Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,814,990 |
T→G |
10.2% |
F71V (TTT→GTT) |
CIW80_RS24295 → |
phage tail protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,814,990 | 0 | T | G | 10.2%
| 375.9
/ 3.9
| 188 | F71V (TTT→GTT) | CIW80_RS24295 | phage tail protein |
| Reads supporting (aligned to +/- strand): ref base T (46/114); new base G (22/2); total (72/116) |
| Fisher's exact test for biased strand distribution p-value = 3.64e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 188 total aligned reads displayed.
TGGTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCAGGA > NZ_CP022686/4814854‑4815128
|
ggCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTATGGCTGATCACGGGGGCTGGTAGGCCTTTCTGTGGAc > 2:1215928/1‑140 (MQ=255)
ggCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTGTGGCTTGGCCCGGGGGGTGGAAGGCCGTTCTGTGGAc > 7:690433/1‑140 (MQ=255)
gctctacccAGCTTGCGCCTGCCGGGCTGAACGCTGACCTGAAAAAGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTAGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 5:951509/134‑1 (MQ=255)
gCTATTCCCAGCGTGGGCCTTCGGGGCTGAACGCGGACCTGAAAACGTACTGCGGGACGCTGTCTGGCTCCCGTGAGGAGGCCACGGCGCTGGAGGCGTATCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 7:736084/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAACCGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 7:1041331/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 7:410483/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 2:618189/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 6:279671/140‑1 (MQ=255)
gCTATTCCCAGCGGGCGCCGGCCGGGCTGAACGCGGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 2:880761/140‑1 (MQ=255)
ttCCCAGCGTGCGCCTGCCGGGCTGAACGCTGCCCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTAGGGGTGAGCTCGGGGGGTGGTAGGCCTTTCTGTGGTcgccgg > 2:840413/1‑139 (MQ=255)
ttCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGCGCACGGGGGCTGGAAGGCCTTTCTGTGGGcgccgc > 2:71696/1‑140 (MQ=255)
ttCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTGTGGCTGAGCACGGGGGCTGGTCGGCCTTTCTGTGGGcgccgc > 6:1160906/1‑140 (MQ=255)
cAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCt < 3:885611/138‑1 (MQ=255)
cAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCt < 3:1108175/138‑1 (MQ=255)
cAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTa < 7:1219869/140‑1 (MQ=255)
cAGCGTGCGCCTGAGGGGCTTAAGTGTGTCCTGAATACGTACTCCGTGTCGCTGTCTGGCACGCGTGAGGAGGCGAGGGCGCTGGTGTGCTTTGTGGCTGAGCTCGGGGGCTGGAAGGCCTTTGTGTGGACGCCGCCTTa < 2:921301/140‑1 (MQ=255)
gCGTGCGCCTGCCGGGCTGAACGCTGCCCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGCCGCTGGAGTCGTGTATGGCGGACCACCGGGGGTGGCAGGCCCTGGCGTGGACgccgccccatg > 1:479570/1‑135 (MQ=255)
gCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAACGCCGTTCTGTGGCCGCCGCCTTaag > 1:900635/1‑138 (MQ=255)
cGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCCCGGCGCTGGAGTCGTGTCTGGCTGAGCACGGGGGCTGGTAGGCCGGTCTGTGGCcgacgcgatat > 3:477271/1‑133 (MQ=255)
gcgcCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTa < 2:436206/140‑1 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAACCGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTTAGCACGTGTGCTGGAAGGAATTTATTTGGACGCCGCCTTATGCTTag < 4:969304/138‑2 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTAc < 3:397171/138‑1 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAg < 8:1038254/140‑1 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAg < 1:1076464/140‑1 (MQ=255)
cTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACa < 3:335201/138‑1 (MQ=255)
ccGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGGTGAGCACGGGGGGTGGGAGGCCGTTCTGTGGGCGCCGCCGTATGGTTACAGGCAg > 7:890386/1‑140 (MQ=255)
ccGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTAGTTTCTGGCTGAGCAAGGGGGGATGAACGCCTTTATGTGGAAGGCGCCTTATTGTTACAAGCAg > 8:644929/1‑140 (MQ=255)
ggggCTTAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGa < 6:423715/139‑1 (MQ=255)
cGGGCTGAACGCTGAGCTGAAAACGTACAGCGTGTCGCTGTCTGTATCCCGTGAGGAGGACACGGCGCTGGAGTCGTTTCTGGCTGAGGACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGa < 2:1005185/140‑1 (MQ=255)
cGGGCTGAACGCTGACCTGAAAACGTACTGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCa < 3:214869/138‑1 (MQ=255)
cGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGa < 1:841380/140‑1 (MQ=255)
cGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGa < 6:1092256/140‑1 (MQ=255)
tGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAg < 6:758271/140‑1 (MQ=255)
ggtGACCTGATACCGTTCAGCGTGAGGCTGTCTGGCTCCCGTCTGGAGGCGACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGGTCCAGGCAGATAAAGGTGAc < 6:980948/138‑1 (MQ=255)
gCTGACCTGAACACGTACAGCGTGACGCTGTCTGTCACCCGGGAGGAGGCCACGGCGCTGGAGGCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTATGTGGTCGCATACTTATGGTTACAGGCAGATAAAGGTGAc < 2:288190/140‑1 (MQ=255)
gCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCTCGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGAc < 6:232107/140‑1 (MQ=255)
gCTGACATTAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGAc < 5:838158/140‑1 (MQ=255)
aCCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCCCGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCGTTTGGGTACAGGCAGATAAAGGTGACCAgc > 6:81602/1‑140 (MQ=255)
gaaCAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTATGGCTGAGCCCGGGGGCTGGAAGGCCTTTATGTGGACGCCGCCATTAGGGTAGAGGCCGATAAAGGTTACCTGCGCAAAATTgt > 5:257492/3‑140 (MQ=255)
gTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCTCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCGTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGgt < 1:698020/140‑1 (MQ=255)
gTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTGTGGCGGCGCACGGGGGGGGGACTGGCGTTCTGGGGGCGCCGCCGGATGGTAACCGGCAGATAAAGGTGACCTGCGCAAAATggg > 6:880611/1‑139 (MQ=255)
aCAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGTGCACGGGGGGTGGAAGGGCTTTCTGTGGACGCCGCCGTATGGTTACAGGCAGATAAAGGTGACCTGCGGAAAATGgtgg > 2:1379310/1‑138 (MQ=255)
gggTGACGCTGTCTGTTTCCCTTGAGGAGGCCAGGGCGCTGGTTTCGTTTCTTGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATTGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGtcgtcg < 5:188056/138‑1 (MQ=255)
gCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGTAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGtcgtcg < 8:146723/140‑1 (MQ=255)
gCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGtcgtcg < 5:795126/140‑1 (MQ=255)
gCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCGGAGCCCGGGGGCTGGACGGCCGTTGGGTGGACGCCGCCGTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATTGtcgtcg > 6:538761/1‑140 (MQ=255)
gTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGCCGCCGCCTTATGGTTTCAGGCAGATAAAGGTGACCTGCGCAAAATTGtcgtcg > 3:1215527/1‑138 (MQ=255)
gTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGtcgtcg < 4:808886/138‑1 (MQ=255)
gTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTcgcg < 2:146097/140‑1 (MQ=255)
gTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTcgcg < 8:858339/140‑1 (MQ=255)
gTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCATTATGTGGCCGCCGCCGTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGtcgtcg > 4:485946/1‑138 (MQ=255)
gTGACGCTGTCTGTCTCCCGCGAGGCGGCCACGGCGCGGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGCCGCCGCCTTATGGTTACAGGCAGATAAATGTGACCTGCGCAAAATGGtcgtcg < 4:159889/138‑1 (MQ=255)
aCGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTATGGCTGAGCACGGGGGGTGGCAGGCCGTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCGGCGCAAAAAGGTCGGCGCgg > 4:1108294/1‑138 (MQ=255)
aCGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGAGGACGGGGGCTGGAAGGCCTTTCTGTGGTCCCCGCCTTATGGTTAAAGGGCGATAAAGGTGTCCGGCGGAAAATGGTCGTCGCgggg > 1:560391/1‑139 (MQ=255)
aCGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGAGCACGGGGGCGGGGAGGCCGTTGTGGGGGCGCCGCCGTATTGGTACAGGCCGGTTAAGGTGCCCTGGGCCAAATGGTGGTGGCgggg > 1:135985/1‑139 (MQ=255)
ggCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCggg < 3:257873/137‑1 (MQ=255)
cGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCGGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTc < 6:225058/140‑1 (MQ=255)
cGCTGTCTGTCTCCCGGGAGGAGGCCAGGGCGCTTGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGGTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCggg < 3:1278450/138‑1 (MQ=255)
ctgtctgtCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTGTGGCTGCGCACGGGGGCTGGAAGGCCTTTATGTGGCCGCCGCCTTATTGTGACAGGCCTATAAATGTTGCCTGAGCAAAAATGTCGTAGCGGGta > 4:553899/1‑137 (MQ=255)
tctgtctCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAg < 5:609470/95‑1 (MQ=255)
tctgtctCCCGTGAGGAGGCCAAGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGGTGGAAGGCCTTTCGGTGGTAGCCCCCTTTTTGTTAAAGGCTGATAAAGGTGAACGACGCAAAAAGTTGGTCGCGGGtggatat > 2:457574/1‑134 (MQ=255)
atactcCCGTGAGGAGGCCACTTATATGTACTCGTTTCAGGCTGAGCACGGGGGCTGGAAGGCCGTTCTGTGGACGCCGCCTTATGGTTACAGGCAGAAAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAt > 4:1195293/4‑138 (MQ=255)
ttctcCCGTGAGGAGGCCAAGGCGCTGGAGTCGTTTATGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGACTTATGTTTACAGTAATATAAAGGTGACCTGCTCAAAATGGTCGTCGCTGGTCAGTAtgct < 7:644929/139‑1 (MQ=255)
gtctCCCGTGCGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgct < 8:443702/140‑1 (MQ=255)
gtctCCCGTGAGGAGGCCACGGCGCTGGAGTCTTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgct < 7:940651/140‑1 (MQ=255)
gtctCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGATCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATATAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgct < 5:686292/140‑1 (MQ=255)
gtctCCCGTGAGGAGGCCACGGCGCTGGAGGCGTGTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtg < 4:1076645/138‑1 (MQ=255)
ggctcCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgct < 5:681151/138‑1 (MQ=255)
ctcCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgctgc < 8:1101888/140‑1 (MQ=255)
ctcCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgctgc < 6:651827/140‑1 (MQ=255)
ctcCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgctgc < 1:1129084/140‑1 (MQ=255)
ctcCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCGGTGGCCGCCGCCTTATGGTTCCAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgct < 4:121575/138‑1 (MQ=255)
ccGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCgtg < 8:1030000/140‑1 (MQ=255)
ccGTGAGGAGGCCACGGCGCTGGAGTCGTTGCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGGGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCgtg < 6:898233/140‑1 (MQ=255)
gCCACGGCGCTGGAGTCGTTTGTTGCTGAGCACGGGGGCTGGAAAGGCGTTGTGTGGACGCCCCCGTATTGTGACAGGCAGCTAAATGTGACCATGGGAAAATGGTCGGCGCGGGTGAGTATGCTGGGGGGTGAGTTTAg > 8:687633/1‑140 (MQ=255)
cACGGCGCTGGAGTCGTTTCTGGGAGTGCACGGGGGCTGGAAGGCCTTTCTGTTGCCGCCGCCATATTGGTTCACGCAGATAAAAGTGACCGGCGCAAAAAGGTCGTCGCAGGGCAGTATGCTGCGGGTTGAGTTAAg > 3:994584/1‑138 (MQ=255)
ccGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGTCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgcgc < 5:580269/139‑1 (MQ=255)
aCGGCGCTGGTGTCGTTTGTGTCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATATAGGTGACATGCGCAAATTTGTCGTCGCGGGTCTGTATGCTGCGTGTTGAGTTCAgcgc < 1:1295957/140‑1 (MQ=255)
aCGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgcgc < 1:10207/140‑1 (MQ=255)
aCGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgc < 4:628684/138‑1 (MQ=255)
aCGGCGCTGGAGGCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTGCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgcgc < 1:346697/140‑1 (MQ=255)
aCGGCGCGGGAGGCGTTTCTGGCGGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGCTAAAGGTGCCCTGCGCAAAATGGTCGTCGCGGGGCAGTATGCTGCGTGTTGAGTTCAgcgc < 8:330230/140‑1 (MQ=255)
cGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTATGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCa > 8:873957/1‑140 (MQ=255)
gTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTTGAAGCCGCCTTATGGTTACTGGCAGATAAAGGAGACCTGCGCAATATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGTGTTCAGCGCAGAGTTTGAAc < 1:682015/140‑1 (MQ=255)
gTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAAc < 7:167620/140‑1 (MQ=255)
gTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAAc < 1:679300/140‑1 (MQ=255)
gTTTCTTGCTGAGCACCGGGGCTGGAAGGCCGTTATGTTGACGCCACCATATGGTTACAGGCAGATAAATGTGACCTGCGCAAAAAGGTCGTCGCGGGTCAATATGCTGCGTGTTGAGTTCATCGCAGAGTTTTAACAgg > 8:1138498/1‑140 (MQ=255)
ttCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTAc > 4:1153563/1‑56 (MQ=255)
ttCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAggtg < 2:536441/140‑1 (MQ=255)
ttgCTGAGCACGGGGGCTGGAAGGCCTTTATTTGGACGCCGCCGTATGGTTACAGGCAGATAAAGGTGACCAGCGCAAAATTGTCGTCGCGGGTCAGTATGCTGCGTGTTTAGTTCAGCGCAGAGTTTGAACAggtgg > 4:213600/3‑138 (MQ=255)
cTGAGAACGGGGGCTGGAAGGCCTTTCTGTTGAGGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAATCTGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGa < 3:353485/138‑1 (MQ=255)
gAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTcgcg < 8:305380/86‑1 (MQ=255)
gAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTcgcg > 7:305380/1‑86 (MQ=255)
aGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGa > 5:1162778/1‑140 (MQ=255)
cACGGGGGCTGGAAGGCATTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGGCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATg < 6:1197957/140‑1 (MQ=255)
ccGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGc < 2:606804/139‑1 (MQ=255)
cGGGGGCTGGAAGTCATTTCTGTGGACGCCGCCTTATGGTTAAAGGCAGATAAAGGTTACCTGCGCAAAATGGTCTTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCa < 2:12595/140‑1 (MQ=255)
ggAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGatat > 3:438002/1‑138 (MQ=255)
cTTTCTGTGGCCGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCTCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCAGGCAGGa > 8:1261160/1‑140 (MQ=255)
cTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCAg > 4:170415/1‑138 (MQ=255)
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TGGTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCAGGA > NZ_CP022686/4814854‑4815128
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
