Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F36 I0 R1
|
275 |
10897.2 |
10515506 |
98.4% |
10347257 |
135.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,965,173 |
A→C |
8.3% |
R86R (CGT→CGG) |
nfeF ← |
NADPH‑dependent ferric chelate reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,965,173 | 0 | A | C | 8.3%
| 491.4
/ 3.3
| 263 | R86R (CGT→CGG) | nfeF | NADPH‑dependent ferric chelate reductase |
| Reads supporting (aligned to +/- strand): ref base A (102/130); new base C (6/24); total (108/155) |
| Fisher's exact test for biased strand distribution p-value = 1.68e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 266 total aligned reads displayed.
AACCGCGCGGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCT > NZ_CP022686/1965037‑1965312
|
cgcgcgGACCTGCCACCGTAAGTTTATCCCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCCCCGGCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTGATACAGCGGCGTATAGTCAcgcgcc > 7:522852/1‑138 (MQ=255)
gcgcgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCCTACAGCGGCGTATAGTCCCGCGa > 1:741837/1‑138 (MQ=255)
cgcgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCACCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACCGCGGCGAATAGTCCCGCGAc < 2:493698/138‑1 (MQ=255)
cgcgGACCTGCCACCGTAAGTTTATCGCCCGGTTCCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACgg < 6:982072/140‑1 (MQ=255)
cgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATAGATCGCCAGTTAATGGCGTAGTTAGTCAATCAGCGGCCGATATTCACGCGACgg > 3:580326/1‑138 (MQ=255)
ccACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGCCCCCACCGTCGTGAATAAAGAAATCGATCGCCAGGTCATGGCGTAGTTCGTCAGTCAGCGGCGTATAGGCCCGCGCCGGGGGGCggggg > 7:1151423/1‑139 (MQ=255)
ccACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTAACGCGACGGTGGGCGTGGt > 6:253679/1‑140 (MQ=255)
cGTAAGTTTATCGCCCGGTTGCGCCTCCATCGCCCAGCCGCTGGCGACCCCCCCGTCGTGAATAAAGAAATCGATCGCCTGTTCATGGCGTAGTTCGTCATACAGCGGCGAATAGTCACGCGACGGTGGGCGTGGTcc < 2:773025/138‑1 (MQ=255)
gTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCAAGGCGTAGTTGGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTc > 8:1169482/1‑140 (MQ=255)
gTTTATCGCCCGGTGTCGCCTGCAGCGCCCAGCCGCGGGCGACCCCACCGGCGTTAATAACGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCg < 2:1037439/138‑1 (MQ=255)
tttATCGCCCGGTTTCGCCTGCATCGCCCCGCCGCTGGCGACCCCACCGCCGTGAATAAAGAAAGCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGcc < 6:136278/140‑1 (MQ=255)
tttATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACCGCGGCGGATAGTCACGCGCCGGTGGGCGTGGTCCTTCCgggc > 6:951632/1‑138 (MQ=255)
ttattCGCCCGGTTGCGCCGGCAGCGCCCCGCCGCTGGCTACCCCACCGTCGTTAATCACGAAACCGAGCGCCTGTTCATGGCGTAGTTCGCCATACAGCGGCGTATAGGCACGCGACGGTGGGCGTGGTCCTTCCgg < 3:38233/134‑1 (MQ=255)
tATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATAGCCAGTTAATGGCGTAGTTCGTCATACAGCGGCGTTTAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAg > 6:1001469/1‑140 (MQ=255)
cGCCCGTTTTCGCCTGCATCGCCCACCCGCTGCCGACCCCACCGTCGTTAATAAAGAAATCGATCGCCTTTTCTTGGGGTAGTGCTTCATACACCGGCGTATAGACACGCGACGGTGGGCGTGGTCCTTCCGGCCAGa < 3:170602/138‑1 (MQ=255)
cGCCCGGTTTCGCCTGCAGCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAACAAATCGATCGCCAGTTCATGGCGTAGTTCGACATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGa < 1:582842/138‑1 (MQ=255)
ggTTGCCCCGGCAGCGCCCCGCCGCGGGCTACCCCCCCGCCGGGAATAAACAAATCGAGCCCCAGTTCATGGCGTAGTGCGTCATCCAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGcc < 8:130679/140‑1 (MQ=255)
ttCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGccc < 3:414660/138‑1 (MQ=255)
ttCGCCTGCATCGCCCAGCCGCGGGCGACCCCACCGTCGTGAATAAAGAAAGCGACCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCctc < 8:42820/140‑1 (MQ=255)
ttCGCCTGAAGCGCCCAGCCGGTGGCTACCCCACCGTCGTGAATAAATAAATCGATCGCCAGTTCAGGGCGTAGTTCGTCATACAGCGGCTTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGccc < 1:1009075/138‑1 (MQ=255)
gCCTGCATCGCCCAGCCTCGGGCGACCCCACCGTCGTGAATAAACAAAGCTAGCGCAAGTTCATGGCGTCGTTCGGAAAACCGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTc < 7:948952/140‑1 (MQ=255)
cTGCATCGCCCAGCCGCGGGCGACCCCACCTTCGTTAATAAAGAAATCGATCGCCATTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTc < 3:959855/138‑1 (MQ=255)
ccAGCCGCTGGCGACCCCACCGTCGTTAATAAATAAATCTCCCGCCTTTTCTGGGCGAAGTTCGTCATACCGCGGCGTAAAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTg < 5:76024/140‑1 (MQ=255)
cAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTTGTTCGTCATAAAGCGGGGTATAGTAACGCCACGGTGGGCGTGGTCATTCCGGCCAGACCATGCCCTCTTCCGTTACCGtt > 4:860931/1‑138 (MQ=255)
cggCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGACCAGACGATGCCCTCTTCCGTTACCGTTggc < 1:724607/136‑1 (MQ=255)
ccGCTGGCGCCCCCACCTGCGTCAATACCCAAATCGCGCGCCAGTTCATGGCGTTGTGCGTCAAACCGAGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTCCCGTTggc < 1:199228/138‑1 (MQ=255)
ccGCTGGCGACCCCCCCGTCTGTAATAACGAAATCGAGCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGGCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTggc < 4:459990/138‑1 (MQ=255)
ccGCTGGCGACCCCACCGTCTTGAATAAAGAAATCGATGCCCAGTTCATGGGGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTggc < 1:635284/138‑1 (MQ=255)
ccGCGGGCGACCCCACCGGCGTGATTAAACAATTCGATCGCCAGTGCTTGGCGTAGTTCCTCTTACTGGGGCGTATTGTCACGCGACGGTGGGCGTGGTCCTTCCGGCGAGAGGATGCCCTCTTCCGTTACCGTTggc < 3:888058/138‑1 (MQ=255)
cGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGCCGATGCCCTCTTCCGTTACCGGTGGCGGCACaa > 4:138566/1‑138 (MQ=255)
gACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTGCATGGCGTAGTGCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAagt < 8:181857/140‑1 (MQ=255)
caCCCCTCGGGCGTTAATAAAGATATCTATCGCCTGTTCATGGCGTAGTTCGTCATACAGCGGCGTTTAGCCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACaaa < 1:1137535/137‑1 (MQ=255)
cACCGTCGTCAATAACGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAagtgag < 3:1289297/138‑1 (MQ=255)
aCCGTCGTGAATAAAGAAAACGATCGCCAGTTCATGGCGTAGTTCGTCCTACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATTCCCGCTTGCGTTACCGTTGGCGGCACAAagtgcgtgg > 8:608708/1‑139 (MQ=255)
ccGTCGTTAATAAAATACTCTTTCGCCAGTTCTTGGGGTTGTTCGTCATACCGCGGCGTATTGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAagtgagtg < 2:589982/138‑1 (MQ=255)
gttaaTAAAGAAATCGATCGCCTGTTCATGGGTTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGtt < 6:1226488/137‑1 (MQ=255)
gttaaTAAAGAAATCGAGCGCCTGTTCTTGGCGTAGTCGGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGtt < 7:802555/137‑1 (MQ=255)
gtGAATAACTAAATCGCTCGCCTGTTCATGGCGTAGTTCGTCATCCAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTgg < 2:1109813/138‑1 (MQ=255)
gtGAATAAAGAAAGCGATCGCAAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGtt < 7:420659/140‑1 (MQ=255)
taaaaaataaatCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGGGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGa < 5:1049625/136‑1 (MQ=255)
aaTAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATATTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGCCGATGCCCTCTTCCGTTACCGGTGGCGGCACCAAGTGAGTGCCTGGGTg > 4:718891/1‑138 (MQ=255)
aaTAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTg > 4:1102537/1‑138 (MQ=255)
tAAAGAAATGGTTCGCAATTTCATGGGTTTTTTCGTAATACTGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGa < 5:1001469/140‑1 (MQ=255)
aGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGaa > 3:1088520/1‑138 (MQ=255)
taaaTCTATCGCCTGTGCTTGGGGTTTTTCGTCATACTGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAaaga < 6:552675/139‑1 (MQ=255)
gAAATCTATCGCCAGTTCAGTGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGGGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAaaga < 8:557512/140‑1 (MQ=255)
gAAATCGAGCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAaaga < 8:30175/140‑1 (MQ=255)
aaaTCGATCGCCAGTTCTTGGCGTATTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAaag < 4:809426/138‑1 (MQ=255)
aaaTCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACTGTGGGCGTGGTCCTTCCGTCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAACGTGAGTGCATGGGTGAGGaaat > 4:190216/1‑137 (MQ=255)
aaaTCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAaag > 2:1181994/1‑138 (MQ=255)
tctagcgCCAGTTCATGGCGTTGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAaagaag < 1:268835/133‑1 (MQ=255)
ggatcgCCTTTTCATGGGGTAGTTCGTCATACTGCGGCGTATTGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAagaaga < 2:341506/137‑1 (MQ=255)
cgatcgCCAGTTCTGGGCGTAGTTGGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGc < 6:361210/140‑1 (MQ=255)
gctcgCCAGTTCATGGCGTATTTCGTCATACAGCGGCTTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCt < 8:245101/138‑1 (MQ=255)
gatcgCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGGTGAGGAAAGTagag > 2:194360/1‑138 (MQ=255)
cgCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCtt > 3:799276/1‑138 (MQ=255)
cgCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTgg > 8:762015/1‑139 (MQ=255)
tgTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGGCTCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGTCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCtgtg < 8:1043235/139‑1 (MQ=255)
tgTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGGCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGACTGGTTGAGGAAAGAAGAGCTTGCtgtg < 8:1075824/139‑1 (MQ=255)
cgtgattGGCGTAGTTCGACATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCtgtg < 5:95179/134‑1 (MQ=255)
atttCATGTCGTATTTCGTCATACTGCGGCTTATAGTCACGCGACGGTGGGCGTGGTCCTTCAGGCCAGACGATGACCTCTTCCGTTACCGTTGGCGGCACAAATTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCtgtg < 8:586665/138‑1 (MQ=255)
aGTTCATGGGGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCtg < 3:653436/138‑1 (MQ=255)
aGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCtg > 2:1295122/1‑138 (MQ=255)
cGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGACGAAAGAAGAGCTTGCTGTGATCGTCaaa > 8:525749/1‑140 (MQ=255)
ttAGTTCGACATACAGCGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCaa < 4:320019/137‑1 (MQ=255)
tAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTg < 4:338993/44‑1 (MQ=255)
aGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGCCGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGcc > 5:439349/1‑140 (MQ=255)
aGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGAACGTCAAAccc > 7:188833/1‑140 (MQ=255)
ttCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTcc > 1:144680/1‑45 (MQ=255)
ttCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTcc < 2:144680/45‑1 (MQ=255)
ttCGTCATACAGCGGCGTATAGTCACGCGACCGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGCTTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAgac > 2:734833/1‑136 (MQ=255)
tcttCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 4:877801/135‑1 (MQ=255)
tCGTCCCACCGCGGCGTATCGCCAAGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCATCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 5:262273/140‑1 (MQ=255)
tCGTCATCCAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCGGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 4:1204322/138‑1 (MQ=255)
tCGTCATACCGCGGCTTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 5:243511/140‑1 (MQ=255)
tCGTCATACCGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGTCCAGACGATGCCCTCTTCCGTTACCGTTGGCGTCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 5:1059358/140‑1 (MQ=255)
tCGTCATACAGCGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 1:456921/138‑1 (MQ=255)
tCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 7:145300/140‑1 (MQ=255)
tCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 2:904537/138‑1 (MQ=255)
tCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 1:253544/138‑1 (MQ=255)
gcGTCATCCAGCGTCGTTTAGGGACGCGACGGTGGGCGGTGTCCTGCCGGCCAGACGATGCCCTCTTCCGTTTCCGTTGGCGGCACAAAGTGAGGGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 6:655/139‑1 (MQ=255)
ccGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGGCCTTCCGGCCAGACGATGCCCTCTTCAGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 2:418076/137‑1 (MQ=255)
gTCAAACCGCGGCTTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTCCCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGGCAAAGCcgcgcg < 6:1144485/140‑1 (MQ=255)
cATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGAt > 6:804211/1‑140 (MQ=255)
aTACAGCGGCTTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGa < 1:546733/138‑1 (MQ=255)
tACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGAt > 3:1217767/1‑138 (MQ=255)
cAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa > 7:575736/1‑140 (MQ=255)
gcggcgTATCGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTAACGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa < 1:105535/138‑1 (MQ=255)
gcggcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa < 3:28648/138‑1 (MQ=255)
cggcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAAc > 6:205157/1‑140 (MQ=255)
cggcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAAc > 5:409959/1‑140 (MQ=255)
gcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCg > 5:12452/1‑140 (MQ=255)
gcgTATAGTCACGCGACGGTGGGCGTGGTCCTGCCGGCCAGACGATGCCCACTTCCGTTACCGATGGCGGCCCAAAGTGAGTGCCTGGTTGCGGAAAGAAGAGCATGCTGTGATCGTCAAAGCAGCGCGATGTAAAAc > 3:342821/1‑138 (MQ=255)
gTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCg > 1:1306955/1‑138 (MQ=255)
gTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGATGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCg > 3:1007495/1‑138 (MQ=255)
tataGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 5:129965/124‑1 (MQ=255)
taGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTcc > 1:1161640/1‑138 (MQ=255)
taGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGACTGGTTGAGGAAAGAAGAGCTTGATGTGATCGTCAAAGCCGCGCGAGTTAAAACCGTcc > 1:304867/1‑138 (MQ=255)
aCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCt > 8:464366/1‑140 (MQ=255)
aCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCt > 8:889941/1‑140 (MQ=255)
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AACCGCGCGGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCT > NZ_CP022686/1965037‑1965312
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
