Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A28 F11 I0 R1
|
246 |
10296.8 |
9866480 |
98.4% |
9708616 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,965,173 |
A→C |
8.4% |
R86R (CGT→CGG) |
nfeF ← |
NADPH‑dependent ferric chelate reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,965,173 | 0 | A | C | 8.4%
| 344.8
/ 3.1
| 202 | R86R (CGT→CGG) | nfeF | NADPH‑dependent ferric chelate reductase |
| Reads supporting (aligned to +/- strand): ref base A (85/94); new base C (8/15); total (93/109) |
| Fisher's exact test for biased strand distribution p-value = 2.75e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 206 total aligned reads displayed.
CGAACCGCGCGGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCT > NZ_CP022686/1965035‑1965312
|
cGAACCGCGCGGACATGCCACCGTATGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCTTTAATAAAGAAATCGATCGCCAGTTCATGGCGTATTTCGTCAAACAGCGGCGTATAGTCAc < 1:1264354/140‑1 (MQ=255)
caaCCGCGCGTACCTGCCACGGTATGTTAAGCGCCCGGTTGCGCAGGCATCGCCCAGCCGGGGGCGACCCCACGGTCGTTAATAAATAAATCTATCTCCTGTTCATGGGGTAGTTCGTAATACAGCGGCGTATAGTCAcg < 2:181824/139‑1 (MQ=255)
aaCCGCGCGGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAATAAATCGATCGCCAGTTCATGGCGTAGTTCGCCATACAGCGGCGTATAGTCAcgc < 8:618412/140‑1 (MQ=255)
aCCGCGCGGACCTGCCCCCGTAAGTTTATCGAACGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAAGAAAGAAAACGATCGCCAGTTCATGGAGTAGGTCGTCTAACAGCGGCGTATATTCAcgcg > 2:1008326/1‑140 (MQ=255)
cgcgcgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGGCGTGCATAAAGAAATCGATCGCCAGTTAATGGCGGAGTTCGTCATTCAGCGGCGTTTAGTCCCGCGAc > 4:223007/1‑140 (MQ=255)
gcgcgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCTCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATAGAACGCCAGTTAATTGCGTAGTTAGTCATACAGAGGAGTATAGTAActcgc > 5:163041/1‑137 (MQ=255)
cgcgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCCTACAGCGGCGTATAGTCCCGCGACgg > 2:586913/1‑140 (MQ=255)
cgcgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGGATAGTCACGCGACgg > 3:884926/1‑140 (MQ=255)
cgcgGACCTGCCACCGTAAGTTTATCGCCCGGGTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGGTAGTCATACAGCGGCGGATATTCACGCGCCgg > 7:569932/1‑140 (MQ=255)
cgcgGACCGGCCACGGTAAGTTTATCGCCCGGTTTCGCCTGCAACGCCCCGCCGCTGGCGCCCCCACCGTCGTGAATAAAGAACTCGAGCGCCAGTTCATGGCGTAGTTCGGCATACAGCGGCGTATCGTCCCGCGAc < 6:883413/138‑1 (MQ=255)
cgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCCGCCGCTTGCGACCCCACCGTCGAGAATAAAGAAATAAATAGCCAATTCATGGGGGTTTTCGTAATAAAGCGGCGTATAGTCACGCGACGGTg > 4:760484/1‑140 (MQ=255)
ccACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTAGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGt > 8:844879/1‑140 (MQ=255)
ccACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGGAGTTAGTCATAAAGCGGCGGATAGTAAAGCGCCGGTGGGCGTggg > 8:219435/1‑139 (MQ=255)
cGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTGGTTAAAAAAGAAATCGATCGCCAGTTCATGGCGTTGTGCGTCATACAGCGGCTTATAGTCACGCGACGGTGGGCGTGGTcc < 5:248421/138‑1 (MQ=255)
cGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCACCCGCTGGCGACCCCACCGTCGTTAATAAAGAAATCGAGCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGGCACGCGACGGTGGGCGTGGTCCtt < 4:498737/140‑1 (MQ=255)
gTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCCCCGTCGTTAAAAAAGAAAACGATAGCCAGTTCAAGGCGGAGTTAGTCGTACGGCGGCGGATAGGCACGCGCCGGTGGGCGTGGGCCTTc > 7:708839/1‑140 (MQ=255)
gTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATAGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATATTCACGCGACGGTGGGCGTGGTCCTTc > 1:922383/1‑140 (MQ=255)
aaGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGAACGCCAGTTCATGGCGTAGTTCGTCAAACAGCGGCGTATAGAACCGCGACGGATGGCGTGGTGCTTc > 6:382718/1‑138 (MQ=255)
aaGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGGCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTc > 6:142255/1‑138 (MQ=255)
gTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTTAATAAAGAAATCGATCGCCCGTTCATGGCGTAGTGCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGc < 1:1045745/140‑1 (MQ=255)
gTTTACCGCCCTGTTTCGCCTGCATCCCCCAGCCGTTGTCGACCCCACCGTCTTGAATAAATAAATCTATACCCATTTCATGGCGTAGTTCGTAATACAGCGGCGTATAGAAACGCGACGGTGGGCGTGGTCCTTCCGGc < 2:413370/140‑1 (MQ=255)
tttATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGTATAAAGAAATCGATCGCCAGTTCATGGCGGAGTTGGGCATACATCGGCGTTTAGTCACGCGACGGGGGGCGTGGGCCGTCCGGcc > 1:1032176/1‑140 (MQ=255)
tttATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAAAAAAGAAAAAGATCGCCAGGTCATGGCGTAGTTCGTCATACAGCGGCGTATACTCACGCGACCGGGGGCGTGGTCCTTCCGGcc > 2:1103356/1‑140 (MQ=255)
tCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTGGTCATACAGCGGCGTATAATCCCGCGACGGTGGGCGTGGTGCTTCCGGGCAGAc > 2:73419/1‑140 (MQ=255)
gCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCAAGGCGTAGTTCGTCATACAGCGGCGTATAGTGAAGCGACGGTGGGCGTGGTCCTTCCGGCCAGAc > 6:437225/1‑138 (MQ=255)
cccGGTTTCGCCTGCATCGCCCAGCCGCGGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGAGGGCGTGGTCCTTCCGGCCAGACGAt < 8:1034442/140‑1 (MQ=255)
cccGGTTTCGCCTGAATCGCCCAGCCGCTGGCGACCCCCCCGTCGGTAATAAAGAAAGCGATGGCCAGTTCATGGCGTTGTTGGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGGGGTCCTTCCGGCCAGACg < 5:593987/138‑1 (MQ=255)
ccGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTAATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATg < 3:1191928/140‑1 (MQ=255)
ggTTTCGCCTGCATCGCCCAGCCGCTGGCGCCCCCACCGTCGTGAATAAAGCAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGACACTCGCCGGTGGGCGTGGTCCGTCCGGCCAGACGATGcc > 7:114762/1‑140 (MQ=255)
ggTTTCGCCTCCTTCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGCTCGCCAGTTCATGGCGTAGTTCGTCATACCGCGGCGTATAGGCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGcc < 8:1148318/140‑1 (MQ=255)
gTTTCGCCTGCATCGCCCCGCCGCTGGCGACCCCACGGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCTTCATACAGCTGCGTATATTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGccc < 7:1108803/140‑1 (MQ=255)
gTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGccc < 2:688160/140‑1 (MQ=255)
gTTGCGCCTGCAGCGCCCCGCCGCGGGCGACCCCACCGTCGGGAAAAAAGAAATCGAGCGCCTGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGc < 6:1159991/138‑1 (MQ=255)
ttCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTTAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCctc < 1:747802/140‑1 (MQ=255)
cAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCCCCAGTTAATGGCGTATTGCGTCAGACAGCGGGGTTTAGTCCCGCGCCGGGGGGCGTGGTGCGGCCGGCCAGGCGCGGCCCGCTTCCGTTGCCggg > 5:796605/1‑136 (MQ=255)
ccGCTGGCGACCCCACCGTCGTGCATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATTCAGCGGCGTATAGTCACGCGGCGGGGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCGTCCGTTACCGTTggcgg > 2:287804/1‑140 (MQ=255)
ccGCTGGCGACCCCACCGTCGTCAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTggc < 6:540001/138‑1 (MQ=255)
gCTGGCGACCCCACCGTCGTGAATAACGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGca < 3:45825/140‑1 (MQ=255)
gCTGGCGACCCCACCGGCGTGAATAACGAAATCGATCGCCAGTTCAGGGCGTAGTTCGTCATACCGCGGCGTTGAGTCCCGCGACGGTGGGCGGGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTggcgg < 6:923750/138‑1 (MQ=255)
cTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGGTCGTCATACAGCGGCGGATTGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGcac > 8:314338/1‑140 (MQ=255)
gggCTACCCCACCGTCGTTAATAATGAAATCGATCGCCTGTTCTTGGGGTTGTTCGTCATACAGCGGCGTTTCGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGca < 6:60443/137‑1 (MQ=255)
aCCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTGGTCATACAGCGGCGGATAGTAACGCGACGGTGGGCGTGGTCCTTACGGCCAGACGATGCCCGCTTCCGTTTCCGTTGGCGGCACAAattgcgtgg > 3:811672/1‑139 (MQ=255)
ccGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAagtgagtg < 5:724559/138‑1 (MQ=255)
ccGTCGTGAATAAAGAAATCGATCGCCAGTTCAGGGCGTTGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGcc < 2:858411/140‑1 (MQ=255)
ccGTCGTGAATAAAGAAATCGATCGCCAGTGCATGGCGTAGTTCGTCAAACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGcc < 4:98535/140‑1 (MQ=255)
ccGTCGTGAATAAAGAAATCGAGCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGcc < 2:477065/140‑1 (MQ=255)
gtGAATAAATAAATGGATCCCCAGTTCATGGCTTAGTTCTTCATAAACCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGtt < 1:181014/140‑1 (MQ=255)
gtGAAAAATGAACACGATCGCCAGTTCAGGGCGTAGTTCGTCATCCAGCGGCGTATCGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGtt < 4:1083356/140‑1 (MQ=255)
tGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTg > 2:258127/1‑140 (MQ=255)
aaTAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGCCGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCGTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTg > 5:184451/1‑138 (MQ=255)
aaTAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTTCCGTTGGCGGCACAAAGTGAGTGGCTGGTTg > 5:1036590/1‑138 (MQ=255)
aaTAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGGGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAg < 4:289507/140‑1 (MQ=255)
taaataaaTCGATGGCCTGTTCATGGCTTTGTTCGTCATCCAGCGGCTTTTTGTCACGCGACGGTGGGCGTGGTCATTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGa < 4:344885/140‑1 (MQ=255)
aGAAATCGATCGCCAGTTCATGTCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACTGTGGGCTTGGTCCTTACGGCCAGACGATGCCCTATTCCTTTAGCGTTGGAGGCACAAATTGAGTGGCTGGTTGAGGTaag > 7:428881/1‑140 (MQ=255)
aGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAaag > 1:700088/1‑140 (MQ=255)
taaaTCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGaaa < 6:1212736/137‑1 (MQ=255)
aaaTCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAaag > 6:798791/1‑138 (MQ=255)
aaaTCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAaag > 5:983529/1‑138 (MQ=255)
atcgatcgCCAGGTCATGGCGTAGTTCGTCCGACCGCGGCGTATAGTCCCGCGCCGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTGACCGTTGGCGGCACCAAGGGAGTGCCTGGTTGAGGAAagaaga > 4:564391/1‑140 (MQ=255)
gatcgCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAagag > 6:279281/1‑138 (MQ=255)
ccgCCCGTTCTTGGGGTAGTGGGTCATACACCGGGGTATAGACCCGCGACTGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTg < 2:127939/139‑1 (MQ=255)
ccAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCtg > 4:1031174/1‑140 (MQ=255)
tgtgcttGGCTTAGTACGTCCTACAGGGGCGTATATTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACTAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCtgtg < 3:377211/134‑1 (MQ=255)
tgTTCATGGCGTTGTTCGGCCATCTGCGGCGTATTGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCtg < 6:637192/137‑1 (MQ=255)
cgTTCATGGCGTAGTTGGTCTTAGTGAGGCGTAAAGTCACGCGACGGGGTGCGTGGTCCTTCCGGCCAGACGATGCGATCTTCCGTTACCGTTGGCGGCTCAAAGTGAGTGCCTGGTTGATGAAAGAAGAGCTTGCtgtg < 2:355628/139‑1 (MQ=255)
cgTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCtgtg < 7:17786/139‑1 (MQ=255)
aGTTCTTTGCGTATTTCGTAAAACCGCGGCGTATTGTCACTCGACGGGGGGCGTGGTCCTTCAGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGATGAAAGAAGAGCTTGCtgtg < 7:241862/140‑1 (MQ=255)
aGTTCTTGGCGTAGTTCCTCATAACGCGGCGAATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCtgtg < 7:338138/140‑1 (MQ=255)
aGTTCATGTGGTTGTTCGTCATACAGCGGCGTATACTCACGCGACGGTGGGCTTGGTCCTTCCGGCCAGACTATGCCCTCTTCCGTTAACGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCtgtg < 2:923622/140‑1 (MQ=255)
cGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGCCGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCaaa > 4:905303/1‑140 (MQ=255)
ttgTCATACAGCTGGGTATAGTCACGCGACGGTGGGCGTGGGCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 1:569266/138‑1 (MQ=255)
tggTCATCCTGGGGCGTATAGTCACGCGTCGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTAGCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 6:1188012/136‑1 (MQ=255)
tcttCATAGAGCGGCGTATCTTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 7:925691/137‑1 (MQ=255)
tCGTCTTACAGCGGCTTATCGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGGTACCGTTGGCGGCACACAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 2:869923/140‑1 (MQ=255)
tCGTCATCCAGCGGCTTATAGCCCCGCTACGGGGGGCGTGGTCCATCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 5:490309/138‑1 (MQ=255)
tCGTCATACCGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGACAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAACGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 4:712846/140‑1 (MQ=255)
tCGTCATACCGCGGCGTATAGTCACGCGACGGTGGGCGTGGGCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 7:847811/140‑1 (MQ=255)
tCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 3:1043954/140‑1 (MQ=255)
tCGTCAAACAGCGGGGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTGGCTGTGATCGTCAAAGCcgcg < 7:541164/140‑1 (MQ=255)
gcGTCATATTGCGGGCTATAGGCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGTCACAAAGTGAGTGCCGGGTTGAGGAAATAAGAGCTTGCTGGGATCGTCAAAGCcg < 6:828142/137‑1 (MQ=255)
gcGTCATACTGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 5:1149589/137‑1 (MQ=255)
gcGTCATACAGCGGCGTATAGGCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 1:398467/139‑1 (MQ=255)
acgccATACACCGGCGTACAGCGCCGCGAAGGTGGGCTTGGTCCTTCCGGCCAGACGCTGCCATCTTCCGTTACCGTTGTCGGCACAAAGTGAGTGCCTGGTGGAGTAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 7:358397/136‑1 (MQ=255)
cGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgc > 5:1202054/1‑138 (MQ=255)
gTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 6:484710/138‑1 (MQ=255)
cATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGAt > 8:462982/1‑140 (MQ=255)
cATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGAt > 4:9742/1‑140 (MQ=255)
tACAGCGGCGTATAGGCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGt < 1:686590/140‑1 (MQ=255)
gcggcgTATCGTCACGGGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaaaa < 4:1156319/140‑1 (MQ=255)
gcggcgTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaaaa < 2:52490/140‑1 (MQ=255)
gcggcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaaaa < 1:545681/140‑1 (MQ=255)
cggcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGCGATTGCTGTGATCGTCAAAGCCGCGCGATGTAAAAc > 8:749821/1‑140 (MQ=255)
cggcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaaa > 5:736754/1‑138 (MQ=255)
cggcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAAc > 1:44985/1‑140 (MQ=255)
cggcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAAc > 7:143360/1‑140 (MQ=255)
cggcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAAc > 2:1182128/1‑140 (MQ=255)
gcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCg > 1:834112/1‑140 (MQ=255)
cgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGt > 4:1105850/1‑140 (MQ=255)
tCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAgcgc > 3:150841/1‑140 (MQ=255)
aCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCt > 1:358339/1‑140 (MQ=255)
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CGAACCGCGCGGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCT > NZ_CP022686/1965035‑1965312
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
