Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A27 F2 I0 R1
|
73 |
6005.1 |
5484070 |
98.3% |
5390840 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,965,173 |
A→C |
15.6% |
R86R (CGT→CGG) |
nfeF ← |
NADPH‑dependent ferric chelate reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,965,173 | 0 | A | C | 15.6%
| 144.9
/ 4.0
| 102 | R86R (CGT→CGG) | nfeF | NADPH‑dependent ferric chelate reductase |
| Reads supporting (aligned to +/- strand): ref base A (30/52); new base C (4/14); total (35/67) |
| Fisher's exact test for biased strand distribution p-value = 2.85e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 104 total aligned reads displayed.
CGAACCGCGCGGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCT > NZ_CP022686/1965035‑1965312
|
cGAACCGCGCGGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGCCCCCACCGTCGTGAATAAAGAAATCGATCGCCCGTTAATGGCGTAGTTCGTCATACAGCGGCGTATTGTCAc > 1:382095/1‑140 (MQ=255)
cgcgcgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCCGCCGCTGGCGCCCCCACCGTCGTGATTTAAGAAATCGATCGCCAGTTCATGGCGTAGGTCGTAATACAGGGGGGGATAGTGAcgcgcc > 5:101900/1‑138 (MQ=255)
gcgcgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCCGCCGCTGGCGACCCCACCGTCGTGGATTAAGAAATCGATGGCCCGGGCATGGCGGTGGTGGGGATAGATCGGCGTATAGGAACGCGa > 7:362984/1‑138 (MQ=255)
gcgcgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGCCCCCACCGTCGTGCTTAAAGAAATCGATCGCCCGTGCATGGGGGAGTTCGTCATGCAGCGGCGTATAGTCCcgcgc > 8:44916/1‑137 (MQ=255)
cgcgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGCCCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGAGGAGTTCGTCATACAGCGGCGTATAGTCGCGCGCCgg > 5:378671/1‑140 (MQ=255)
cgcgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACCGCGGCGTATAGTCACGCGACgg > 2:23004/1‑140 (MQ=255)
cgcgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACgg > 4:219690/1‑140 (MQ=255)
gcgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCAACGCCCAGCCGCTGGCGACCCCCCCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGAAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGt < 6:396469/140‑1 (MQ=255)
cgGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGGGAATAAAGAAAACGATCGCCAGTTCATGGCGTAGTTCGTAAAACACCGGCGTATAGTCACGCGACgg > 7:150506/1‑138 (MQ=255)
aCCTGCCACCTTATCTTTATCGCCCGGTTGCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGGCGTGAATAAAGAAATCTATCGCCAGTTCATGGCGTAGTGCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGc < 6:604683/140‑1 (MQ=255)
cccACCGTAAGTTTATCGCCCGGTTTCGCCGGCAGCGCCCACCCGCTGGCGACCCCACCGCCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTGCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTgg < 1:141860/139‑1 (MQ=255)
gTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTTGGCGTGGTCCTTc > 4:640620/1‑140 (MQ=255)
aTCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGa > 6:62028/1‑140 (MQ=255)
cGCCCGTTTGCGCCGGCAGCGCCCCGCCGCGGGCGACCCCACGGGCGTCAATAAAGAAAGCTAGCGCCAGTTCATGGCGTAGTTCGAAAAACCGCGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACg < 1:393203/140‑1 (MQ=255)
ggTTGCGCCTGCATCGCCCAGCCGCGGGCGACCCCACCGGCGTGAATAAAGAAATCGATCGCCCGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGcc < 1:154363/140‑1 (MQ=255)
ttCGCCTGAATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAAAAAATAAATCGATGGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGGCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCctc < 3:508518/140‑1 (MQ=255)
ccTGCATCGCCCAGCCGCTGGCGACCCCACCGGCGTGAATAAAGAAATCGCTCGCCAGGTGATGGCGTTGTTGGTGATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCGTCCGGCCAGACGCTGCCCGCttgg > 2:276353/1‑138 (MQ=255)
cTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAAAAAATAAATCGATGGCAAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCg < 1:405017/140‑1 (MQ=255)
tCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAGATCGATCGCCAGTTAATGGCGTAGTTCGTCATACAGCGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGGCGATGCCCTCTTCCGTTa > 7:327080/1‑138 (MQ=255)
gcGCCCCGCCGCTGGCGACCCCACCGTCGTGAATAACGAAATCGCTCGCCAGTTCATGGCGTAGGTCGTCATACCGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGAGGCCCTCTTCCGTTAcc < 3:531215/139‑1 (MQ=255)
gcGCCCAGCCGCGGGCGACCCCACCGTCGTGAATAAAGAAATCGTTCGCAAGTTAATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTAcc < 1:171034/139‑1 (MQ=255)
cccAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGtt > 1:567930/1‑140 (MQ=255)
cgCCGCTGGCGACCCCACCGTCGTGAAAAAATAAATCGATCGCCCGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTggc < 6:645662/139‑1 (MQ=255)
ccGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTTTAGTCACGCGGCGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGGTggcgg > 3:556908/1‑140 (MQ=255)
ccGCTGGCGACCCCACCGGCGTGAATAACGAAATCGATCGCCAGTTCATGGCTTAGTTCGTCATACTGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTggc < 8:213646/138‑1 (MQ=255)
gggCGACCCCACCGGCGTGAATAAACAAATCGCTCGCCAGTTCATGGCGTAGGGCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGcaca < 5:249386/139‑1 (MQ=255)
gggCGACCCCACCGGCGTCAATAAAGAAATCGAGCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGACACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGcaca < 3:700345/139‑1 (MQ=255)
gggCGACCACACCGTCGTTAATAAATAAATCGAGCGCCTGTTCTTGGCGTAGTTCGTCAAACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGcaca < 5:142306/139‑1 (MQ=255)
ggCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATTGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCCTTGGCGGCACaa > 2:140322/1‑140 (MQ=255)
ggCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGCCGCTGCCCTCTTCCGTTACCGTTGGCGGCACaa > 1:606113/1‑140 (MQ=255)
cGACCCCACCGTCGTCAATAAAGAAATCGCTCGCCAGGTCAGGGCGTAGTGCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAag < 6:513494/140‑1 (MQ=255)
gACCCCACGGTGGTTAATAAATAAATCTATCGCCAGTTCTTGGCGTAGTTCGTAATACAGCGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAagt < 1:274139/140‑1 (MQ=255)
gACCCCACCGTCGTGAATAAATAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAagt < 4:82315/140‑1 (MQ=255)
ccccACCGTCGTGAATAAATATATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAagt < 7:658772/138‑1 (MQ=255)
ccccACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAagtga > 4:308750/1‑140 (MQ=255)
ccccACCGTCGTGAATAAAGAAATCCATCGCCAGTTGATGGCCTAGTTCGTCATACAGCGGCGCATAGTCACGGGACGGTGGGCGTGGTCCTTCCGGCCCGACGATGCCCTCTTCCGGTACCGGTTGCGGCACAAagtta > 4:122411/1‑138 (MQ=255)
cACCGTCGTGAATAAAAAAATCGATCGCCAGTTCATGGCTTTGTTCGCCATACAGCGGCGTATAGTCACGCGACGGTGGGCGGGGGCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGGTGGCGGCACAAagtgag < 7:46010/138‑1 (MQ=255)
cACCGTCGTCAATAAAGAAATCGAGCGCCAGTTCATGGGGTAGTTCTTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAagtgagtg < 3:546531/140‑1 (MQ=255)
ccgccgTTAATAAAGAAATCTATCGCCATTTCATGGCGTAGTTCGACATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGcc < 2:619905/140‑1 (MQ=255)
cgtcgtGAATAAAGAAATCTATCGCCAGTTCATGGCGTAGTTCGTCATACCGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCt < 2:192393/140‑1 (MQ=255)
cgtcgtGAATAAAGAAATCGATCGCCAGTTCATTGGGTAGTTCGTCATAAAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTACGGCCAGACGAAGCCCTCTTCCGTTAACGTTGGCGGCACAAATTGAGTGcca > 2:401279/1‑139 (MQ=255)
tcgtTAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTGCGTCATACAGCGGCGTATAGCCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTgg < 3:274091/140‑1 (MQ=255)
gtGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTTTAGTCCCGCGCCGGTGGGCGTGGTCCTTCCGGCCCGACGCTGCCCTCTTCCGTTACCGGTGGCGGCCCAAAGTGAGTGCCTgggt > 3:334796/1‑138 (MQ=255)
aaTAAAGAAATCTATCGCAAGTGCTTGGCGTAGTTCGTCATAATGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCGTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCGGGTTGAg < 6:581321/140‑1 (MQ=255)
aaTAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGCTGCCCTCTTCCGTTACCGGTGGCGGCACAAAGTGAGTGCCTGGTTGAg > 6:273191/1‑140 (MQ=255)
aGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCGTCCGTTACCGTTGGCGGCACCAAGTGAGTGCCGGGTTGAGGAaag > 2:82341/1‑140 (MQ=255)
taaaTCGATCGCCAGTTCATGGCGTAGTGCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAaaga < 2:21069/139‑1 (MQ=255)
caaaTCGAGCGCCATTTCATGGCGTAGTTCGTCATACAGCGGGGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAaaga < 1:97201/139‑1 (MQ=255)
aaaaTCGATCGCCAGTTCATGGGGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAaaga < 1:245894/139‑1 (MQ=255)
aaaaTCGATCGCCAGTTCATGGCGTTGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGaaa < 7:367223/137‑1 (MQ=255)
cgatcgCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAagaaga > 8:141620/1‑138 (MQ=255)
tcgCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTg < 4:320927/140‑1 (MQ=255)
ttttCTTGGGGTCGTTCGTCATCCAGCGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGGTGGCGGCACAAAGTGAGTGCCTGGTGGAGGAAAGAAGAGCTTGCtg < 8:404037/136‑1 (MQ=255)
tttCATGGCTTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGa < 3:177038/139‑1 (MQ=255)
aTGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGt > 1:94558/1‑140 (MQ=255)
ggCGTTGTTCGTCATCCCTGGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGAAGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCa < 1:446534/140‑1 (MQ=255)
ttCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGcc > 7:217755/1‑138 (MQ=255)
ttCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGcc > 8:502555/1‑138 (MQ=255)
tcttcttACTGCGGCTTTTAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACATAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 1:532339/134‑1 (MQ=255)
tagtaaTACTGCGGCGTCTAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCGCTTCCGTTACCGTTGGCTGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 2:54207/135‑1 (MQ=255)
tCGTCATTCTGGGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTGCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACATAGTGTGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 8:266647/138‑1 (MQ=255)
tCGTCATACCGCGGCGTTTAGTCACGCGACGGTGGGGGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 3:436782/140‑1 (MQ=255)
tCGTCATACCGCGCCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 6:376267/140‑1 (MQ=255)
tCGTCATACAGCGGCTTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 3:433370/140‑1 (MQ=255)
tCGTCATACAGCGGCGTATTGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 6:278120/140‑1 (MQ=255)
tCGTCATACAGCGGCGTATAGTCCCGCGACGGTGGGCGGGGGCCTTCCGGCCAGACGATGCCCTATTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 8:356487/138‑1 (MQ=255)
tCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 2:656250/140‑1 (MQ=255)
tCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 6:496089/140‑1 (MQ=255)
tCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 3:343869/140‑1 (MQ=255)
tCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 5:62028/140‑1 (MQ=255)
tCGTCATACAGCGGCGAATAGTCCCGCGACGGTGGGCGTGGGCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 1:463226/140‑1 (MQ=255)
tCGTAATCCAGCGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGGTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 8:42942/138‑1 (MQ=255)
gcGTCCTACTGGGGCTTTTAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 8:196244/137‑1 (MQ=255)
gcGTCCTACCGCGGGGTCTCGGCCCGCGACGGTGGGCGTGGTACTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTGGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 7:77353/137‑1 (MQ=255)
gcGTCATCCCGCGGCGTATAGGCCCGCTACGGTGGGCGGGGGCCTTCCGGCCAGACGATGCCCTCTGCCGTTACCGTTGGCGGCACAAAGTGAGTGCCGGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 6:381757/139‑1 (MQ=255)
gcGTCATACCGCGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 7:179179/137‑1 (MQ=255)
gcGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 5:219960/139‑1 (MQ=255)
gcGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 1:609788/139‑1 (MQ=255)
gcGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 2:570332/139‑1 (MQ=255)
gcGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcg < 7:43539/137‑1 (MQ=255)
ccGTCATACAGCGGCTTATAGGCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcg < 2:114171/139‑1 (MQ=255)
gttCATACCGCGGCGTATAGTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgc < 7:465494/136‑1 (MQ=255)
gTCATACAGCGGGGTATCGTCCCGCGACGGTGGGCGGGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCcgcgcg < 5:111561/140‑1 (MQ=255)
ttACAGCGGGTTATAGTCTCGCGACGGTGGGCGTGGGCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATg < 6:236525/139‑1 (MQ=255)
aTACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGa < 8:516592/138‑1 (MQ=255)
tACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGAt > 8:654895/1‑138 (MQ=255)
tACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGATTGCTGTGCTCGTCAAAGCCGCGCGAt > 7:287596/1‑138 (MQ=255)
ggggcgTATACTCCCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGCCACAAAGTGAGTGCCTGGGTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa < 7:513813/136‑1 (MQ=255)
gcggcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaaaa < 4:443782/140‑1 (MQ=255)
gcggcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaaaa < 2:567930/140‑1 (MQ=255)
gcggcgTATAGTCACGCGACGGTGGGCGTGGGCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGGTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa < 7:54064/138‑1 (MQ=255)
ccggcgAATAGCCACGCGACGGAGGGCGTGGGCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGGGGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGACGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa < 7:328919/137‑1 (MQ=255)
gcgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAAccc > 2:248024/1‑139 (MQ=255)
cgTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAagtgagtg > 1:279793/1‑82 (MQ=255)
agTATAGTCACGCGACGGTGTGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCATTGGCGGCCCAAAGTGTGTGCCTGGTTGAGGAAAGAAGAGCTAACTGTGATCGTCAAAGCCGCGCGATTTAAAACCGt > 4:694028/2‑140 (MQ=255)
gTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCg < 7:5802/138‑1 (MQ=255)
tataGTCACGAGACGTTGGGCGTGGTCCTTCCTGACAGACGATGCCCTCTTCCGTTACAGTTGGCGGCACAAAGTGACTGCCTGGTTGAGGAAAGAAGAGATTGCTGTGATCGTAAAAGCCGCGCGATGTAAAACCGt > 8:574117/1‑138 (MQ=255)
tCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAgcgc > 5:352036/1‑140 (MQ=255)
aCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCt > 3:579296/1‑140 (MQ=255)
aCGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCt > 1:444434/1‑140 (MQ=255)
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CGAACCGCGCGGACCTGCCACCGTAAGTTTATCGCCCGGTTTCGCCTGCATCGCCCAGCCGCTGGCGACCCCACCGTCGTGAATAAAGAAATCGATCGCCAGTTCATGGCGTAGTTCGTCATACAGCGGCGTATAGTCACGCGACGGTGGGCGTGGTCCTTCCGGCCAGACGATGCCCTCTTCCGTTACCGTTGGCGGCACAAAGTGAGTGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCT > NZ_CP022686/1965035‑1965312
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
