Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F11 I0 R1
|
249 |
11230.8 |
10274356 |
98.4% |
10109966 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,361,489 |
T→G |
16.8% |
V188G (GTT→GGT) |
nikA → |
nickel ABC transporter substrate‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,361,489 | 0 | T | G | 16.8%
| 261.5
/ 18.6
| 173 | V188G (GTT→GGT) | nikA | nickel ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (58/82); new base G (27/6); total (85/88) |
| Fisher's exact test for biased strand distribution p-value = 3.07e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 173 total aligned reads displayed.
CCTGAAAAGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTGGCGTTTGAAACTG > NZ_CP022686/2361355‑2361626
|
ccTGAAAAGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCGGTCCTTTCCGTTTTATCGCACCATCCAAGTTTAAAAACAACGAAACCATGAACGTCATTAATAAGCCGATTTTAACAGGGCCGTGTGTTTTAc > 8:380702/1‑140 (MQ=255)
cTGAAATTCGCTTAATATCCTTTGCTGCCAGAACTGGCCCTGCCCCGTCTTTTACTTGTTTTCGCACCCTCGCAGATTATAAACCTCTAAACCATGAACGGATTTAAAGCGCCGAGTGGCACCGGGCCGTGGGTTTTACa < 8:693693/140‑1 (MQ=255)
gAAAAGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAgg < 8:71289/140‑1 (MQ=255)
aaaaGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACAggg > 2:709928/1‑139 (MQ=255)
cgcCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAACCCACGAAACCATGAACGGAATTAAAGCGCCGATAGGCACCGGGCCGTGGGGTTTAAAGGAATCGa > 8:387627/1‑140 (MQ=255)
cgcCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTAAAGGAATCGa > 6:588781/1‑140 (MQ=255)
gcCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGaa > 2:691936/1‑140 (MQ=255)
ccTACTATCCTTTCGTGCAATTACTGGCCATGGCCCTTCTTTACCGTTTTATCGCACCCTCGAAGTTTAAAACCCTCCATACCATGTAGGGTATTAAAGGGCCGATTGGCACGGGGCCGTGGGTTTTACAGGAATCGaaa < 5:375522/140‑1 (MQ=255)
ccTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGaaa < 7:699537/140‑1 (MQ=255)
ctactaTCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTTAAGGAATCGaa > 3:1056594/1‑138 (MQ=255)
ctactaTCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGaa < 4:265458/138‑1 (MQ=255)
taTCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTCTCGCACCCTCGCAGTTTAAAAACCACTAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGaa < 6:210396/140‑1 (MQ=255)
agccTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGa < 3:327614/136‑1 (MQ=255)
aTCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGa < 3:340849/138‑1 (MQ=255)
aTCCTTTCCTGAAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACATTGAACGGAATTAAAGCGCCGAGTGGCACCGGGCCGTTGGTTTTACAGGAATCGAAACTGAAt < 7:131258/140‑1 (MQ=255)
aTCCATTCCTGCAATAACGGGCCCTGCCCCGTCCTTTCCGTATTATCGCACCCTCGCAGTTTAAAAACCACTAAACCATGAACGGAATAAAAGCGCCGATTTGCACCGTGCCGTGGGTTTTACAGGAATCGAAACTGAAt < 7:607226/140‑1 (MQ=255)
accTTTCATGCAAGAAATGGCCCGGCCCCGGCATTTCCGTTTTTTCGCACCCTCTCAGTTTAAAAACCACGAAACAATGAACGGAATTAACGCGCCGATTGGCACCGGGCCGTGGGGTTTACAGGAATCGAAACTGAATc < 7:353302/139‑1 (MQ=255)
ttCCTGCACGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCCCACTCGCAGTTAAAAAACCACGAAACCATCACCGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTa < 7:725057/140‑1 (MQ=255)
ttCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAACCCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACAGAATAAGtt > 1:262264/1‑139 (MQ=255)
ttCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATAGCACACTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTTCAGGAATCGAAAAAGAATCAGTa > 1:954889/1‑140 (MQ=255)
ttCCTGCAAGAACTGGCCCAGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTTGCACCGGGCCGTGGGGTTTACAAGAATAGAAACATAATAAGtt > 7:1181249/1‑139 (MQ=255)
tCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAACCCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTaa > 8:792151/1‑139 (MQ=255)
tCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTGTACAGGAATCGAAAATCAATCAGTA‑c > 6:48764/1‑140 (MQ=255)
ccTGCAAGATCTGGCCTTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGAAGTTTAAAAACCCCGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTGTTACAGGAATCGAAACTGAATCAGTA‑Cg < 6:300642/140‑1 (MQ=255)
ccTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAACCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTa < 3:16654/138‑1 (MQ=255)
ccTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTa < 4:529707/138‑1 (MQ=255)
ccTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTa < 3:433380/138‑1 (MQ=255)
ccTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑Cg < 2:172311/140‑1 (MQ=255)
ccTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑Cg < 6:1128577/140‑1 (MQ=255)
ccTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATAGGCACCGGGCCGTGGGGTGTAAAGTAATGGCAACTGAATCactt > 4:628261/1‑135 (MQ=255)
ccTGCAAGAACTGGCCCTGACCCGTCCTTTCCGTTTTCTCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATAAAAGCGCCGATTTGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑Cg < 8:129919/140‑1 (MQ=255)
cTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAGACCACGATACCAAGCACGGAATTAAAGCCCCGATTGCAACCGGGCCGGGTGTTTTTAAATAATCCAAACATAATCACTaa > 4:1243811/1‑137 (MQ=255)
cTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTTCAGGAATCGAAACTGAATCAGTA‑c > 3:522396/1‑138 (MQ=255)
cTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTTCAGGAATAGAACCTGAATCAGTA‑c > 4:178780/1‑138 (MQ=255)
cTGCAAGAACTGGCCCTGCCCCGTACTTTCCGTTTTATCGAAACCTCGCAGTTTAAAAAAAACGAAACCATTAACGGAATTAAAGAGCCGATTGGCACAGGGCAGAGGGTTTTTCAGGAATACTCACTGAATAAGTA‑c > 4:870433/1‑138 (MQ=255)
tGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑Cg < 4:386402/138‑1 (MQ=255)
ggCCCTGCCCCGGCCTTTCCGTTTTATCGCACCCGCGCAGTTTAAAAACCCCGAAACCATGAACGTAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTcc < 6:858296/140‑1 (MQ=255)
gCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCCCCGGGCCGTGGGGTTTAAAGGAATCGAAACTGAATAATTA‑CGCAGTCTTCGTCCGTAAcc > 6:300505/1‑139 (MQ=255)
gCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGACGATTGGCACCGGGCCGTGGGTTTTAAAGGAAACGAAAATGAATCAGTA‑CGATTGCTTCGGGCGTAACg > 8:117760/1‑140 (MQ=255)
gCCCCGTCCTTTACGTTTTATCGCACCCTCGCAGTTTAAAACCCACGAAACCAAGAACGGATTTAAAGCGCCGCTTGGCACCGTGCCGAGGGTTTTACAGATATCGAAACACAATCAGGA‑CGAAGGCGTCGTcccgaccg > 6:331538/1‑134 (MQ=255)
cccGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGTAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGaa < 7:468060/140‑1 (MQ=255)
cccGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCATTA‑CGATGTCTTAGTCCgatacg > 4:1308571/1‑133 (MQ=255)
cccGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACg < 3:1262512/138‑1 (MQ=255)
cccGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACg < 3:1192419/138‑1 (MQ=255)
cccGTCCTTTCCGTTTTATCGAACCCTCGCATTTTAAAAACCACGAAACCATGAAGGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACg < 3:1250738/138‑1 (MQ=255)
cGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTATAACCCACGAATCCATGAACGGAATTATAGCGGCGATTGGCACCGGGCCGTGGGTTTTACTGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGaaaa < 5:1118663/140‑1 (MQ=255)
gTCCTTTCCGTTTTATCGCCCCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATAGAAACTGAAACAGTA‑CGCTGTCTTCGTCCGTAACGaaacc > 8:769111/1‑138 (MQ=255)
gTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCAGGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAAACGAAACTGAATGAGTA‑CGATGTCTTCGTCCGTAACGaaaaa > 7:1107606/1‑139 (MQ=255)
gTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCAGGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGGTTACAGTAATCGAAACTGAAACAGGA‑CGCTGTCTTGGGCCGTAAcccaaaa > 5:422047/1‑134 (MQ=255)
gTCCTTTCCGTTTTATCGCACCCACGCAGTTTAAAAACCACGAAACCAAGAACGGAATAAAAGCGCCGAATGGCACCGGGCCGTGGGTTTTAGATGAAAAGAAAAATAAAAATTA‑CTATGTCTTCGTACCTAACGaaaaa > 5:1166453/1‑139 (MQ=255)
tCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTAAAGGAAACGAAACTGAAACACTA‑CGATGTAATAGTCCGTAACCaaaaaa > 7:390671/1‑138 (MQ=255)
ccTTTCCGTTTTATCGCACCCTCGAAGTTTAAAAACAACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAAGAGAATCACTA‑CGAATTATTCCTCAGTAACCaaaaa > 4:588224/1‑137 (MQ=255)
cTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGTAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAaca > 4:356148/1‑137 (MQ=255)
cTTTCCGTTTTATCGCACCCTCGAAGTTTAAAAACACCGAAACCATGAACGTAATTAAAGAGACGATTGGCACCGGTCCGTGGGTTTTACATGAATCGAAAATGAATCACTA‑CGATGTCTTCGTCCGTAACGAAAact > 4:356149/1‑138 (MQ=255)
cTTTACGTTTTATAGAACCCGCGCAGTTTAAAAACCACGAAAACATGAAAGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGATTCGAAAATAAATCAGTAGCTAT‑TATTATTCCGTAACGaaaaat > 4:724260/1‑136 (MQ=255)
tCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGaaa < 6:493872/98‑1 (MQ=255)
tCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGaaa > 5:493872/1‑98 (MQ=255)
cGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTAAAGGAAACGAAACTGAATCAGTA‑AGATGTCTTAGTCCGTAACGAAAACTACTgg > 3:1123097/1‑138 (MQ=255)
cACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTGTTTCATGAATGGAAAAAGAATCAGTT‑CGATGTGTTGGTACGGTACGAAAAAGACTGGGGCGAAAAGccc > 1:99858/1‑139 (MQ=255)
cTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTTCAGGCATCGAAACTTAATAAGTT‑CGATGTCTTCGTCCGTTAAGAAAACTACTGGGGCGAAAAGCCGGc > 3:820057/1‑138 (MQ=255)
cTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGc > 3:68933/1‑138 (MQ=255)
tCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACAGGAATCGAAACTGAATAAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTTGGGCGAAAAGCCGGCGAt > 8:964045/1‑140 (MQ=255)
gCAGTTAAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTa < 2:815599/140‑1 (MQ=255)
aGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTAAAGGAATCGAAACAGAATCAGTA‑CGATGTAGTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGAttt > 3:566089/1‑137 (MQ=255)
aGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGACGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTaaa < 1:494641/140‑1 (MQ=255)
tAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGCAACTGAATCAGTA‑CGATTTCTTAGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTaaaaa > 3:983307/1‑138 (MQ=255)
tAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGCTTaaaaa > 3:92382/1‑138 (MQ=255)
aaaacCCACTAAACCATGAACGTAATTAACGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 1:1294663/140‑1 (MQ=255)
aaaacCCACGAAACCTTTAAGGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 5:267165/140‑1 (MQ=255)
aaaaaCCACTAAACCATGAACGGAATAAAAGCGCCGATTGGCACCGGGCCGTTGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAg < 3:594103/138‑1 (MQ=255)
aaaaaCCACGAAACCATGACCGGAATTAAAGCGCCGATTGGAACCGGGCAGTGGGTTTTACAGGAATCGAAAATGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGAGAAAAGCCGGCGATTAAAAAGAt < 2:533575/140‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGTAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑AGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 1:813328/140‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGCTGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 2:83863/140‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATTTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 2:1176920/140‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 7:1052323/140‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 8:465454/140‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 1:691936/140‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 5:1002099/140‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 5:792121/140‑1 (MQ=255)
aCGAAACCATGAACGGAATTAAAGCGCCGATTGGCTCCGGGCCGTGGGGTTTACAGGAATAGAAACTGAATCAGTA‑AGATGTCTTAGTACGTAACGAAAACTACTTGGGGGAAAAGCCGGCGATTAAAAAGATCACCgtt > 6:38930/1‑140 (MQ=255)
aCGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTTCAGGAATAGAAAAATAATCAGTA‑AGATGTATTAGGCCGTAACGAAAAAAACTTGGGCGCAAATCCGGCCCTTAAAAACATCACCttt > 5:3279/1‑140 (MQ=255)
aCGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCTAAACTGAATCAGTA‑CGATGTCTTAGTCCGGTACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCttt > 2:574107/1‑140 (MQ=255)
aCGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTAAAGGAATCGAAACTGAATCAGTA‑CGATTTGTTAGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAAAACCttt > 1:1287507/1‑140 (MQ=255)
gAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTAAAAGAATCGAAACTGAATCAGTA‑CGATGGGTTCGTCCGTTACGAAAACTAATGGGGCGCAAATCCGGCGCTTTAAAAGATCACCatt > 3:502232/1‑138 (MQ=255)
aaCCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACg < 7:28947/140‑1 (MQ=255)
aaCAATGAACTGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACg < 5:908039/140‑1 (MQ=255)
aCCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGt < 7:877000/140‑1 (MQ=255)
tGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACAGGAATCGAAAATGAATCACTA‑CGATGTCTTCGGCCGTAACGATAACTACTGGGGCGCAAAGCCGGCGATTAAAAAGATAACCGTTAACGTGATc > 1:388045/1‑140 (MQ=255)
tGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACAGGAATAGAAACAGAATCAGTT‑CGATGTCTTCGTCCCTTACCGAAACTACTGGGGCGAAAAGCCCGCGGTTAAAAATATAACCATTaaacttatc > 7:655445/1‑133 (MQ=255)
agAACGTAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTGCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATc < 7:203081/139‑1 (MQ=255)
aCGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATcc < 3:1026639/138‑1 (MQ=255)
aaTTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACACGTAACGAAACTGAAACCGTA‑CGATGTCTTAGGACGTAAAGAAAACTACAGGGGCGAAAAACCGGCGATTAAAAAGATAACCTTTAACGTGAAccctgccc > 5:1076945/1‑135 (MQ=255)
ccGATTGGCACCGGGCCGTGGGTTTTTCAGGAATAGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAAAGAAAACTACTGGGGCGTAAAGCCCGCGATTTAAAAGAAGACCTTTAAAGTGATCCCGGACCCGAcaaaccc > 7:832710/1‑134 (MQ=255)
ccGATTGGCACCGGGCCGTGGGTGTTAAAAGAATAGAAACTGGATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTAATGGGGCGAAAAGCCGGCGATTAAAAATATCACCGTTAACGTGATCCCGGACCCGACTACCcg > 6:708703/1‑140 (MQ=255)
gCACCGGGCCGTTGGGTTTTCAGGAATCGAAACTGAAGCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTg < 2:271960/140‑1 (MQ=255)
ggCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCAGTAACGAAAACTAAAGGGGCGTAAAGCCGGCGAATAAAAACATAACCTTTTACGTGCTCCCGGGCCCGACTACCCCCGCGGTGGCGgtt > 6:858345/1‑140 (MQ=255)
ggCCGTGGGTTTTACAAGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGCTGCCGGACCCGACTAACCCCGCGGTGGGGtgt > 6:1125606/1‑138 (MQ=255)
ggCCGTGGGGTTTACAGGAATCGAAAATTAATAAGTA‑AGAAGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCCACTACCCGCGCGGTGGCGttt > 7:1124005/1‑140 (MQ=255)
gTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTGGCGTTTGaaa < 7:869143/140‑1 (MQ=255)
ggTTTTACAGGTATCGAAACTTATTCAGTA‑CGATGTCTTCTTACGTAAAGAAAACTACTGTGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTTACGTGATCCCGGACCCGACTACCCGCGCGGTGGCTTTTGAAACTg < 6:878872/140‑1 (MQ=255)
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CCTGAAAAGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTA‑CGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTGGCGTTTGAAACTG > NZ_CP022686/2361355‑2361626
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
