Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F13 I0 R1
|
235 |
6960.4 |
9135780 |
98.4% |
8989607 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,814,990 |
T→G |
10.3% |
F71V (TTT→GTT) |
CIW80_RS24295 → |
phage tail protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,814,990 | 0 | T | G | 10.3%
| 302.2
/ 2.6
| 160 | F71V (TTT→GTT) | CIW80_RS24295 | phage tail protein |
| Reads supporting (aligned to +/- strand): ref base T (40/96); new base G (17/5); total (59/101) |
| Fisher's exact test for biased strand distribution p-value = 4.84e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 161 total aligned reads displayed.
TTGGTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCAGGA > NZ_CP022686/4814853‑4815128
|
ttGGTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAATGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCttt < 7:590034/140‑1 (MQ=255)
ggCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAc > 1:290433/1‑140 (MQ=255)
gCTATTCCGTGGGTGCGCCTTCCGGGCTGAACGCTGTCCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACTGCGCTGGTGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 2:897176/140‑1 (MQ=255)
gCTATTCCCAGCGTGGGCCGGCCGGGGAGACCGCGGTCATGACATCGTACAGCGGGACGCTGTGTGGCTCCCGGGAGGCTGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGACGGCCTTTCTGTGGAcg < 6:860996/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGATGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGATGGAAGGCCTTTCTGTGGAcg < 7:299590/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCTTTTCTGTGGAcg < 1:687775/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGa < 3:530297/138‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGa < 4:1087128/138‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 8:304852/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 5:203168/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 1:894093/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 5:326307/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAcg < 6:404435/140‑1 (MQ=255)
gCTATTCCCAGCGTGCGCCGGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCGGGAAGGCCTTTCTGTGGAcg < 5:880734/140‑1 (MQ=255)
cAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCt < 3:356899/138‑1 (MQ=255)
cAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTa < 2:1170422/140‑1 (MQ=255)
cAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTa < 8:480173/140‑1 (MQ=255)
cAGCGTGCGCCTGCCGGGCGGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGCGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCCCGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCttc < 2:796393/140‑2 (MQ=255)
aGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGGACGGGGGGTGGGAGGGCGTTCTGTTGAcgcccgcgttt > 8:466788/1‑133 (MQ=255)
aGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTGTGTGGACGCCGCCTTAt > 2:832428/1‑140 (MQ=255)
aGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCAGAGCACGGGGGCTGGAAGGCCGTTAAGTGGCCGCCCCCGTAt > 6:147117/1‑140 (MQ=255)
aGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGAGGACGGGGGCTGGATGGGCTTTAGGTGGGCGCCGCCTTAt > 6:773518/1‑140 (MQ=255)
cGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCGGGAAGGCCTTTCTGTGGACGCCGCCGTATgg > 7:873411/1‑140 (MQ=255)
cGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGCGCCCGGGGGCTGGTAGGCCTTTCTGTGGACGCCGCCTTATgg > 7:850135/1‑140 (MQ=255)
cGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCGGGAGTCGTGTATGGCTGAGCACGGGGGGTGGAAGTGCGGTCTGTGGGCgccgccagttgg > 7:559175/1‑134 (MQ=255)
gcgcCTGCCGGTCTGAACGCTGACATGAAAACGTACCGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTa < 5:116730/140‑1 (MQ=255)
gcgcCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTa < 1:1110665/140‑1 (MQ=255)
cgcCTGCCGGGCTGAACGCTGACCTGAAACCGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCAGAGCACGGGGGCTGGAAGGCCGTTCTGTGGTCGCCGCCGTTTGGTTaa > 6:847688/1‑139 (MQ=255)
cgcCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTGTGGCTGAGCACGGGGGCTGGAAAGCCTTTCTTGGGGCGCCGCCTTATGGtt > 3:464942/1‑138 (MQ=255)
cgcCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTCGGCACGGGGGCTGGAAGTCCTTTTTGTGTACGCCGCCATATGTTTaa > 5:882745/1‑139 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAg < 1:702938/140‑1 (MQ=255)
ccTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCGTTATGTGGGCGCCGCCGTATGGTTAc > 4:948551/1‑138 (MQ=255)
cTGCCGTGCTGAACGCTGACCTGAAAACGTAAAGCGTGACGCTGTCTGGCTCCCGTGAGGAGGCCACGGCTCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGTCCTTTCTGTTGACGCCGCCTTATGGTTACa < 4:524366/138‑1 (MQ=255)
cTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTGCTGGCGGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACa < 4:140660/138‑1 (MQ=255)
ccGGGCTGAACGCTGCCCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGAAGCCGCCTTATGGTTACAGGCAg > 8:298303/1‑140 (MQ=255)
ggggCTGAAGTCTGACCTTAAAAAGTACTGCGTGACTCTGTCTGTCTCCTGTTAGGTGGCCACGTCGCTGGAGTCGTTTCTTGCTGAGCACGGGGGCTTTAAGGCATTTCTGTGGACGCCGCCTTATGGTTACAGGGAgt < 8:36316/139‑2 (MQ=255)
ggggCTGAACGCTGACCTGAAAACGTACTGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGa < 1:55841/139‑1 (MQ=255)
cGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCa < 4:554965/138‑1 (MQ=255)
cGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCa < 4:912231/138‑1 (MQ=255)
cGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGa < 5:499750/140‑1 (MQ=255)
cGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGa < 5:309274/140‑1 (MQ=255)
cGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGGCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGa < 7:2627/140‑1 (MQ=255)
gAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCACGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGTCTGATAACGGGGGCGGGAAGGCCTTTATGTGGACGCCGCCTTATGGTTAAAGGCAGATAAAgg > 6:428256/1‑140 (MQ=255)
aaCGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACACGCAGATAAAGGt > 5:951040/1‑140 (MQ=255)
gCTGACCTGACAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGAc < 7:389/140‑1 (MQ=255)
gCTGACCTGAAAACTTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGAc < 2:611563/140‑1 (MQ=255)
gCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGAc < 8:661158/140‑1 (MQ=255)
gCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGAc < 6:132395/140‑1 (MQ=255)
ccTGACCTGAAAACGTACAGCGTGCCGCTGTCTGTCTCCCGTGCGGAGGCCACGGCGCGGGAGGCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGAc < 2:325979/139‑1 (MQ=255)
aaaaCGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGTGCACGGGGGCTTGAAGGGCTTTCTGTGGTCGCCGCCTTATGGTTTCAGGCAGATAAAGGTGGCCTGCGCaaa > 6:299759/1‑140 (MQ=255)
aaCGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTGTGGCTGGGCACGGGGGCTGGAAGGCCGTTCTGTGGGCGCCGCCGTATGGTTTCAGGCAGATAAAGGTGGCCAGCGCaaa > 3:865639/1‑138 (MQ=255)
gTACATCGTGACGCTGTCTGTCTCCCGTGAGGAGGACACGGCGCTGGAGTCTTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGgt < 8:127841/140‑1 (MQ=255)
gTACAGCGTGACGCTGTCTGGCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGgt < 8:132901/140‑1 (MQ=255)
aCAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTATGGCGGAGCACGGGGGCTGGTAGGGCTTTCTGTGGGCGCCGCCTTATGGGTACAGGGAGATAAATGTGTCCTGCGCAAAATGgtcg > 1:948468/1‑140 (MQ=255)
aCAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGCGCACGGGGGCTGGTAGGGCTTTCTGTGGGCGCCGCCGTATGGTTAAAGGCAGATAAAGGTGACCTGCGCAAAATGgtcg > 2:178133/1‑140 (MQ=255)
caggttGACGCTGTCTGTCTACCGTGAGTAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTAGGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGgtcgt < 7:437001/135‑1 (MQ=255)
aGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTTGCTGAGCACGGGGGCTGGTAGGCCGTTATGTGGCCGCCGCCGTATGGGTACAGGCCGGTTAAGGTGCCCGGCGCAAAATggggg > 4:845482/1‑135 (MQ=255)
aGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTATGGGTGGGACCGGGGGGTGGATGGCCTTTGTGTGGGAGCCGCCTTTTTGGTTCAGGGCTATAAAAGTGACCGGCGCAAAATTgtcg > 3:116327/1‑138 (MQ=255)
gCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGgtcgt < 4:609955/138‑1 (MQ=255)
ccGTGACGCTTTCTGTCTCCCGTTAGTTGGCCTCGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGAGGGAAGGCCGTTCTGTGGCCGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATgggagt < 4:37902/137‑5 (MQ=255)
gTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGtcgtcg < 4:249597/138‑1 (MQ=255)
gTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTcgcg < 5:715492/140‑1 (MQ=255)
gTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTcgcg < 6:974800/140‑1 (MQ=255)
gTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTcgcg < 2:87256/140‑1 (MQ=255)
gTGACGCTGTCTGTCTCCCGGGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGGCGTcgcg < 2:92549/140‑1 (MQ=255)
gTGACGCTGTCTGTCGCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTcgcg < 1:317137/140‑1 (MQ=255)
gACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGAGCCCGGGGGCGGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCGGCGCAAAATGGTCGTCGCggg > 7:784543/1‑140 (MQ=255)
tctgtctCCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTGTGGCTGAGCCCGGGGGCTGGAACGCCGTTCGGTGGACGCCGGCTTATGGTTACACGCAGATAAAGGTGACCAGCGCAAAAAGGTCGTCGCGGGTGAGTAt > 8:420141/1‑140 (MQ=255)
gtctCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgct < 7:163544/140‑1 (MQ=255)
gtctCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtg < 3:11252/138‑1 (MQ=255)
gtctCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGGGACCTGCGCAAAATGGTCGTCGCGGGGCAGTAtgct < 8:930141/140‑1 (MQ=255)
tctcCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGAGCCCGGGGGGTGGAAGGCCGTTCTGTGGCCGCCGCCGTATGGTTACAGGCAGATAAAGGTGACCAGCGCCAAATTGTCGGCGCGGGTCAGTAtgg > 4:610687/1‑137 (MQ=255)
ctcCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgctgc < 7:1077829/140‑1 (MQ=255)
ctcCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTAtgctgc < 8:928055/140‑1 (MQ=255)
tcCCGTGAGGAGGCCACGGCGCTGGAGTCGTGTGTGGCGGAGCACGGGGGCTGGAAGGCCGTTATGTGGGCGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGTGGGTCGGGGGTCAGGAtgctggg > 2:81348/1‑138 (MQ=255)
ccGTGAGGAGGCCACGGCGCTGGAGTCGTGTGTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCGTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTGGTCGCGGGTCAGTATGCTGCg > 3:634616/1‑138 (MQ=255)
gTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTATGTGGACGCCGCCGTATGGTTTCAGGCAGATAAAGGTGACCGGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGtt > 2:882697/1‑140 (MQ=255)
gTGAGGAGGCCACGGCGCTGGAGTCGTGTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGtt > 8:356722/1‑140 (MQ=255)
gaggagGCCACGGCGCTGGAGTCGTGTCTGGCTGAGCACGGGGGCGGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTTCAGGCAGATAAAGGTGACCGGCGCAAAATGGTCGTGGCGGGTCAGGATGCTGCGTGtt > 4:176814/1‑138 (MQ=255)
gaggCCACGGCGCTGGAGTCGTTTCTGTCTGAGCACGGGGGCTGGAAGGCCTTTCTGGGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAg < 3:880770/138‑1 (MQ=255)
aCGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAgcgc < 6:436901/140‑1 (MQ=255)
ggAGTCGTTTCTGGAGGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGtt < 3:706881/138‑1 (MQ=255)
ggcGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAAc < 2:673995/138‑1 (MQ=255)
gTCGTTGCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACTCCGCCTTATGGTTACAGGCAGTTAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCTGAGTTTGAAc < 5:147117/140‑1 (MQ=255)
cGTTTCGGGCGGAGCACGGGGGCTGGAAGGCCTTTCGTTGGACGCCGCCTTATGGTTACAGGCAGATAACGGTGACCTGCGCAAAATGTGCGTCGCGGGGCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAAc < 4:104421/138‑1 (MQ=255)
gTTTCTGTCTGAGCACGGGTGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAgg < 2:727100/140‑1 (MQ=255)
gTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAgg < 1:840634/140‑1 (MQ=255)
gTTTATGGCTGAGCACGGGGGCTGGAAGGCCATTCAGTGGCCCCCGCCATATGGGTACAGGCATATAAAGGTTAACTGAGGAAAATGGTCCTCGCGGGTCAGTATTCAGCGTGTTTAGTTAACCGCATAGTTTTAACAgg > 6:366998/1‑140 (MQ=255)
tCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAggtgg < 8:620713/140‑1 (MQ=255)
gCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGaa < 1:1025541/140‑1 (MQ=255)
gCTGAGCACGGGGGCTGGAAGGCCGTTCAGGGGCCCCCGCCTTATGGTTACAAGCAGATAAAGGTCACCTGCGCCAAATGGTCGTCGCGCGTCATTAAGCAGCGTGGGGAGTTACTCGAAGAGATTGAACAGGTGTTGaa > 2:936902/1‑140 (MQ=255)
aGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGCCCTGCGCTAAATGGTCGTCTCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGGGAACAGa > 6:454989/1‑140 (MQ=255)
cGGGGGGTGGAAGGCCTTTCTGTGGACGCCGACTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGCGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCa < 8:885906/140‑1 (MQ=255)
cGGGGGCTGGAAGGCCGTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGGCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTGGAACAGGTGGTGAACTGATGCa < 5:516682/140‑1 (MQ=255)
cGGGGGCTGGAAGGCCGTTATGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTTAACTGATGCa < 8:254467/140‑1 (MQ=255)
tGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATc < 7:356722/140‑1 (MQ=255)
ccTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTTAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCAgg < 2:681428/140‑1 (MQ=255)
ccTTGCTGTGGACGCCGCCTTATGGTAACAGGCAGATAAAGGTGACCTGCGCAAACTGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCa < 3:738774/138‑1 (MQ=255)
cTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCAGGa < 8:829696/140‑1 (MQ=255)
cTTTCTGTGGACGCCGCCTTATGGGTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGATCTGATGAAGGATATCCGGAAGGa > 6:445592/1‑140 (MQ=255)
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TTGGTGATGGCTATTCCCAGCGTGCGCCTGCCGGGCTGAACGCTGACCTGAAAACGTACAGCGTGACGCTGTCTGTCTCCCGTGAGGAGGCCACGGCGCTGGAGTCGTTTCTGGCTGAGCACGGGGGCTGGAAGGCCTTTCTGTGGACGCCGCCTTATGGTTACAGGCAGATAAAGGTGACCTGCGCAAAATGGTCGTCGCGGGTCAGTATGCTGCGTGTTGAGTTCAGCGCAGAGTTTGAACAGGTGGTGAACTGATGCAGGATATCCGGCAGGA > NZ_CP022686/4814853‑4815128
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
