Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F12 I0 R1
|
192 |
11691.1 |
8856334 |
98.4% |
8714632 |
135.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,546,394 |
A→C |
10.9% |
V95G (GTT→GGT) |
waaG ← |
glycosyltransferase family 4 protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,546,394 | 0 | A | C | 10.9%
| 278.2
/ 2.9
| 151 | V95G (GTT→GGT) | waaG | glycosyltransferase family 4 protein |
| Reads supporting (aligned to +/- strand): ref base A (84/45); new base C (5/16); total (89/62) |
| Fisher's exact test for biased strand distribution p-value = 5.53e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 153 total aligned reads displayed.
CAGCAGCTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAA > NZ_CP022686/2546255‑2546533
|
cagcagCTGTGTCGGCTTGCCCTGTTCGAAGCTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCTGCATAACAAACATCAGCGGCATAATaaa > 6:467034/1‑140 (MQ=255)
gcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACgg > 4:809517/1‑137 (MQ=255)
gcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTGTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGt > 4:81142/1‑138 (MQ=255)
tgtgTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAg > 6:463203/1‑140 (MQ=255)
tgtgTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAg > 6:666203/1‑140 (MQ=255)
gtgtCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCa > 4:623555/1‑138 (MQ=255)
gtCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGccc < 8:880392/140‑1 (MQ=255)
gggCTTGCCCTGTGCGACGGTTGCAGGCTCACAGGGGGCATAATGGCGATAACTAGACTGCAGGCGATAGAAAAAGCCTTTCTACTGCTCTACTTTCTCTGCATATCAAACCTCAGCGGCAAAATAAACTTCCAGccc < 3:1014300/137‑1 (MQ=255)
gCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGc > 7:683025/1‑140 (MQ=255)
tGCCCTGTTCGACGGTTGCCCGCTCAAAGGCGGCATACTGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑Att < 8:626638/140‑1 (MQ=255)
tGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑Att > 6:172279/1‑140 (MQ=255)
cccTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑Atttt > 7:612808/1‑140 (MQ=255)
gTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTttat < 1:962367/138‑1 (MQ=255)
ttCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTaa > 7:336822/1‑140 (MQ=255)
ttCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTaa > 8:804724/1‑140 (MQ=255)
cGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAACAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAACCGTCCAGCCCCGGC‑AGTTTATTaa > 1:112621/1‑138 (MQ=255)
cGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTaa > 2:628885/1‑138 (MQ=255)
cGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTAGGCATAACAAACATCCGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTaa > 1:676639/1‑138 (MQ=255)
aGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCa > 8:639854/1‑140 (MQ=255)
ggTTGCCCGTTCAACGGCGGAATAATGGCTATAAGGTTACGTCAGGCTTTATAAAACGCATTTCTCCTGCTCTAATTTCTCGGCATAACAAAAATCTGCGGCATAATAAACGTCCAGCCCCGTA‑TTTTTTTTAAATcc < 2:115226/138‑1 (MQ=255)
gTTGCCCGAGCAACGCGGGAATATTGGCTATACGGTGCCTTCCGGCGATTGAAAACGCCTTTCTCCTGCGATACTTTCTCGGCATAAAAACCATCAGCGGCATAATAAACGTCCAGCCCGGGC‑ATTTTATTAAATCCAAc < 6:251163/140‑1 (MQ=255)
tGCCCGCTCAACGGCGGCATAATGGCGATACCGGGACGTCTGGCGATAGAAAACGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCCACGa < 6:523051/140‑1 (MQ=255)
ggCCCGCTCAACGGCGGCATAATGGCTAAAACGGCACGTCAGGCTATATAAAACGCCTTTCTCATGCGCTACTTTCTCGGCATAAAAAACATCTGCGGAATAATAAACGGCCCGCCCCGGA‑ATTTTATTAAATCCAAc < 4:556130/137‑1 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGAc > 5:80766/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGAc > 5:374763/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGAc > 5:842415/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCATGCGCTACGTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACgcc > 5:662620/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATACCGTGACGTCAGGCGATAGAAAACGCCTTTCTCATGCGCTAGTTTCTCGGCATAACAGACATCAGCGGCAGAATAACCGTCCCGCCCCGGC‑AGTTGATTAAATCCAACGAc > 4:207444/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAATAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGAc > 4:590253/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAATGCCTTTCTCATGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGAc > 2:642510/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAATTCCAACGAc > 1:1055069/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGAc > 1:1045040/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGAc > 4:58286/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGAc > 1:945112/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGAc > 2:833981/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCAGAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCACCGAc > 4:1073940/1‑138 (MQ=255)
gCTAAATGGCGGCATAAGGGTTTTAAGGTGCGGTCTGGCTATATAAAAAGCTTTTCTCCTGCGCTACTTTCTCGCCAAAACAAACATCCGCGGCATAATAACCGCCCCGCCCCGGC‑ATTTTATAAAACCCAACGActc < 2:959189/138‑1 (MQ=255)
cTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACACACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTAt > 5:24837/1‑140 (MQ=255)
cAAAGGCGTTAAAATGGCGAAAACGTGACGTCTGGCGATAGAAAAAGCCTTTCTCCTGGGCTACTTTCCCGGAAAACCAAACATCCGCGGAATATTAAACGCCCACCCCCGGC‑ATTTTATTAAATCCCACGACTCTAt < 2:843006/138‑1 (MQ=255)
cAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCg > 6:155212/1‑140 (MQ=255)
gcggaATAATGGCTAAAACGTCACGTCTGGGTTTAAAAAAAGCCTTTCTCCTGCGCTAATTTCTCGTCATAACAAACATCAGCGCAATAATAACCGACCACCCCCGGC‑ATTTTATAAAAACCCACGACTCTATCGACggg < 7:856097/140‑1 (MQ=255)
aTAATGGCTATAACTTGACGTCAGGCTATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGCAATAACAAACATCAGCGGCATAATAAACGCCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGgtg < 4:861601/138‑1 (MQ=255)
tAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATACACGTCCAGCCCCGGC‑ATTTTATTAAATCCACCGACTCTATCGACggggggg > 3:787334/1‑135 (MQ=255)
gATAACTTTACGCCTGGCGATAGAAAAAGCCTTTCTCCTGCGCTAGTTTCTCGGCCAAACAAACACACGCGGCATAATAACCGCCCCGCCCCGGC‑ATTTTATTAAATCCCACGACTCTATCGACGGGGGGTTCACGTa < 4:467818/138‑1 (MQ=255)
aTAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCACCGACTCTAGCGACGGGGTGTTCACGTAAAt > 5:465668/1‑140 (MQ=255)
aTAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGAAGGGGTGTTCACTAAAAt > 6:21679/1‑140 (MQ=255)
aTAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCACGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 8:467627/1‑140 (MQ=255)
aTAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAAAGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 7:440239/1‑140 (MQ=255)
aTAACGTGACGTCAGGCGATAGAAAAAGCCTATCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACACTATCGACGGGGTGTTCACGTAAAt > 5:1024595/1‑140 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTGCTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 1:294959/1‑138 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCTTAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACGCTATCGACGGGGTGTTCACGTAAAt > 2:299185/1‑138 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAACCGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 4:885656/1‑138 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 3:117200/1‑138 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGAGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGTGTGTTAACGTAAAt > 1:782450/1‑138 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCCGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 1:1011898/1‑138 (MQ=255)
tGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCACCGACTCTATCGACGGGGTGTTCACGTAAATGttttt > 8:1052138/1‑140 (MQ=255)
gTCAGGCGATAGAAAAAGCCTTTCTCCTTCGCTACTTTCTCGGAATAACAAACATCAGCGGCTTAATAAACGTCCCGCCCCGGA‑ATTTTATTAAATCCAACGACTCTATCGCCGGGGTGTTCACGTAAATGTTTTTGc > 2:146886/1‑138 (MQ=255)
tCAGGACATAAAAACAGCCTTGCTCCTGCGCTACTTTCTCGGAATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCAcc < 8:340733/140‑1 (MQ=255)
aGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTAGGCATAACAAACATCAGCGGCATAAGAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCa > 6:1059875/1‑140 (MQ=255)
gctaTAGAACAAGCTTTGCTCGTGCGATACTTTCACGTCAAAACACCCACACCCGCCATAATAACCGACCA‑CCCCGGCAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCa < 4:937169/135‑1 (MQ=255)
gATAGAAAAAGCATTTCCCCTGCCCTACTTTCTCGGCAAAACAACCATCCGCGGCATAAAAACCGTCCCGCCCCGGC‑ATTTTATAAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCa < 5:1077341/140‑1 (MQ=255)
aGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCaaaa > 7:625788/1‑140 (MQ=255)
aacccTTTCTCCTGCGCTACTTCCTCGCCAAAACAAACATCAGCGCCATAATAAACGCCCCGCCCCGGC‑ATTTAATAAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAatat < 1:555438/135‑1 (MQ=255)
aaGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTc > 7:35262/1‑140 (MQ=255)
aaGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGCCCACCCCCGGC‑ATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAatat < 4:966605/138‑1 (MQ=255)
aaGCCTTTCTCCTGCGCTAATTTCTCGGCATAACAAACATCAGCGCCATAATAACCGTCCACCCCCGGC‑ATTTAATAAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAatat < 4:306595/138‑1 (MQ=255)
actcCTGCCCTACTTTCTCTGCATAACAAACATAAGCGGCATAATAAACGTCCAGCACCGGC‑ATATTATTAAATCCAAAGACTCTATCGACGGGGAGATCACTTAAATGTTTTTGCACCCAGGCAAAATATTCCGAATTg > 5:656811/2‑140 (MQ=255)
ccgtGCCCTATTTTTTCGGAATAACAAACAACAGCGCTATAATAAACCTCCCCCCCGGGA‑TTTTTATTAACACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg < 1:626575/135‑1 (MQ=255)
cccTGCGCTACTTTCTCGCCATAAAAAACATCCGCGGCATAAAAAACGTCCACCCCCGGC‑ATTTTATTAAACCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg < 3:339421/137‑1 (MQ=255)
gcgcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCg > 6:1032175/1‑140 (MQ=255)
cgcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCgg > 5:1084315/1‑139 (MQ=255)
gcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCg > 4:936748/1‑138 (MQ=255)
tACTTTCTCGGCATAACAAACATCAGCGGCATAATAACCGTCCACCCCCGGC‑ATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg < 4:1008051/138‑1 (MQ=255)
tACATTCTCGTCATAAAAAAAACAAGCGGCATAAAACCCGCCCAGCCCCGGC‑ATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg < 4:117105/138‑1 (MQ=255)
ttCTCGGCAAAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGTC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCTTGATTg > 4:861325/1‑138 (MQ=255)
gcGGCAAAACAACATTCCGCGGCATAAAAAACGTCCAGCCCCGGC‑TTTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATg < 7:717753/139‑1 (MQ=255)
aaTAAAAAACATAAGCGGCATAATAACCGTCCAGCCCCGGC‑ATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGAt < 8:5639/139‑1 (MQ=255)
aaaacaTCCGCTGCATAATTACCGCCCCGCCCGGGG‑ATTTTTTTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTa < 1:484593/137‑1 (MQ=255)
acaaTCAGCGGCATAAAAACCCTCCAGCCCCGCC‑TTTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 1:1055426/135‑1 (MQ=255)
aactTCCGCGGCATAATAAACGTCCCGCCCGGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 3:324135/138‑1 (MQ=255)
aacaTCCGCGGCAAAATCACCGCCCAGCCCCGCC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 4:642599/138‑1 (MQ=255)
aacaTCACCGTCATAATAAACGGCCCGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 3:409586/138‑1 (MQ=255)
aacaGCAGCGGCATAATAAACGACCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 3:906073/138‑1 (MQ=255)
aaaagccgCGGCTTAAAAAACGTCCAGCCCCTTC‑TTTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCTTGATTGGTATGCGATTTAACCg < 7:1026/133‑1 (MQ=255)
aTCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGcc > 5:345463/1‑139 (MQ=255)
cGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCAAACGACTCTATCGCCGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCAAGTGATTGGTATGCGATATAACCGGCACtt > 2:583081/1‑138 (MQ=255)
gCATAATAACCGTCCAGCCCCGGC‑ATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGAt < 8:788622/140‑1 (MQ=255)
gCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTg > 3:164048/1‑138 (MQ=255)
gCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTg > 1:223089/1‑138 (MQ=255)
gCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTg < 1:1097634/138‑1 (MQ=255)
gCATAAAAAACGTCACGCCCCGTA‑ATTTAATAAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTg < 3:842190/138‑1 (MQ=255)
gCAAAAAAAACGTCCACCCCCGGC‑ATTTTTTTAAATCCCACGCATCTATCGACGGGGGTTTCACGTAAATTTTTTTGCACCCAGTCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGAt < 6:533311/140‑1 (MQ=255)
caataaaaAACTTCCCGCCCGGGC‑ATTTTATTAAATCAAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGAt < 8:35262/138‑1 (MQ=255)
caaaataaACGTCCAGCCCCGTA‑TTTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 6:1053453/137‑1 (MQ=255)
caaaataaACGGCCACCCCCGGC‑ATTTTTTTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa < 1:761831/135‑1 (MQ=255)
aataataCACCGCCATCCCCGCC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 5:275687/139‑1 (MQ=255)
aataataAACGCCCACCCCCGGC‑ATTTTATTAAAACCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 6:726790/139‑1 (MQ=255)
aataataAACGACCAGCCCCGGA‑TTTTTATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa < 2:1011898/137‑1 (MQ=255)
aataaACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt < 7:263819/140‑1 (MQ=255)
aCGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCaaa < 5:516405/140‑1 (MQ=255)
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CAGCAGCTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGC‑ATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAA > NZ_CP022686/2546255‑2546533
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
