Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F12 I0 R1
|
131 |
9881.0 |
7547414 |
98.3% |
7419107 |
134.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,965,173 |
A→C |
9.8% |
R86R (CGT→CGG) |
nfeF ← |
NADPH‑dependent ferric chelate reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,965,173 | 0 | A | C | 9.8%
| 311.6
/ 4.3
| 174 | R86R (CGT→CGG) | nfeF | NADPH‑dependent ferric chelate reductase |
| Reads supporting (aligned to +/- strand): ref base A (72/80); new base C (3/19); total (75/99) |
| Fisher's exact test for biased strand distribution p-value = 2.54e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 175 total aligned reads displayed.
GAACCGCGCGGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCC > NZ_CP022686/1965036‑1965305
|
taaCCGGGCGGACCTGCCACGGTATGTTTATCGCCCGGTTTCGCATGCATCGCCCAGCCGCGGGCGACCCCACCGACTTTAATAATCAAATCGATGGCCTGTTCTTGGCGTTGTTCGTCATACAGCGGCGTATAGTCa < 5:469668/137‑1 (MQ=255)
aaCCGCGCGGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTTAATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGATATCGAAAGCCAGGTCATTGCGTAGTTCTTATTACAGCGGCGTTTAGTCAc > 2:195240/1‑138 (MQ=255)
gcgcgGACCTGCCCCCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATACAGAAATCGATCGCCAGGTCTTGGGGGTGTTCGGCATACCGCGGCGTTTAGTCAcgcgc > 5:88666/1‑137 (MQ=255)
gcgcgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCAGACAGCGGCGTATAGTCACGCGa > 6:691069/1‑138 (MQ=255)
cgcgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTTTAGTCACGCGAc > 6:80272/1‑138 (MQ=255)
cgcgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAAACGATAGCCAGTTCATGGCGTTGTTCGTCATACAGCCGCGTATAGTCACGAGACgg > 4:806601/1‑140 (MQ=255)
cgcgCACATGCCAGCGTAATTTTATCGCCCGGTTTCGCCTCCTTCGCCCAGCCGCTGGCGACCCCACCGTCGGCAATAAACAAATCGATCGCCAGTTCAGGGCGTAGTTCGTCATACAGCGGCGTATAGACCCGCGACgg < 4:957119/140‑1 (MQ=255)
cgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTTGTTCGTCGTACAGCGGCGTATAGTCACGCGCCgg > 6:210727/1‑138 (MQ=255)
cgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACgg > 6:455568/1‑138 (MQ=255)
cgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACgg > 6:731805/1‑138 (MQ=255)
cTGACACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTGATACAGCGGCGTATAGTCACGCGACGGTGGGc > 2:784897/1‑138 (MQ=255)
ggCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTg < 4:760528/139‑1 (MQ=255)
gCCCCCGTAAGTTTATCGCCCGGTTTCGCCGGCATCGCCCCGCCGCGGGCGACCCCACCGTCGTGAATAAAGAAATCGCTCGCCAGTTCATGGCGTAGTTCGTCATACCGCGGCGTATAGCCACGCGACGGTGGGCGt < 7:2948/138‑1 (MQ=255)
cccACCGTACGTTTATCGCCCGGTTGCGCATGCAGCCCCCAGCCGCGGGCGCCCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTCGTGCGTGGTACAGCGGCGTATAGGCCCGCGACGGTGGGCGt < 6:89561/137‑1 (MQ=255)
ccACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGGTAATGGCGTAGTTCGTGATACAGCGGCGTATAGTACAGCGACGGTGGGCGTGGt > 4:505264/1‑140 (MQ=255)
aCCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCCGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATAGCCAGTTCATGGCGTAGTTGGTCATACAGCGGCGTATATTCACGCGCCGGTGGGCGTGGt > 6:261031/1‑138 (MQ=255)
aCCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGt > 6:231746/1‑138 (MQ=255)
cGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCtt < 4:187054/140‑1 (MQ=255)
gTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGATGGCGACCCCACCGTCGTGAATAAAGAAATCGATCCCCAGTTCATGGCGGAGTTCGTCATACAGAGGCGTATATTCACCCCCAGGTGGGCGTgggactta > 3:52088/1‑134 (MQ=255)
aaGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTc > 2:365322/1‑138 (MQ=255)
aaGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACACCGGCGGAAAGTCACGCGACGGTGGGCGTGGTCCTTc > 1:209750/1‑138 (MQ=255)
tttATCGCCGTGTTTGGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGCCGTTATTAAAGAAATCGAGCGCCAGTTCATGGCGTTGTTCGGCATACAGCGGCGTATTGACACGCGACGGTGGGCGTGGTCCTTCCgg < 2:796981/138‑1 (MQ=255)
aTCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCa < 8:620824/138‑1 (MQ=255)
tCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGTATAAAGAAATAGATAGCCAGTTAATGGCGTAGTTGGTCATACAGCGGCGGATATTAACGCGACGGTGGGCGTGGTCCTTACGGCCAg > 1:437148/1‑138 (MQ=255)
cGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATAGATCGCCCGTTCATGGCGTAGTTCGTCATACACCGGCGTATAGTCACGCGACCGTGGGCGTGGTCCGTCCGGcccgc > 2:243328/1‑135 (MQ=255)
gCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTAAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGAc > 1:601847/1‑138 (MQ=255)
gTTTCGCCTGCAGCGCCCAGCCGGGGGATACCCCACCGTCGTTATTAACTAATTCGATCGCCAGTTAATGGCGTTGTTCGTCATACAGCGGCGTATAGGCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGc < 2:353864/138‑1 (MQ=255)
ttCGCCTGCATCGCCCAGCCGCTGGCTACCCCCCCGTGGTGAATAAAGAAATCTATCGACAGTTCATGGCGTAGTTGGTCCTACAGCGGTGTATCGTCACTCGACGGTGTGCGTGGTCCTTCCGGCCAGTCGATGCCctc < 4:818312/140‑1 (MQ=255)
ttCCCCTGCATCGCCCAGCCGCTGGCGCCCCCACCGTGGTTAATAAAGAAATCGATCGCCTGTTCATGGCGTAGTGCGTCATACCGCGGCTTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGccc < 7:850881/138‑1 (MQ=255)
cTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGAACGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTc < 2:619124/138‑1 (MQ=255)
ccAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGt < 2:684523/138‑1 (MQ=255)
cAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATAGCCAGTTCATGGCGTACTTCGTGATACAGCGGCGTATAATCACGCGCCGGAGGGCGTGGTCCTTCCGGCCAGACGCTGCCCGCGTCCGTTACCggt > 8:63741/1‑136 (MQ=255)
ggCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGCCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTg < 6:58082/137‑1 (MQ=255)
cgCCGCTGGCGACCCCACCGGCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTggc < 4:222500/139‑1 (MQ=255)
gggCGACCCCAGCTTCTTTAATAAACAAATCGATCGCCTGTTCATGGGTTAGTGCGTCATACAGCGGCGTATATACACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGcaca < 3:418595/139‑1 (MQ=255)
gggCGACCCCACCGTGGTGAATAACAAAATCGATCGCAATTTCATGGCGTAGTTCGTCATACAGCGGCGTATTGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGcaca < 3:498280/139‑1 (MQ=255)
gggCGACCCCACCGTCGTGAATAAAGAAATGGATCGCAAGTTCATGGCGTAGTGCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGcaca < 3:243662/139‑1 (MQ=255)
gggCGACCCCACCGTCGTGAATAAAGAAATCTATCGCCAGTTCATGGCGTAGTGCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGcaca < 4:651570/139‑1 (MQ=255)
cGACCCCACCGTCGTGAATAAAGAAATCGCTCGCCAGTTGATGGCGGAGTTGGTCATACAGCGGCGTTTAGTCACGCGCCGGGGGGCGTGGTGCGTCCGGCCCGACGCTGCCCTCTTCCGGTACCGGTggcggcccca > 1:747962/1‑134 (MQ=255)
gACCCCAGCGGCGTTAATAAAGAAATCGATCGCCAGTTCTTGGCGTAGTTCGTCAACCAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACaaa < 1:167125/138‑1 (MQ=255)
cACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCAAACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCATCCGGCCAGCAGATGCCCGCATCCGTTACCGTTGGCGGCCCAAagtgag > 7:710927/1‑138 (MQ=255)
ccGTGGTGAATAATGAAATCGATCGCCAGTTCATGGGGTAGTTCGGCTTCCTGCGGCGTATAGTCACGCGAGGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAagtgagtg < 8:797567/138‑1 (MQ=255)
ccGTGGTGAATAAAGAAATCTATCGCCAGTTCATGGCGTTGTTCGTCATACTGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAagtgagtg < 8:717537/138‑1 (MQ=255)
gcgtGAATACAGAAATCGAGCGCCAGATCATGGCGTTGTTCGTCATCCAGCGGCGTATAGTCCCGCGACGGTGGGCGTGGGCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCNGCACAAAGTGAGTGCCTgg < 3:941764/139‑1 (MQ=255)
tttaaTAAAGAAATCCATCGCCAGTTAATGGGGTAGTTCGTCATACAGCGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTgg < 7:432232/135‑1 (MQ=255)
gtGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGCCGGTGGGCGTGGTACTTACGGCCAGACGATGCCCTCTTCCGGTACCGTTGGCGGCACAAAGTGAGTGCCTGGtt > 3:214725/1‑140 (MQ=255)
tGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATAAAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTg > 4:878462/1‑140 (MQ=255)
attaaataaaTGGAGCGCCTGTGCATGGCGTAGTGGGTCATACAGCGGCGTATATTCACGCGTCGGTGGGCGTGGGCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTg < 7:441148/136‑1 (MQ=255)
aataaataAATCGCTCGCCATTTCTTGGGTTTGTTGGTATTTCAGCGTCTTATATTAACGGGACTGTGGGCGTGGTCCTTCCGGCTAGACGATGCCCTCTTACTTTACCGTTGGCTGCAGAAAGTGAGTGCCTGGTTg < 8:565686/138‑1 (MQ=255)
aaTAAAGAATTCGATCGCCAGTTCAGGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTg < 8:302810/138‑1 (MQ=255)
tAAAGAAATCGATCGCCATTTCATGGCGTAGTTCGTAATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAg < 5:691069/138‑1 (MQ=255)
tAAAGAAATCGATCGCCATTGAATTGCTTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCTTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGAGCCTGGTTGAg < 5:676059/138‑1 (MQ=255)
taaaTCGCTCGCCAGTTCATGGCGTAGTTCGGCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTTCGGTTGGCGTAAAAAATTGAGTGCCTGGTTGAGGaat < 8:212839/137‑2 (MQ=255)
taaaTCGAGCGCAAGTGCATGGCGTAGTTCGTAATACTGCGGCGTATAGGCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGGTGAGGaaa < 6:217062/137‑1 (MQ=255)
caaaGCGATCGCCAGTTCATGGGGTAGTTCTTCAAACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTGTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGaaa < 8:370989/137‑1 (MQ=255)
aaaTCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAaag > 1:82454/1‑138 (MQ=255)
tcgatcgCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAagag > 4:120851/1‑140 (MQ=255)
tcgatcgCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAagag > 4:314248/1‑140 (MQ=255)
gcgatcgCCTTTTCATGGGGTAGTTCTTCATACAGCGGCTTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAaagaag < 1:22584/137‑1 (MQ=255)
gatcgCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAagag > 6:475147/1‑138 (MQ=255)
atcgCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGACCtt > 3:610792/1‑140 (MQ=255)
tgTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCtg < 5:231746/137‑1 (MQ=255)
cgtgcATGGCGTAGTTCGTCATACAGCGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCtg < 8:53443/134‑1 (MQ=255)
aGTTCATGGCGTAGTTGTTCATACAGCGGGGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCtgtg < 3:806601/140‑1 (MQ=255)
cGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCa > 7:648759/1‑138 (MQ=255)
tgggcATACAGCGGCGTATCGCCCCGCGACGGGGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGAGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 3:290327/136‑1 (MQ=255)
tCGTCATCCTGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 5:534565/138‑1 (MQ=255)
tCGTCATACCGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 8:605463/138‑1 (MQ=255)
tCGTCATACAGCGGTGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 8:172599/138‑1 (MQ=255)
tCGTCATACAGCGGGGTATCTTCACGCGTCGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTAGAGTTGGCGGCACAAAGTGAGTGACTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 1:349663/138‑1 (MQ=255)
tCGTCATACAGCGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 5:312013/138‑1 (MQ=255)
tCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTGCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 7:321420/138‑1 (MQ=255)
tCGTCATACAGCGGCGTATAGTCACGAGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTCTGATCGTCAAAGCcg < 6:573320/138‑1 (MQ=255)
tCGCCATCCAGCGGCGTATTGTCACGCGACGGGGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 2:721358/138‑1 (MQ=255)
gcGTCATCCCGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 1:405024/137‑1 (MQ=255)
gcGTCATACCGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 8:161602/137‑1 (MQ=255)
gcGTCATACAGCGCCGTATAGGCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCGGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 1:671442/137‑1 (MQ=255)
ccgacATACACCGCCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGAACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 7:171637/134‑1 (MQ=255)
gtctaaCAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 2:310980/133‑1 (MQ=255)
gTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcgcg > 4:585116/1‑140 (MQ=255)
tCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGCTGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcgc > 1:923686/1‑138 (MQ=255)
cATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCTGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGAt > 4:275719/1‑140 (MQ=255)
cATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGAt > 4:377089/1‑140 (MQ=255)
cATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGAt > 4:636514/1‑140 (MQ=255)
ggggcgTATAGTCCCGCGACGGGGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTGACCGTTTGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa < 2:21734/136‑1 (MQ=255)
ccggggTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCGCTTCCGTTACCGTTGGCGGCACATAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa < 5:712843/137‑1 (MQ=255)
gcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAAc > 5:600637/1‑138 (MQ=255)
gcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAAc > 5:439266/1‑138 (MQ=255)
gcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAAc > 2:961362/1‑138 (MQ=255)
gcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAAc > 2:362426/1‑138 (MQ=255)
gcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAAc > 5:405547/1‑138 (MQ=255)
gcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAAc > 6:810656/1‑138 (MQ=255)
cgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGtt > 3:797177/1‑89 (MQ=255)
gTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCg > 5:849564/1‑138 (MQ=255)
gTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGGCACAGCCGCGCGATGTAAAACCg > 7:869667/1‑138 (MQ=255)
gTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGGGATCGTCAAAGCCGCGCGATGTAAAACCg > 5:501931/1‑138 (MQ=255)
tataGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGt > 5:765497/1‑138 (MQ=255)
tataGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTcc > 3:843549/1‑140 (MQ=255)
tataGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTcc > 3:949207/1‑140 (MQ=255)
tCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 3:688953/119‑1 (MQ=255)
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GAACCGCGCGGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCC > NZ_CP022686/1965036‑1965305
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
