Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F11 I0 R1
|
249 |
11230.8 |
10274356 |
98.4% |
10109966 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,546,394 |
A→C |
11.1% |
V95G (GTT→GGT) |
waaG ← |
glycosyltransferase family 4 protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,546,394 | 0 | A | C | 11.1%
| 275.2
/ 2.1
| 151 | V95G (GTT→GGT) | waaG | glycosyltransferase family 4 protein |
| Reads supporting (aligned to +/- strand): ref base A (85/44); new base C (2/19); total (88/63) |
| Fisher's exact test for biased strand distribution p-value = 1.07e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 155 total aligned reads displayed.
CAGCAGCTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGT > NZ_CP022686/2546255‑2546528
|
gcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGt > 3:236112/1‑138 (MQ=255)
gcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGt > 3:673558/1‑138 (MQ=255)
tgtgTCGGCTTGCCCTGTACGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGAGAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTACTCGGCATAACAAACATCAGCGGCATAATAACCGTCCAg > 8:1145546/1‑140 (MQ=255)
tgtCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGcc > 6:722938/1‑140 (MQ=255)
gtCTGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGccc < 6:680701/140‑1 (MQ=255)
tCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGcccc > 7:100383/1‑140 (MQ=255)
tCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGcccc > 1:780676/1‑140 (MQ=255)
gCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCAGGCAt > 4:175061/1‑138 (MQ=255)
cccTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCAtttt > 5:160332/1‑140 (MQ=255)
cccTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCAtttt > 2:718454/1‑140 (MQ=255)
cccTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCGTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCAattt > 8:779365/1‑140 (MQ=255)
cTGTTCGAAGATTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCTGCATAATAAACGTCCAGCCCCGGCAtttt > 4:71132/1‑138 (MQ=255)
gTTCTAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATATAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTttat < 3:1184458/138‑1 (MQ=255)
gTTCGCAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTttatta < 1:123424/140‑1 (MQ=255)
ttCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 5:222596/1‑140 (MQ=255)
ttCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 5:295138/1‑140 (MQ=255)
ttCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 6:263391/1‑140 (MQ=255)
tCGAAGGTTGCCCGCGAACAGGCGGCATAATGGCGATAACGTGACGTCCGGCGATAGAAAACGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATCACCGTCCAGCCCCGCCATTTTATTaaa < 8:795010/140‑1 (MQ=255)
cGAAGTTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 3:904044/1‑138 (MQ=255)
cGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 4:107671/1‑138 (MQ=255)
cGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 3:694607/1‑138 (MQ=255)
cGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATATTATTaa > 4:1187560/1‑138 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAGCGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 8:7261/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTcc > 5:1047323/1‑111 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAACTCCAACGAc > 7:680150/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 7:625143/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 2:605056/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 7:512064/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 1:36478/1‑140 (MQ=255)
aGGCGGAATAATGGCGATAACGTGACGTCAGGCTATATAAAAAGCCTTTCTCCTGCGATACTTTCTCGGCATAACAAACATCCGCGGCATAATAAACGCCCAGCCCCGTCATTTTATTAAATCCAACGACTCTATCGa < 4:977384/138‑1 (MQ=255)
gcATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtg > 7:838601/1‑140 (MQ=255)
cATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt > 8:764288/1‑140 (MQ=255)
cATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt > 5:908078/1‑140 (MQ=255)
cATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt > 2:799817/1‑140 (MQ=255)
aaTAATGGCTATACCGTGCCGGACGGCGATATAAAAAGCGTTTCGCCTGCGCTACTTTCTCGGAATAACAAACATCAGCGTCAAAATAACCGTCCTCCCCCGGCTTTTTATTAAATCCAACGACTCTATCGACGGGgtgt < 2:525260/139‑1 (MQ=255)
aaTAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATGACAAACATCAGCGGAATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt > 6:27045/2‑140 (MQ=255)
aTAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtg > 3:853338/1‑138 (MQ=255)
tGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCTTTTTATTAAATCCAGCGACTCTATCGACGGGGTGTTCACg > 8:1103737/1‑140 (MQ=255)
gCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTGTATCGACGGGGTGTTCAAGTa > 2:1078715/1‑140 (MQ=255)
gCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCGACTTTCTAGGCATAACAAACATAAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAAGGACTCTATCGACGGGTTGTTCACGTa > 5:601890/1‑140 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 4:400007/1‑138 (MQ=255)
gACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTGTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAACTGTTTTTg > 1:558950/1‑140 (MQ=255)
cGTCAGGCGATAGAAAAAGCCTATCACCTGCCCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCTGAATTTTATTAAAACCAACTACTCTAACGACGCGGTGATCACGTAAATGTTTTTg > 3:553003/1‑138 (MQ=255)
ggCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAg > 2:1329307/1‑140 (MQ=255)
ggCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAg > 1:566351/1‑140 (MQ=255)
ggCGATAGAAAAAGCCTTTCTCCTGCGCTACTGTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGTGAGTTCACGTAAATGTTTTTGCACCCAg > 8:318066/1‑140 (MQ=255)
aGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCaaaa > 1:374260/1‑140 (MQ=255)
ggcTTTCTCCGGCGCAACTTTCTCGCCAAAACAAAACTCCGCGCCTTAAAAAACGGCCCGCCCCGGCATTTTTTTAAATCCAACGACTCTATCGACGGGGGGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCg < 2:1025355/138‑1 (MQ=255)
cTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCa > 5:115001/1‑140 (MQ=255)
ttCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCAtt < 8:512064/140‑1 (MQ=255)
tctcCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg > 7:673228/1‑140 (MQ=255)
tctcCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCAGCATTg > 1:1168943/1‑140 (MQ=255)
tctcCTGCGATACTTTGCCGGCAAAACACACAGCAGGGGAAAAATAACCGGCCCGCCCCGGAATTTTATTAATTCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg < 2:641020/140‑1 (MQ=255)
tcCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAACTCCAACGACTCTATCGACGGTGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg > 4:326281/1‑138 (MQ=255)
tcCTGCGCTAATTTCTCGGCAAAAAAAACACCCGCGGAATAATAACCTCCCAGCCCCGGCATTTTATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg < 4:236112/138‑1 (MQ=255)
cccTGCGCTACTTGTCCGCAATAACAAACATCAGCGTAATAATAACCGTCCCGCCCGGGAATTTTATTAAAACCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTacg < 5:257452/139‑1 (MQ=255)
acgtccgcTATTTTCTCGTAAAAACAAACATCCGCGTCTTAATAAACGTCCAGCCCGGTAATTTTATTAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg < 3:384681/133‑1 (MQ=255)
atGCCCTTCTTTCTCGTAATAAAAAACATCAGGGCCAAAATAACCTTCCAGCCCGGTAATTTTTTTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGcc < 1:851972/139‑1 (MQ=255)
gcgcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGGAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGAGCCCg > 7:1181024/1‑140 (MQ=255)
cgcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGt > 5:1217505/1‑140 (MQ=255)
tACTTCCTCGCAATAACAAACATCAGCGGAAAAATAAACGGCCCGCCCCGGCATTTTATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGAt < 8:240339/140‑1 (MQ=255)
cTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGCCGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGAGAGTg > 8:409864/1‑140 (MQ=255)
cTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAATTGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTg > 6:132472/1‑140 (MQ=255)
tctcGCAATAAAAAACATCCCCGGCTTAATAAACGGCCAGCCCCGGCATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTa < 6:405556/140‑1 (MQ=255)
tcGGCTTAACAAACTTCTGCGGAATAATAAACGTCCGGCCCCGCCATTTAATTAATTCCCACGACTCTATCGACGGTGTGTTCACGTAAATGTGTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATg < 2:734927/140‑1 (MQ=255)
tcGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATACAACGCCTCTATCGACGGGGTTTTAACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGGCCGTGATAGGTATg > 6:541083/1‑140 (MQ=255)
gcGGCAAAACCAACATCAGCGGCATATTAAACGGCCCGCCCCGGCATTTTATTAAACCACACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTagg < 2:734919/139‑3 (MQ=255)
aTAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGAtt > 2:650743/1‑140 (MQ=255)
aTAACAAACATCAGCGGCATAATAAACGTCCAGACCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCAGCATTGCGCCCGTGATTGGTATGCGAtt > 5:694506/1‑140 (MQ=255)
cacctaccAGCGGCATAATAAAGGTCCAGCCCAGCAATTTTATAAAAACCCACGACTCTATCGACGGGGTGTTCACGTAAATTTTTTTGCACACAGGCAAAATATTCCGCATTGAGCCCGTGATTGGTATGCGATTTAAc < 8:704098/133‑1 (MQ=255)
atatccAGCGCCATAATAAAGTGCCAGCCCCGTCATTTTATATAAACACACGACTCTATCTACGCGGTGTTCACGTATATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCTTGATTGGTATGCTATTTAAc < 4:767145/133‑1 (MQ=255)
aacaacAGCGTAATAATAACCGCCCCGCCCCGGATTTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 4:1267928/138‑1 (MQ=255)
aacaacAGCGGCAAAAAAAACGTCCCGCCCCGGCATTTTATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 7:836284/140‑1 (MQ=255)
aacaTCTGCGGCATAATAAACGTCCAGCCCCGGAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 1:173619/140‑1 (MQ=255)
aacaTCCGGGCCATAATAAACGCCCTGCCCCGGAATTTAATAAACTCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 4:882308/138‑1 (MQ=255)
aacaTCCGCTGAATAATAAACCTACAGCCGGGTCTTTTTTTTAAATCCAAAGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 3:302484/138‑1 (MQ=255)
aacaTCAGCGGCATAATAAACGCCCAGCCCCGGCATTTTATTAAATACAACGACTCTATCGACTGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 4:476878/138‑1 (MQ=255)
aacaTCAGCGGCAAAATAACCGCCACGCCCCGGAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 7:285814/140‑1 (MQ=255)
aacaTCAGCGACTTAATAAACGACCCGCCCCGTATTTTTATAAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 1:754606/140‑1 (MQ=255)
aaaaTCAGCGGCATAATAACCGTCCAGCCCCGGCATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 1:750586/137‑1 (MQ=255)
aTCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTAACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTAGTCGATTTAACCGGcc > 1:1093657/1‑139 (MQ=255)
cAGCGGCATAATAAACGTCAAGCCACGTCATTTTATTAAATCAAACGACTCTATCGACTGGGGGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACAGGCa > 4:171949/1‑138 (MQ=255)
aGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTTTCGACGGGGTGTACACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGAATTGAGCCCGTGATTGGTATGCGATTTAACCGGCAGtt > 5:990576/1‑140 (MQ=255)
aGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACtt > 6:151604/1‑140 (MQ=255)
cGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTg > 1:1135331/1‑140 (MQ=255)
taataaaaAACGACCACCCCCGCAATTTTATAAAATCAAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATAATCCGCATTGCGACCGTGATTGGTATGCGATTTAACCGGCACTTTGAt < 5:27045/138‑1 (MQ=255)
gCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATTGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGAt < 6:651071/140‑1 (MQ=255)
gCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATGTAACCGGCACTTTGAt > 2:102865/1‑140 (MQ=255)
gCAAAATAAACGTCCAGCCCCGGCATTTTATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGAt < 8:164027/140‑1 (MQ=255)
caaaacaaaaCGTCCAGCCACGGCATTTTATTAAAACCAACGACTCTATCAACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGAt < 5:739532/133‑1 (MQ=255)
cATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTACCCGGCACTTTGagc > 2:264576/1‑138 (MQ=255)
cATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc > 1:1091601/1‑140 (MQ=255)
aataataACCGTCCAGCCCCGGCATTTTATTAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 8:561611/139‑1 (MQ=255)
aaaaataaCCGTCCAGCCCCGGAATTATATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 8:925470/137‑1 (MQ=255)
aaaaataaACGTCCCCCCCCGGCTTTTTTTTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 8:30588/137‑1 (MQ=255)
taataaACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCATGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAg > 8:678727/1‑140 (MQ=255)
aaataaCCGTCCAGGCCCGGCATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGGATGCGATTTAACCGGCACTTTGATCAg < 2:800805/139‑1 (MQ=255)
aatacACGTCACGCCCCGGAATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt < 5:619303/140‑1 (MQ=255)
aataaACGCCCCCCCCGGGAATTTTATTAAAACCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt < 1:665643/140‑1 (MQ=255)
aataaACGACCAGCCCGGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt < 2:689504/140‑1 (MQ=255)
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CAGCAGCTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGT > NZ_CP022686/2546255‑2546528
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
