Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F12 I0 R1
|
131 |
9881.0 |
7547414 |
98.3% |
7419107 |
134.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,546,394 |
A→C |
24.0% |
V95G (GTT→GGT) |
waaG ← |
glycosyltransferase family 4 protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,546,394 | 0 | A | C | 24.0%
| 156.4
/ 16.6
| 123 | V95G (GTT→GGT) | waaG | glycosyltransferase family 4 protein |
| Reads supporting (aligned to +/- strand): ref base A (55/34); new base C (3/29); total (59/64) |
| Fisher's exact test for biased strand distribution p-value = 2.33e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 127 total aligned reads displayed.
GCAGCTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGT > NZ_CP022686/2546257‑2546528
|
gcagcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATaaa > 6:702279/1‑138 (MQ=255)
cagcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAACGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGt > 4:413253/1‑140 (MQ=255)
gcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGt > 6:226470/1‑138 (MQ=255)
ggtgtCGGCTTGCCCTGTGCGACGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAg < 3:958262/139‑1 (MQ=255)
tgtCGGCTTGCCCTGTTCGAAGGTTTCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGTCATAACAAACA‑TCAGCGGCATAATAAACGTCCAg > 8:116365/1‑138 (MQ=255)
tgtCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAg > 8:788969/1‑138 (MQ=255)
gtCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGc > 7:639801/1‑138 (MQ=255)
tCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGcc > 7:620909/1‑138 (MQ=255)
cGGCTTGCCCGGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGccc > 2:625834/1‑138 (MQ=255)
ggCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGcccc > 2:20874/1‑138 (MQ=255)
cTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCAtttt > 6:374375/1‑138 (MQ=255)
gTTCGAAGGTTGCCCGCTCAAAGGCGGCATATTGGCGATATCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTttat < 6:357346/138‑1 (MQ=255)
gTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTttat < 7:566947/138‑1 (MQ=255)
gTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGGCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTttat < 6:422266/138‑1 (MQ=255)
ttCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAACCA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 4:785627/1‑140 (MQ=255)
cGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTTTCCTGCGCTACTTTCTCGGAATAACCAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 7:355744/1‑138 (MQ=255)
cGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 6:378013/1‑138 (MQ=255)
cGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 7:782365/1‑138 (MQ=255)
cGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAAAGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 2:98397/1‑138 (MQ=255)
aGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCa > 4:931466/1‑140 (MQ=255)
gTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCa > 8:638258/1‑138 (MQ=255)
gTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCa > 8:642503/1‑138 (MQ=255)
tcccGCTCAAAGGCGGCATAATGGAGATAACGTGACGTCAGGCGATAGAAAAAGCCGGTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAACAGTCCAGCCCCGGCATTATATTTAATCCAACggc > 4:174756/2‑138 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGCCGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCCGCCCCGGCATTTTATTAAATCCAACGAc > 4:506781/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 3:273675/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 4:943687/1‑140 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAACCA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 7:656504/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 6:456476/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 7:494193/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 6:571287/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 1:66225/1‑138 (MQ=255)
gggcggaATAATGGCGAAAACGTCACGACAGGCGATTCAAAACGCCTTTCTCCGGCTCTACTTTCTCGGAATAACAAACT‑TCAGCGCCATAAAAACCGACCAGCCCGGGAATTTTATAAAATCCAACGACTCTATCGACg < 4:287568/139‑1 (MQ=255)
cggcggcATATTGGCTATAACGTGCCTGCTGGCGTTATAAAACGCCTTTCTCCTGCGCTACTTTCGCGCCAAAACAAACA‑TCTGCGCCATAATAACCGTCCCGCCCCGGCATTTTATTAAAGCCCACGACTCTATCGa < 6:309114/137‑1 (MQ=255)
cggcggcATAATGCCTATACCGTGACGGCAGGCTATAGAAAAAGCATTTCTCCTGCGCTACTTTCTCGGCAAAACAAACA‑TCCGCGGAATAAAAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACg < 4:446093/139‑1 (MQ=255)
gcgaaatatTGGCGATAAGGTTTTGTCTGGGTAGAGAAAAAGCGTTTCTCCTGGGCTACTATAGCGGAATAAAAAACA‑TCTGGCGAAAATTAAACGTCCAGCCCGGGAATTTTATTAAATCCAACGACTCTATCGACg < 2:848458/133‑1 (MQ=255)
atatTGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAAAACAAACA‑TCCGCGGCATAATAACCGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtg < 7:221371/138‑1 (MQ=255)
tAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt > 1:299318/1‑138 (MQ=255)
ggCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCAc > 8:43876/1‑138 (MQ=255)
caTAACGTGACGACCGGCGAAAGAAAACTCCTTGCTCCTGCGCTACTTTTTCGGCATAACAACAA‑TCAGCGCCATAATAACCGTCCCCCCCCGGCATTTTATAAAATCCCACGACTCTATCGACGGGGTGTTCACGTa < 2:915772/137‑1 (MQ=255)
aTAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 4:833268/1‑140 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACACACA‑TCAGCGGCATAATAACCGTCCAGCCCCGGCAGTTTATTAAATACAACGACTCTATCGACGGGGTGTGCACGTAAAt > 5:703009/1‑138 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACg > 7:882541/1‑80 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 1:186086/1‑138 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 5:849333/1‑138 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 8:153649/1‑138 (MQ=255)
gTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGtt > 7:215521/1‑138 (MQ=255)
gACGTCTGGCTATAGAAAACCCCTTTCTCAGCCCCAACTTGAGCGCCA‑AACAAAAACTCAGCGCCAAAAAAACCCGCCAGCCCCGCAATTTTATAAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGtttt < 6:445671/138‑1 (MQ=255)
gTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAATCTATAGACGGGGTGTTCACGTAAATGTTTTTga > 6:643009/1‑137 (MQ=255)
tatatAAAACGCGTTTCTCCTGCGCTAATTTCTCGCCAAAACACCCA‑CCCCCGGCAAAATAACCGTCCCGCCCCGGCATTTTATTAAACCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAgg < 2:282961/137‑1 (MQ=255)
taTAGAAACCGCATTTCACCGGCGCTACTTTCTCGGAAAACCAAACA‑CCCGCGGAATAATAACCGCCACCCCCCGGAATTTTATTAACCCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCa < 3:669446/139‑1 (MQ=255)
gATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCACCGACTCTATCGCCGGGGGGTTCACGTAAAGTTTTTTGCCCCCAgg > 2:215764/1‑138 (MQ=255)
aacaaaaaCCCTTTCTCCTGCGCTACTTTCTCGGAATAACAAACA‑TCCGCGGCATAATAACCGCCCCGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCa < 7:502348/135‑1 (MQ=255)
gAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGTGTGTTCACGTAAATCTTTTTGCACCCAGCCaaa > 6:882504/1‑138 (MQ=255)
acccgtttCTCCTGCTCTACTTTCTCGGCAAAACAAACA‑ACAGCGGCAAAATAACCGTCCTCCCCCGGAATTTTATTAACACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAatat < 6:758912/133‑1 (MQ=255)
tctcCGGCGCTAATTTCGCGGAATAACAAACA‑TCAGCGGCAAAAAAAACGTCCCGCCCCGGATTTTTATAAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg < 4:791872/140‑1 (MQ=255)
actcCTGGGCTAATTGCTGGTCATAAAAAAAT‑CCCGCGCAATATTAACCGGCCACCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCAt < 2:214155/137‑1 (MQ=255)
tcCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg > 7:470014/1‑138 (MQ=255)
gccTGCGCTACTTTCTCGTCATAACAAACA‑TCAGCTGCATAATAAACGACCAGACCCGGCATTTTATAAAATCAAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg < 5:702359/137‑1 (MQ=255)
acgggcgcTAATTTCTCGCCAAAACAAACT‑TCCCCGGCATAATAACCGTCCAGCCCCGCCATTTTATTAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTgcg < 4:146438/136‑1 (MQ=255)
ccTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTgc > 6:286612/1‑138 (MQ=255)
gtccgcTACTTTCTCGCCATAACAAACA‑TCAGCGCAATAATAACCGTCCCGCCCCGCCATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTgcg < 6:609053/135‑1 (MQ=255)
gggcgaTATTTTCTCGGAATAACAAAAA‑TCCGGGCAATATAAAACCCCCGCCCCCGGATTTTTATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTgcg < 5:799178/136‑1 (MQ=255)
gcTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCg > 6:678413/1‑138 (MQ=255)
taatttCTCGCCAAAAAAAAAA‑TCAGGGCAATAAAAAACGGAACGCGCCGCCTTTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGAt < 3:468380/137‑1 (MQ=255)
tACTTTCTCGTAAAAACAAACA‑TCAGCGGAATAATAACCGCCCAGCCCCGGAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg < 1:562668/138‑1 (MQ=255)
tACTTTCTCGGCATAAAAAACA‑TCAGCGGCATAATAACCGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg < 2:912675/138‑1 (MQ=255)
aaCTTTCTCGGCATAACAAACA‑TCCGCGCCAAAATAACCGTCCCGCCCCTTCATTTTATTAAATCCCACGACTCTCTCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg < 2:895987/137‑1 (MQ=255)
aCTTTCTCGGCATAACAAACA‑TCAGCGGCTTAATAACCGTCCAGCCCCCGCATTTTATTAAATCCCACTACTCTATCGACGGGGTGTTCACGTAAAGGTTTTTTGACCCAAGTAAAAGATTCGCCATTGCGCCCGTGa > 8:868033/1‑138 (MQ=255)
ttgtcGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTTTTAAATCCAACGACTGTATCTACGTGGTTTTCCGGTATATGTTTTTGCACCCCGGCAAAATTTTCCGCATTGAGCACGGGATTg > 8:103963/4‑138 (MQ=255)
aaTAAAAAACA‑TCCGGGGCAAAATAAACGTCCACCCCGGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGAt < 3:230096/139‑1 (MQ=255)
aTAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGAtt > 3:425696/1‑140 (MQ=255)
aacaaaca‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGAtt > 8:527359/1‑138 (MQ=255)
aaca‑TCTCCGGAATAATACCCGTCCAGCCCCGGCATTTTATAAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 5:271188/138‑1 (MQ=255)
aaca‑TCAGCGGCATAATAAACGTCCTGCCCCGGCATTTTATTAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGAGTGGTATGCGATTTAAc < 8:531353/138‑1 (MQ=255)
aaca‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 4:518398/140‑1 (MQ=255)
a‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCgg > 7:196973/1‑138 (MQ=255)
aacAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCa > 3:14733/3‑140 (MQ=255)
tcATAATAAAGGTCATGCGCTGGATTTTTTATATAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGGACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGAGAATTAACCGGCTCTTTg < 1:81910/137‑1 (MQ=255)
gCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTg < 2:299318/138‑1 (MQ=255)
cctacataaCCGTCCCGCCCCGGCATTTTATAAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGAt < 3:871610/135‑1 (MQ=255)
ccATAATAACCGTCCTCCCCCGCCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGAt < 4:137100/139‑1 (MQ=255)
caaaaataaCCGTCCAGCCCCGGAATTTTATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTTGTATGCGATTTAACCGGCACTTTg < 7:116365/134‑1 (MQ=255)
ctaaatacACGTCAGCCCCCGGAATTTTTTTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 4:275554/137‑1 (MQ=255)
cATAATAACCGTCCCGCCCCGGCATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa < 2:186086/138‑1 (MQ=255)
cATAATAAACTACCAGCCCCGGCATTTTATAAAATCCAACGACTCTATCGACGGGGGGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 4:769788/140‑1 (MQ=255)
cATAATAAACGGACCGCCCCGGCATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa < 7:281615/138‑1 (MQ=255)
cATAAAAAACGTCCCGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 3:429847/140‑1 (MQ=255)
aataatcAACTGCCAGCCCCGGCTTTTTATTAAAACCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa < 1:33652/137‑1 (MQ=255)
aataataCACGGCCAGCCCCGTCATTTTATTAAATCCCACGACTCTATCGACGTGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTTGTATGCGATTTAACCGGCACTTTGATc < 4:898058/139‑1 (MQ=255)
aaaaataaCCGTCCAGCCCCGGCTTTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 3:438744/137‑1 (MQ=255)
ataaaaCGCCCACCCCCGCCATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCCCCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCa < 7:269830/135‑1 (MQ=255)
aataaCCGGCCCGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCa < 5:694202/138‑1 (MQ=255)
aataaCCGCCCCGCCCCGGATTTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCCGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCa < 7:791585/138‑1 (MQ=255)
aataaACGTCCCGCCCCGGAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCa < 1:434074/138‑1 (MQ=255)
aataaACGTCCCCCCCCGGAATTTTATAAAAGCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt < 4:29774/140‑1 (MQ=255)
aataaACGTCCACCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt < 3:769679/140‑1 (MQ=255)
aaaaaaCGTCCCGCCCCGGCTTTTTAATAAAACCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCa < 1:384325/135‑1 (MQ=255)
aaaaaaCGACCCGCCCCGGCATTTTATAAAACCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCa < 7:638258/135‑1 (MQ=255)
ataaACGTCCAGCCCCGGCTTTTTATTAAATCCAACGACTCTATCGACGGGGGGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGAGAGAGGTATTCGATTAAACCGGCACTTTGATCAg > 6:88860/1‑138 (MQ=255)
ataaACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAg > 7:321079/1‑138 (MQ=255)
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GCAGCTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGT > NZ_CP022686/2546257‑2546528
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
