Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F36 I0 R1
|
179 |
9550.8 |
8038540 |
98.3% |
7901884 |
136.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,361,489 |
T→G |
13.7% |
V188G (GTT→GGT) |
nikA → |
nickel ABC transporter substrate‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,361,489 | 0 | T | G | 13.7%
| 240.8
/ 9.3
| 145 | V188G (GTT→GGT) | nikA | nickel ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (56/64); new base G (21/2); total (78/67) |
| Fisher's exact test for biased strand distribution p-value = 5.62e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 145 total aligned reads displayed.
CCTGAAAAGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTGGCGTTTGAAACTGG > NZ_CP022686/2361355‑2361627
|
ccTGAAAAGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTaa > 3:16959/1‑139 (MQ=255)
cttaaaaGCGCCTACTATCCATTACTGCAACAACTGGCCCTGCCCCGTCCTTTACTTTTTATCGCACCATCGCAGTTTAAAAACCACGAAACCATGAACTGAATAAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACa < 5:5455/137‑1 (MQ=255)
cgcaaaaGCCCCAACAATCCTTTCCTGAAACAACTGCCCCTGCCCGGGCCTTTCCGTTTTATCGCACCCTCGAAGTTTAAACACCACGAAACCATGAACTGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACa < 1:941880/137‑1 (MQ=255)
tGAACATCGCCTACTATACTTTCCTGCAAGAACTGTCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAg < 2:588532/140‑1 (MQ=255)
aGCGCCTACTATCCTTTCCTGCAATAACTGGCCCTGCCCCGTCCTTTCCTTTTTATCGCACCCTCGCATTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATc < 3:510885/140‑1 (MQ=255)
gcgcCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCTCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCg > 1:848010/1‑140 (MQ=255)
cgcCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGa > 3:261463/1‑140 (MQ=255)
cgcCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTACGTGTAATCGCACCCTCGCACTTAAAAAACCACGAAACCATGAACGGAATTAACGCGCCGATTGGCACCGTCCCGTGGGTTTTTCAGTCATCgc > 3:391431/1‑139 (MQ=255)
cgcCTACTATCCTTTCCTGCAAGAACTGCCACAGCCCCGTCCTTTCCGTTTTATCGCACCCTAGCAGTTTAAAAACAATGACACCATGAACGGAAATAAAACGACGAATGGCCCCTGGACGTGGGGTTTACAGCAAtagc > 7:430797/1‑137 (MQ=255)
gcCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGaa > 8:540414/1‑140 (MQ=255)
gcCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTACGTTTTATAGCACCCTCGCATTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGCTTGGCACCGGGCCGTGGGTTTTACAGGAATCCaa > 8:789177/1‑140 (MQ=255)
ccTACTATCCTTTCCTGCAAGAACTGGGCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACAATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACAGGAATCGaaa < 2:1031943/140‑1 (MQ=255)
ccTACTAGCCTTTCCTGCACGAACTGGCCCTGCCCCGTACTTTCCGTTTTATCGCACCCTCGCAGTTAAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGaaa < 7:524679/140‑1 (MQ=255)
ccTACAAACATTTCCTGAAAGAACTGGCACTGCCCCGTCCTTTCCGTTTTATCTCACCCTCGAAGCTTAAAAACCACGAAACCATCAACTGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGaaa < 3:859240/140‑1 (MQ=255)
actaTCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCTCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTAAAGGAATCGaaaatt > 7:85294/1‑137 (MQ=255)
actaTCCTTTCCTGCAAGAACTGGCCCTCCCCCGTCCTTTCCGTTTTATAGCACCCAAGCAGTTTAAAAACCACGAAACCATGAACGGAAATAAAGCGCCGATTGGCACCGGGCCGTGGTTTTTACATGAATCGaaaaag > 4:277260/1‑137 (MQ=255)
ctaTACTTACCTGCCAGCAAGGGCCCTGCCCCGGCCTTTCCGGTTTAACGCACCCTCGCAGTTTAAAAACCACGAAACCCTTAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAAGCGACACTGa < 4:904889/140‑1 (MQ=255)
aTCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAAt < 4:150454/140‑1 (MQ=255)
tCCATTCCTGCAAGAACTGGCCCTGACCCGTAATTTCCGTTTTATCTCACTCTGTTAGTTTAAAAACGACGACACCATGTTCGGAATTAATGGGCCGTTTGGCACCTGGCCGTGGTTTTTAGAGGAATCGATACTGatgc < 4:15566/140‑4 (MQ=255)
ccTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTTAAtaa > 2:411791/1‑138 (MQ=255)
ttCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAATCGCCGATTGGCACCGGGCCGTGGGTTTTTCAGGAATCGAAACTGAAACattt > 4:680864/1‑137 (MQ=255)
ttCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTa < 3:218639/140‑1 (MQ=255)
ttCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTAAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTa < 2:573433/140‑1 (MQ=255)
ttCCTGCAAGAACTGGCCCTGCCCCGTACTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGGGGGTTTTAAATGAAACGAAAAGGAATGAGTa > 6:151235/1‑140 (MQ=255)
tccataaaGAACTGGCCCTGCAACTTAATATCCGTTTTATCGCACACTCGCAGTTTAAAAACCACGAAACAATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTAc > 8:387095/7‑140 (MQ=255)
tCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCCCCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGCTTGGCACCGGGCCGTGGGTGTTACAGGATTCGAAACTTTATCAGTaa > 7:293960/1‑139 (MQ=255)
tCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTaa > 7:166721/1‑139 (MQ=255)
tCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACCAAACCATGAACGGAATTAAATCGCCTATTGGCACCGGGCCGTGGGGTTTACAGGAATCGAAACTGAATCAGTAc > 6:399878/1‑140 (MQ=255)
tCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACACTCGCAGTTTAAAAACCACGAAACCATGACCGGAAATAAAGCGCCGATTGGCACCGGGCCGAGGGTTTTACAGCAAACTAAAATGAATCAGTaa > 8:14148/1‑139 (MQ=255)
acTGAAAGAACTTGCCATGACCCGTCCTTTCAGTTATATCGCACACTCGCATTATAAAAACCACGAAACCATGAACGTAATTAAAGCGCCGAATGGAACCGGGCCGTGGGTGTTACAGGAATCGAAACTGAATCAGTACg < 4:74866/139‑1 (MQ=255)
tGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGAt > 6:885906/1‑140 (MQ=255)
aaGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTGTAAAAACCACGAAACCATGAACGGTATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTTGAGGAATGGAAACTGAATCAGTTCGATGtg > 4:195450/1‑139 (MQ=255)
aCTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAATCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATAGAAACTTAATCATTACGAAGTCttag > 6:36619/1‑138 (MQ=255)
aCTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACAACGCAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTGTAAAGGTATCGAAAGAGAATAAGTACGAGGTGTTCg > 1:256984/1‑140 (MQ=255)
aCTGGCCCTGCCACGTCCTTTCCGTATTATCGCACACTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATAGGCACCGGGCCGTGGGTTTTACAGGATACGAAACTGAATAAGATCGACTTCTTCg > 8:823365/1‑140 (MQ=255)
ggCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑cc < 2:644912/140‑1 (MQ=255)
gCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGG‑CCg > 3:843954/1‑140 (MQ=255)
cccTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTTAAGGAATCGAAACTGAATCAGTACGATGttttattcagg > 7:210987/1‑133 (MQ=255)
gCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCATTACCAAGTCTTCGT‑ACGGAACg > 6:267995/1‑140 (MQ=255)
gCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTTCAGGAATCGAAAAAGAATCAGTACGATGTATTCGT‑CCGTaaag > 6:636646/1‑138 (MQ=255)
gCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACAGGAATCGAAACTGAATCAGTTCGATGTGTTCGT‑CCGGAACg > 2:1037102/1‑140 (MQ=255)
ccccGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTTAAGGAATCGAAACTGAATCAGTAAGATGTATTCTT‑CCGTAActa > 6:569990/1‑138 (MQ=255)
ccccGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑ACGTAActa > 4:596021/1‑138 (MQ=255)
cccGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGaa < 6:248851/140‑1 (MQ=255)
cccGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGaa < 1:159739/140‑1 (MQ=255)
tCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGCTTGGCACCGGGCCGTGGGTTTTACAGGAATCGCAACTGAATCAGTACGATGTCTTCGT‑CCGTAAAGAAAact > 4:97855/1‑140 (MQ=255)
tCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTTAAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑ACGTAACGAAAaca > 6:533588/1‑139 (MQ=255)
tCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTTAAGGAATCGAAACTAAATAAGTTCGATTTCATAGT‑CCGTAACGAAAaca > 1:96221/1‑139 (MQ=255)
tCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAaca > 4:90193/1‑139 (MQ=255)
tCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCAAGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACACGAATCCAAACTGAATCAGTACGCTGTCTTCGT‑CCGTAAAGCAAact > 1:865318/1‑140 (MQ=255)
tCCTTTCCGTTTTATCGCAACCTCGCAGTTTAAAAACCACGAAACCATCAACGGAATTAAAGCGCCGATTGGCACCGCGCCGTGTGTTATAAAAGAATCCAAACTGCATCAGTACGATGTCATCGT‑CCGTAACGAAAacg > 6:906065/1‑139 (MQ=255)
ccTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAacta < 6:980944/140‑1 (MQ=255)
cTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGGTTACACGAAGCGAAACTGAATCAGTACGTAGTATTCGG‑ACGTAAAGAAAactaa > 3:211597/1‑139 (MQ=255)
tCCGTTTTATCGCACCCTCGCAGTTTAAACACCACGAAACCATGAACGGAATTAAAGCGCCGCGTGGCACCGGGCCGTGGGGTTTACAGGACTCGAAACAGAATCACTTCGCTGTCTTCGT‑CCGGATCGAAAactactag > 3:442949/1‑138 (MQ=255)
tCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACATGAATAGAAACTGAATAAGTACGATGTCTTAGG‑ACGTAACCAAAACTAATgt > 5:735915/1‑139 (MQ=255)
tCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGGTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAaataaagg > 5:237942/1‑136 (MQ=255)
cGTTTTATCGCACCCTCTCATTTTAAAAACCACTAAACCATGAAGGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGG‑CCGTAACGAAAACTACTgggg < 5:154613/140‑1 (MQ=255)
gTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAAGCAACGAAACATAATAAGTAAGATGTCTTAGTGCCGT‑ACGAAAACAAAAGGGGc > 1:954029/1‑140 (MQ=255)
tttATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATAGCAACTGAAACATTACGATTTAATCGT‑CCGTAACGAAAACTACTggggagt > 2:291914/1‑137 (MQ=255)
cACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCg > 2:202248/1‑140 (MQ=255)
cccgccGCAGTTTAAACACCACGAAACCATGACCGGAATTACAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTCACGAAAACTACTGGGGCGAAAAGCCgg < 1:622563/135‑1 (MQ=255)
tCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGTCCGTGGGTTTTACAGGCATAGCAACTGCATCCATACGATTTCTTCGT‑CAGTAAACAAAACTACAGGGGCGAAAAGCCTGCGAt > 1:461956/1‑140 (MQ=255)
tCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGAt > 2:206433/1‑140 (MQ=255)
gccttttAAAACCCCCGAAACAATGACCGGAATTAAAGCGCCGAGTGGCACCGGGCCGTGGGGTTTACAGGAATCGAAACGGAATCAGTACGATGGCTGCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTa < 1:152533/136‑1 (MQ=255)
tgTTTAAAACCCACGAAACCATGCACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTaaa < 5:972228/139‑1 (MQ=255)
tAAAAACCACGAAACCATGAACGGAATTAACGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGa < 4:729399/140‑1 (MQ=255)
tAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTTCAGGAATCGAAACTGAATAACTACCATGTCTTCGT‑ACGTAACCAAAACTTCAGGGGCGAAAAGCCGGCGATTAAAAAGa > 4:837988/1‑140 (MQ=255)
tAAAAACCACGAAACCATCAACGGAATTAACGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGa < 6:78790/140‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGGAATTCAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 3:406672/140‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGTGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 2:379819/140‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 1:378601/140‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 2:367475/140‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 5:533588/140‑1 (MQ=255)
aCGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCttt < 7:641350/140‑1 (MQ=255)
aCGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAAACGAAAATGAATCAGTACCATTTATTCGT‑CCGGTACGAAAAATACTGGGGGGAAAATCCCGCGATTAAAAACATCACCttt > 3:311001/1‑140 (MQ=255)
aCGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTAAAGGAATCGAAACTGAATCAGTAAGATGTCTTAGT‑CCGGAACGAAAAAAACTGGGGCGAAAACCCGGCGATTAAAAAGAACACCatt > 7:932308/1‑140 (MQ=255)
aCCATGAACGGAATTAACGAGCCGATTGGCACCGGGCAGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGt < 6:875122/140‑1 (MQ=255)
aCCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGt < 3:381646/140‑1 (MQ=255)
tGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTAAAGGAATCGCAACTGAATCATTACGATGTCTTCGT‑CCGTAACGAAAAATACTGGGGCGAAAATCCGGCGATTAAAAAGATCACCGTTAACGTGATc > 8:232202/1‑140 (MQ=255)
tGAACGGAAGTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACCGGAATAGAACCTGAATCAGTACGATGTCATCGT‑CCGTAACGAAAACTACTGGGGCGCAAAGACGGCGATTAAAAAGAACACCATTAACGGGAta > 6:574414/1‑139 (MQ=255)
cgtaaTTAAACCGCCGATTGGCACCGGGCCGTTGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCgg < 3:542868/137‑1 (MQ=255)
cGGAATTAAAGCGCCGATTGGCACCGGGACGTGGGATTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCgg < 7:761086/140‑1 (MQ=255)
aTTAAAGCGCCGATTGGCACGTGGACGTGGGTTTTACAGGAATCGAAACTGAATCATTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCTCCTTTAACGTGATCCCGGAccc < 3:1019045/140‑1 (MQ=255)
ccGATTGGCACCGGGCCGTGGGTTTTTCAGGAATGGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAATACGGCGAGTAAAAATATAACCTTTAACGTGATCCCGGCCCCGACTAcacc > 8:398252/1‑137 (MQ=255)
ccGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCcg > 4:114520/1‑140 (MQ=255)
ccGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACAACAGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATACCGGCCCCGACAAcccc > 2:882150/1‑139 (MQ=255)
ccGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTAGT‑GCGGAACGAAAACGACTGGGGCGGAAAGCCGGCGCTTTAAAAGATAACCTTTAACGTGATCCCGGCCCCGCCTAcccc > 7:379008/1‑139 (MQ=255)
ccGATTGGCACCGGGCCGTGGGTTTTACAGGAATAGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTAAAGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGGGATCCCGGACCCGACTAcccc > 6:954633/1‑139 (MQ=255)
ccGATTGGCACCGGGCCGTGGGGTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTAcccc > 1:631867/1‑139 (MQ=255)
ccGATTGGCACCGGGCCGTGGGGTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGG‑CCGTAACGAAAACTACAGGGGCGGAAAGCCGGCGATTAAAAAGAAAACCGTTAACGTGCTCCCGGACCCGCCTAcccc > 7:821916/1‑139 (MQ=255)
ccGATTGGCACCGGGCCGTGGGGTTTACAGGAATCGAAACTGAATCACTACGGTGTCTTCGT‑CCGGAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATACCCGTTAACGGGGTACCGGACCCGACTAcccc > 4:22796/1‑139 (MQ=255)
gCAGCGGGCCGGGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGGCTTCGT‑CCGTCACGTAAACTACTGGGGCGAAATGCGGGCGATTAAAACTATCACCTTTTACGTGATCCCGGACCCGACTACCCGCGCgggg < 7:916544/140‑3 (MQ=255)
gCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGCATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTg < 4:298692/140‑1 (MQ=255)
gCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTg < 6:714472/140‑1 (MQ=255)
gCACCGGGCCGTGGGTTTTACAGGAATAGAAACTGAATCAGTACGATGTCTTAGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTg > 4:995498/1‑140 (MQ=255)
ggCCGTGGGTTTTACAGGAATAGAAACTTAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACATGGGCGGAAAGCCGGCGATTAAAAATATACCCATTATCGTGCTACCGGACCCGACGACCCGCGCGGGGGCGttt > 8:581503/1‑140 (MQ=255)
ggCCGTGGGTTTTACAGGAATAGAAAATGAATAAGTACGATGTCTTCGT‑CCGTAAAGAAAACAACTGGGGCGCAAAGCCCGGGATTAAAAATATCACCTTTTAAGTGATCCCGGACCCGCCTAAACGCGCGGTGGCGatt > 4:865385/1‑140 (MQ=255)
gTGGGTTTTACAGGAATCGAAACTGAATCAGTACGTTGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGGCGGCGATTAATAAGATCACGTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTGGCGGTTGaaa < 2:880918/140‑1 (MQ=255)
gTTTTACAGGAATCGAACCTGAATCAGTACGATGTCTGCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGCTCCCGGACCCGACTACCCGCGCGGTGGCGTTTGAAACTgg < 4:519305/140‑1 (MQ=255)
gTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CAGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGGGGCGTTTGAAACTgg < 3:312357/140‑1 (MQ=255)
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CCTGAAAAGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGT‑CCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTGGCGTTTGAAACTGG > NZ_CP022686/2361355‑2361627
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
