Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F36 I0 R1
|
275 |
10897.2 |
10515506 |
98.4% |
10347257 |
135.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,572,721 |
A→C |
8.1% |
F186C (TTT→TGT) |
CIW80_RS12885 ← |
ROK family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,572,721 | 0 | A | C | 8.1%
| 542.5
/ 4.4
| 271 | F186C (TTT→TGT) | CIW80_RS12885 | ROK family protein |
| Reads supporting (aligned to +/- strand): ref base A (131/108); new base C (3/28); total (135/136) |
| Fisher's exact test for biased strand distribution p-value = 1.34e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 274 total aligned reads displayed.
AGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGATGGC > NZ_CP022686/2572586‑2572860
|
aGCTGTTGCCTAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCAGGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTGCACTAAAACCGCTGCCGGAAACAAACGa < 8:546868/140‑1 (MQ=255)
cTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGa > 2:226064/1‑138 (MQ=255)
cTGTTGGCGAAAACGTGCCACCAGCTGCATCGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCTAGTTAGCAGTCAGCTGTTGATAGCGTTCACTAAAACCGCTGACGGAAACAAACCACt > 7:812343/1‑140 (MQ=255)
ttctcGAAACTGTGCAACCGGCTGAATGGCACAAGCATCACCACGCTGGGCCAGGGGCAAAAGCCCCTCTGAAGTGAGCAATTTACCTTCAATATGTTGATAGCGTTCAATAAAACCTCTGCCGTAAAAAAACGACTc < 2:97422/134‑1 (MQ=255)
aaaaCGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGATACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGt > 7:41643/1‑140 (MQ=255)
aaaCGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGtt > 6:587906/1‑140 (MQ=255)
aaaCGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGtt > 8:492233/1‑140 (MQ=255)
cGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTtg > 1:1282696/1‑138 (MQ=255)
gCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGttt > 5:402961/1‑140 (MQ=255)
acatgctgcTTGGCACAAGCATCACACCGTTGTGCCTGGGTGACAATCGCGGATGATGTTAGCATTTAACCCGTCATCTGTTTAAAGCGTCCACTAATCCCGCTGCCGCAAAATAACGACTCCACGCAGTTGTGTTTGcc < 8:41458/137‑1 (MQ=255)
ctgctgCATGGCACAAGCATCACCACGTTGTGCCAGGGTTACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCAATAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGcc < 1:611952/138‑1 (MQ=255)
ctgcATGGCACAAGCAACACCACTTTGAGCGATGGGTAAAATCGCCGCATAAGGCTGAATGTTACCTGTCATCTTTTGATAGCGTGCACTAAAACCGCTGCCGTAACAACACGACTCCACGCAGTTGTGTTTGCCGCa < 4:1264801/138‑1 (MQ=255)
tcaaTGGCACAAGCATCAACACGTAGTGCCAGGGAGACAATCGCCTCAGAAGTGAGCAAGTTACCAGTCCTCTGTTGATAGCGTACACTAAAACCGCTGCCGGAAACATCCGACTCCACGCAGATGTCTTTGCCGCaa > 4:521154/4‑138 (MQ=255)
ggCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGATACAAACGACTCCACGAAGTTGTGTTTGCCGCAATAGCAac > 5:173251/1‑140 (MQ=255)
ggCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAac > 5:1180868/1‑140 (MQ=255)
gCAAAAGCATCACCAGGTTGTGCCAGGGTTACAATCGCCGCAGAAGTGAGCAATTTACCTGTCATCTGTTTATAGCGTTCACTAAAACCGCGGCCGGAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAact < 6:370835/140‑1 (MQ=255)
caAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 1:940755/1‑138 (MQ=255)
caAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAactg > 2:76518/1‑138 (MQ=255)
caAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAAAAGCAactg > 4:681656/1‑138 (MQ=255)
caAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGGGTTTGCCGCAATAGCAactg > 4:989310/1‑138 (MQ=255)
aacacaacGTTGTGCCTGGGTTACAATCGCCGCAGATGTGAGCAAGTTACCAGTCAGCTGTTGATAGCGTTCCCTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAActgactga < 4:819448/136‑1 (MQ=255)
aTCACCACGTTGTGCCTGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATg < 7:620785/140‑1 (MQ=255)
aTCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAActgactga > 3:623581/1‑138 (MQ=255)
aTCACCACGTTGGGCCCGGGTTAAAATCGCCGCATATGTGCCCATGTAACCAGTCATCTTTTGAGAGCGGTCAATAAAACCGCGGCCTGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATg < 8:893285/140‑1 (MQ=255)
ccccacGTTGGGCCAGGGTGACAAGCCCCGCAGAAGTGAGCAAGTTACCAGGCATCTGTTGATAGCGGGCACTAACACCGCGGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGa < 8:757792/138‑1 (MQ=255)
accagtttGTGCCTGGGTGAAAAGCGCCGCAGAAGTGAGCAAGTTACCTGACATCTTTTTATAGCGTTCAATAAAACCGCTGCCGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATgg < 3:494607/132‑1 (MQ=255)
accacTTTGTGCCTGGGTGAAAATCGCCGCATAAGTTTGAAAGTTACCATTCATCTGTTTATAGCGTACAAAAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 6:1235978/140‑1 (MQ=255)
ccgtttGTGCCTGGGTGACAATCGCCGCATATTGTCGCATTTTACCTGTCATTTGTTGATTGCTTTCATTAAAACCGCTGCGGTAAAAAAACGACTCCACGCAGTTGTGTTTGCCGAAATAGCAACTGACTGATGGACCa < 8:1213420/136‑1 (MQ=255)
cccGTTGTCCCAGGGGGACACGCGCCGCATATGTGAGCAAGTTACCTGCAATCTGTTTATAGCGTTCAATAAACCCGGTGCCGCAAAAACACGACTCCCCGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc < 1:833761/136‑1 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGCCTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 1:999572/1‑138 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 1:397266/1‑138 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 3:1101025/1‑138 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCCCTGCCGGAAACAAACGACTCCACGCAGTTGAGTTTGCCGCAATAGCCActgactgaagcac > 2:1245259/1‑133 (MQ=255)
cacGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTACACTAAAACCGCGGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGAc > 2:55062/1‑138 (MQ=255)
gCCTGGGTGACAATCGCCGCATATGTGAGCATGTTACCAGTCATCTGTTGATAGCGTTCAATAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 6:1099718/140‑1 (MQ=255)
cccAGGGTGACATTCGCGGCATATGTGAGCATGTAACCTGTCATCTGTTGATTGCGTTCACTAAAACCGCTGCCTGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTcc < 3:1183769/137‑1 (MQ=255)
ccAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCt > 3:246760/1‑138 (MQ=255)
ccAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCt > 3:686932/1‑138 (MQ=255)
cAGGGTTACAATCCCCGCAGAAGTGACCAAGTTACCAGTCATCTGTTTATAGCGGACAATAAACCCGCTCCCGTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 7:355730/140‑1 (MQ=255)
cAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 4:632926/138‑1 (MQ=255)
cAGGGTCACAAGCGCCGCACACGGGAGCATGTTCCCAGCCACGGGTTCATAGCGTTCACTAAAACCGCGCCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 2:1212922/138‑1 (MQ=255)
cAGGGGTACAATCGCCGCAGACGTGAGCAAGTTCCCAGTCATCTGTTGATAGCGTTCACTAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 4:175337/138‑1 (MQ=255)
cAGGGGGAAAATCCCCGCAGAAGAGACCAAGTTACCATTCATTTGTTTATATGCTACAATAAACCCGCTGCCTCAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCt < 5:704637/140‑1 (MQ=255)
aaGGGTTAAAATCGCCGCAGAATTGACAAATTTCCCAGTCATCTTTTTATAGCTTTCAATAAAACCGCTGCGGTAAACAAACGACTCCACTCAGTTTTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg < 2:938719/137‑1 (MQ=255)
aGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAACCGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGc > 3:33650/1‑138 (MQ=255)
ggTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCACATGCCTGTTGGACCATCGTCCTGCTCCg > 7:724928/1‑140 (MQ=255)
tGACAATGGCCGATTAAGTTTCCAAGTTCCCTTTCATCTGTTGATTGCTTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCg < 2:1076900/138‑1 (MQ=255)
aagcgccgcAGAAGTGAGCACGTAACCAGTCATCTGTTGATAGCGTTCACAAAAACCGCTCCCTTAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGc < 7:274753/137‑1 (MQ=255)
aaTCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCATGCTCCGtata > 3:1059167/1‑138 (MQ=255)
cgccgcAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTg > 8:826398/1‑140 (MQ=255)
gccgcAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTgg > 6:643444/1‑140 (MQ=255)
gccgcAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTgg > 6:1187640/1‑140 (MQ=255)
ccgcAGACTTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTg < 1:361377/138‑1 (MQ=255)
ccgcAGAAGTGACCAAGTTACCTGTATGTTTTTTTTAGCTCTCACTAAACCCGCGGCCGCAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTg < 1:111949/138‑1 (MQ=255)
cgcAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGCTGGACCATCTTCCTGCTCCGTATAGCCTgg > 4:705622/1‑138 (MQ=255)
gAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAATCAAACGACTCCACGCAGTTGGGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAAc > 4:308875/1‑138 (MQ=255)
gAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa > 1:184868/1‑111 (MQ=255)
tGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCAATAAACCCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGata < 7:1243065/140‑1 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGatatt > 6:204651/1‑139 (MQ=255)
aGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 6:1048221/1‑140 (MQ=255)
cAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 1:431878/1‑138 (MQ=255)
cAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 2:520036/1‑138 (MQ=255)
cAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 2:917115/1‑138 (MQ=255)
cAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATg > 3:709550/1‑138 (MQ=255)
gTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCACCTGACTGATGGACCATCTTCATGCTCCGTATAGCCTGGCAACGTGATATGACCGc > 5:695302/1‑140 (MQ=255)
tACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGc < 2:1255114/122‑1 (MQ=255)
tACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACAGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGc > 3:1224832/1‑138 (MQ=255)
aCCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGGTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCACCGTGATATGACCGCAtt > 7:497293/1‑140 (MQ=255)
cAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCg > 6:1129980/1‑140 (MQ=255)
cAGTCATATGTTGATAGCGGTCACTAAAACCGCTGCCGGAAACAATCCACTCAACCCACTTGTGTTTGCCGAAATAGACACTGACTGATGGACCATCCTCCAGATCCGTATAGCCTGGCACCGATATATGACCGCATTCg > 5:465664/1‑140 (MQ=255)
aGTCATATGTTGATAGCGTTCACTAAAACCGCTGCCGTAAAAAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCgg < 7:1103383/140‑1 (MQ=255)
gTCATCTGTTGATAGCGTTCACAAAACCCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc < 8:705681/140‑1 (MQ=255)
cATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCCCGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACAATCTTCCTGCTCCGTATAGCCTGGCAACGTGCTATGACCGCATTCggg > 1:1227882/1‑137 (MQ=255)
aaTCTGTTGATCGCGAGCAAAAAACCCGCTGCCGTAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgc < 3:1321898/137‑1 (MQ=255)
aTCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAAC‑AACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCGCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagca > 7:797438/1‑140 (MQ=255)
cTGTTGATAGCGTTCACTACAACCGCTGCCGGAACAAAACGACTCCACGCAGTTGTGTTTGCAGAAATAGCAACTGACTGATTGACCATCTTCCTGCTCCTTATAGACTGGCAACGTGATATGACCGCCGTCGgcagc < 2:321629/138‑1 (MQ=255)
cTGTTGATAGCGTTCACTAAACCCGCTGCCGGAAACCAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc < 4:1042788/138‑1 (MQ=255)
cTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTg > 4:979621/1‑61 (MQ=255)
cTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTg < 3:979621/61‑1 (MQ=255)
cTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc > 1:32304/1‑138 (MQ=255)
cTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc < 2:616986/138‑1 (MQ=255)
cTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGgcagc < 2:397266/138‑1 (MQ=255)
gctttCACTAAAACCCCTGCCGGAACAAAACGACTCCACGCAGTTGTGTTTGCCGCAAAAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCa < 1:1272590/135‑1 (MQ=255)
gcgggcACTAAAACCGCTGCGGCAAACACACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCa < 1:251052/133‑1 (MQ=255)
gCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCa < 1:1039482/138‑1 (MQ=255)
gCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCa < 2:440832/138‑1 (MQ=255)
gCGGTCACTAAAACCGCTGCCGGAACCCAACGACTCCACGCAGTTGGGGTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAgg < 8:1005920/140‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAg < 4:887839/138‑1 (MQ=255)
cGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGc > 6:414653/1‑140 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa > 6:855709/1‑75 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCa < 5:855709/75‑1 (MQ=255)
tCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCCGCATTTCCCCAGGcccc > 6:54163/1‑140 (MQ=255)
aCTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGcccc > 2:1333324/1‑138 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGCCCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCg > 7:1001731/1‑140 (MQ=255)
cTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGATCCGTATAGCCTGGCAACGTGAAAAGACCGCAGTAGGCAGCATTTCCCAAGGCCCCTATAAACGGTCg > 5:1073332/1‑140 (MQ=255)
gCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTg > 3:860621/1‑69 (MQ=255)
gCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTccc < 1:934012/118‑1 (MQ=255)
gCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCg > 1:627004/1‑138 (MQ=255)
aaacaaacGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCt < 4:1101025/138‑1 (MQ=255)
aacGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGATGGc < 8:279938/140‑1 (MQ=255)
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AGCTGTTGGCGAAAACGTGCCACCTGCTGCATGGCACAAGCATCACCACGTTGTGCCAGGGTGACAATCGCCGCAGAAGTGAGCAAGTTACCAGTCATCTGTTGATAGCGTTCACTAAAACCGCTGCCGGAAACAAACGACTCCACGCAGTTGTGTTTGCCGCAATAGCAACTGACTGATGGACCATCTTCCTGCTCCGTATAGCCTGGCAACGTGATATGACCGCATTCGGCAGCATTTCCCCAGGCCCCTATAAACGGTCGTTGCTTGATGGC > NZ_CP022686/2572586‑2572860
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
