTATGTGGGCGCCCCC‑GTATTGTTAAAGGCAGATAAAGGGTACCTGCGCAAAATGGTCGTCGCGGGTCCGTAtggggg > 8:670096/1‑136 (MQ=255)
ctcCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTATGGCTGAGGCCGGGGGGGGGCAGGCCTTTAGGTGGACGCCGGC‑TTATGGGTTCAGGGAGATAAAGGTGGCCTGCGCAAAATGGTCGGCGCGGGTCAGGAtgctgc > 8:76559/1‑140 (MQ=255)
cccGTGAGGAGGCCACGGCGCTGGAGTCGTTTCT‑GCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCg < 5:651071/138‑1 (MQ=255)
gTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGGAGAGCACGGGGGCGGGAAGGGCTTTCGGTGGCCGCCGCC‑ATTAGGTTACAGGCACATAAAGGTGACCCGCGCAAAATGGTCGTCGCGGGTCAGGATTCAGCGGGtt > 2:678859/1‑140 (MQ=255)
gTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGGCGTTCTGTGGCCGCCGCC‑GTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGGCGTCGCGGGTCAGTAAGCTGCGTGtt > 3:909070/1‑140 (MQ=255)
gaggagGCCACGGCGCTGGAGTCGTGTGGGGCTGAGCCCGGGGGCGGGAAGGCCTTTGTGTGGACGCCGCC‑GTATGGTTAAAGGCAGATAAAGGTGACCTGCGCAAAATGGGAGTCGGGGGGCAGTATGCGGGGTGtt > 5:707336/1‑138 (MQ=255)
gCCACGGCGCTGGAGTCGTGTCTGGGTGAGCACGGGGGCTGGAAGGCCGTTCGGTGGGCGCCGCC‑GTTTGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGGCAGTATGCTGCGTGTTTAGTTCAg > 2:133328/1‑140 (MQ=255)
aCGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgcgc < 3:420323/140‑1 (MQ=255)
aCGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgcgc < 1:609553/140‑1 (MQ=255)
aCGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgc < 6:146925/138‑1 (MQ=255)
aCGGCGCTGGAGTCGTGTCTGGCTGAGCACGGGGGCTGGAAGGCCGTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATTAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgcgc < 1:677965/140‑1 (MQ=255)
tGGAGTCGTTTCAGGCTGCGCACGGGGGCTGGAAGGCCGTTCTGTGGACGCCGCC‑TTATGGTTACACGCAACTAAAGGTGACCTACGCAAAATTGTCGGCGCGGGGCAGTATGCTGAGTGTTGAGTTCCGCGCAGAGttg > 8:600897/1‑139 (MQ=255)
ggAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTg < 8:235640/140‑1 (MQ=255)
gTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGa < 6:454015/138‑1 (MQ=255)
gTCGTTGCTGGCTGAGCACGGGGGCTGGAAGGCCTTTATGTGGACGCCGAC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGAGGGTCAGTATGCTGAGGGTTGAGTTCAGCGCAGAGTTTGAAc < 2:283186/140‑1 (MQ=255)
cGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAg < 1:219843/140‑1 (MQ=255)
tCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAggtgg < 4:644160/140‑1 (MQ=255)
gCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGaa < 3:158594/140‑1 (MQ=255)
gCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGaa < 8:777334/140‑1 (MQ=255)
gCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGaa < 4:841608/140‑1 (MQ=255)
gCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGaa < 1:363352/140‑1 (MQ=255)
cTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAACGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAAc < 3:716848/140‑1 (MQ=255)
cTGAGCAAGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAACTGGTCGTCGCGGGGCAGTATGATGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGTTGa < 6:703596/138‑1 (MQ=255)
gcgcccGGGGGCTGGCAGCCCTTTCTGGGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGGCGTCGCGGGGCAGTATGCTGCGTGTGGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTg < 1:886932/135‑1 (MQ=255)
aGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGa > 8:336584/1‑140 (MQ=255)
aGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGa > 8:826798/1‑140 (MQ=255)
gCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTTAt > 7:577735/1‑140 (MQ=255)
gCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGAt > 3:1003002/1‑140 (MQ=255)
cACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGa > 5:1044936/1‑138 (MQ=255)
aCGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGc < 4:18589/140‑1 (MQ=255)
cGGGGGCGGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGAGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCTGAGTTTGAACAGGTGGTGAACTGATGCa < 7:136175/140‑1 (MQ=255)
cTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCa < 1:534583/71‑1 (MQ=255)
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TGGTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCC‑TTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCAGGA > NZ_CP022686/4814854‑4815128
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
