Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F394 I0 R1 1342 215.0 7134094 96.2% 6862998 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 524,334:1 +T 100% pseudogene (239/491 nt) ybbD → pseudogene

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273524,3341.T100.0% 740.0 / NA 227pseudogene (239/491 nt)ybbDpseudogene
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base T (116/111);  total (116/111)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.
Rejected as polymorphism: Polymorphic base substitution creates a homopolymer stretch.

Only 100 of 251 total aligned reads displayed.

ATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑TTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGA  >  CP009273/524187‑524476
                                                                                                                                                    |                                                                                                                                               
  ttatACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGatta‑tt                                                                                                                                               >  1:870192/1‑148 (MQ=255)
  ttatACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGatta‑tt                                                                                                                                               <  2:3000917/148‑1 (MQ=255)
      aCAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑tttttt                                                                                                                                           >  2:3254535/1‑148 (MQ=255)
       cAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑ttttttt                                                                                                                                          <  1:2545404/148‑1 (MQ=255)
        aaaGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑tttttttt                                                                                                                                         <  2:635996/148‑2 (MQ=255)
        aaaGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑tttttttt                                                                                                                                         >  2:3402596/1‑147 (MQ=255)
         aaGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑ttttttttc                                                                                                                                        >  1:1637634/1‑146 (MQ=255)
           gATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑ttttttttctt                                                                                                                                      <  1:3002818/148‑5 (MQ=255)
            aTGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑ttttttttctta                                                                                                                                     <  2:3149022/148‑6 (MQ=255)
             tGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTAt                                                                                                                                     <  1:3310635/148‑1 (MQ=255)
              taaTCTCTTGTAAGTAAACATTACATAAACTATATTTCAATACCAGAAAATGATGGTGATTTTACATGTCTCACAGATTTTTTTACGCACGTATCGTTGGATATATCTATATACACAAATTTAGAAGATGATTATTTTTTTTCTTAtt                                                                                                                                    <  1:2666042/147‑1 (MQ=255)
              gAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTAtt                                                                                                                                    <  1:3130417/148‑1 (MQ=255)
              gAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTAtt                                                                                                                                    <  1:3131137/148‑1 (MQ=255)
               aaTCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTAttt                                                                                                                                   <  1:2748964/148‑1 (MQ=255)
                  ctctTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTc                                                                                                                                >  1:3070505/1‑148 (MQ=255)
                    ctTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTccc                                                                                                                              <  2:3427144/148‑1 (MQ=255)
                      tGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑a                                                                                                                           <  1:3341478/148‑1 (MQ=255)
                       gtaagtaaACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑aa                                                                                                                          <  1:3275484/148‑1 (MQ=255)
                       gtaagtaaACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑aa                                                                                                                          <  2:1207320/148‑1 (MQ=255)
                       gtaagtaaACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑aa                                                                                                                          >  1:2579850/1‑148 (MQ=255)
                          agtaaACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACaa                                                                                                                       <  2:525095/148‑1 (MQ=255)
                           gtaaACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACaaa                                                                                                                      <  2:2335827/148‑1 (MQ=255)
                            taaACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAat                                                                                                                     >  2:1160320/1‑148 (MQ=255)
                             aaaCATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTATTATTTTTACCTAAACAAat                                                                                                                     >  2:780721/1‑148 (MQ=255)
                               aCATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAatgat                                                                                                                  >  2:2676178/1‑148 (MQ=255)
                                  ttACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAatgatgat                                                                                                               <  1:1200108/148‑1 (MQ=255)
                                    aCATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCACACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATgg                                                                                                             <  1:2930940/148‑1 (MQ=255)
                                    aCATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCACACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATgg                                                                                                             <  1:768922/148‑1 (MQ=255)
                                      aTAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATgggg                                                                                                           <  1:1935933/148‑1 (MQ=255)
                                       tAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATggggg                                                                                                          <  1:360581/148‑1 (MQ=255)
                                        aaaCTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGt                                                                                                         >  1:697132/1‑148 (MQ=255)
                                        aaaCTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGt                                                                                                         >  1:2902580/1‑148 (MQ=255)
                                         aaCTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTa                                                                                                        <  1:819320/148‑1 (MQ=255)
                                          aCTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAg                                                                                                       <  2:2307428/148‑1 (MQ=255)
                                          aCTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAg                                                                                                       <  2:2534119/148‑1 (MQ=255)
                                           cTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAgg                                                                                                      >  1:1907153/1‑148 (MQ=255)
                                               atGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTa                                                                                                  >  1:646051/1‑148 (MQ=255)
                                               atGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTa                                                                                                  >  1:1165977/1‑148 (MQ=255)
                                                tGGCAATACCAGAAAATGATGGAGTTTTTACATTGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTaa                                                                                                 >  1:2440699/1‑148 (MQ=255)
                                                   cAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGaa                                                                                              >  1:2805614/1‑148 (MQ=255)
                                                    aaTACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGaaa                                                                                             <  2:1570096/148‑1 (MQ=255)
                                                       aCCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACa                                                                                          <  1:1038186/148‑1 (MQ=255)
                                                          aGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTg                                                                                       <  2:372988/148‑1 (MQ=255)
                                                           gAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGa                                                                                      <  2:3557639/148‑1 (MQ=255)
                                                             aaaTGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACa                                                                                    >  1:3403480/1‑148 (MQ=255)
                                                              aaTGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAg                                                                                   >  1:3497038/1‑148 (MQ=255)
                                                              aaTGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAg                                                                                   >  1:1658000/1‑148 (MQ=255)
                                                                 gatgGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGa                                                                                <  2:2149720/148‑1 (MQ=255)
                                                                           ttACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGa                                                                      <  1:1242157/148‑1 (MQ=255)
                                                                               aTGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACaa                                                                  <  2:409620/148‑1 (MQ=255)
                                                                                 ggCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGt                                                                >  2:592093/1‑148 (MQ=255)
                                                                                  gCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTg                                                               <  1:1510714/148‑1 (MQ=255)
                                                                                  gCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTg                                                               >  2:317122/1‑148 (MQ=255)
                                                                                   cTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTgg                                                              >  1:1462701/1‑148 (MQ=255)
                                                                                     cccAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCACT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCg                                                            >  1:197331/1‑148 (MQ=255)
                                                                                       cAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGaa                                                          >  1:2249709/1‑148 (MQ=255)
                                                                                       cAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGaa                                                          >  2:2847822/1‑148 (MQ=255)
                                                                                       cAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGaa                                                          >  1:1719535/1‑148 (MQ=255)
                                                                                        aGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGaaa                                                         <  1:454240/148‑1 (MQ=255)
                                                                                         gATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGaaaa                                                        >  1:95636/1‑148 (MQ=255)
                                                                                         gATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGaaaa                                                        <  2:2963889/148‑1 (MQ=255)
                                                                                            ttttttCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGG‑CAGGGCACAAGTGGCGAAAATAGt                                                    >  2:2871622/1‑148 (MQ=255)
                                                                                               tttCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTAt                                                  <  2:2078456/148‑1 (MQ=255)
                                                                                                      aCGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGaa                                           <  1:317122/148‑1 (MQ=255)
                                                                                                          aGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGACGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGACCAAGTGGCGAAAATCGTATCAAAGAATGAt                                       >  2:2380035/1‑148 (MQ=255)
                                                                                                           gCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATc                                      >  1:686068/1‑148 (MQ=255)
                                                                                                           gCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATc                                      <  1:2236168/148‑1 (MQ=255)
                                                                                                            cGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATcc                                     >  1:1000660/1‑148 (MQ=255)
                                                                                                            cGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATcc                                     <  1:5202/148‑1 (MQ=255)
                                                                                                            cGGTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATcc                                     <  1:490348/148‑1 (MQ=255)
                                                                                                             ggTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCa                                    >  2:1825734/1‑148 (MQ=255)
                                                                                                              gTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAg                                   <  2:108696/148‑1 (MQ=255)
                                                                                                              gTGGATATATCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAg                                   <  1:1134588/148‑1 (MQ=255)
                                                                                                                    atatCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACaa                             >  2:1735257/1‑148 (MQ=255)
                                                                                                                     tatCAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACaat                            >  1:97607/1‑147 (MQ=255)
                                                                                                                        cAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACaaaaaa                         >  2:309269/1‑148 (MQ=255)
                                                                                                                        cAATATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACaaaaaa                         <  2:1421558/148‑1 (MQ=255)
                                                                                                                         aaTATACACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACaaaaaaa                        <  1:611398/148‑1 (MQ=255)
                                                                                                                           tataCACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAgt                      >  2:2798126/1‑148 (MQ=255)
                                                                                                                            ataCACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAgtg                     >  2:2780113/1‑148 (MQ=255)
                                                                                                                            ataCACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAgtg                     >  2:3559129/1‑148 (MQ=255)
                                                                                                                             taCACAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAgtgt                    <  2:2593399/148‑1 (MQ=255)
                                                                                                                              acacAAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGtgtg                   <  2:870192/148‑1 (MQ=255)
                                                                                                                               cacaAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTgtgg                  <  2:1204288/148‑1 (MQ=255)
                                                                                                                               cacaAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTgtgg                  <  2:1070476/148‑1 (MQ=255)
                                                                                                                                 caAATGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCAAGATACAAAAAAAGTgtggtg                >  2:2215737/1‑148 (MQ=255)
                                                                                                                                  aaaTGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGgtgt               >  1:443754/1‑148 (MQ=255)
                                                                                                                                    aTGTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTaa             >  2:2133563/1‑148 (MQ=255)
                                                                                                                                      gTAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAat           >  1:386146/1‑148 (MQ=255)
                                                                                                                                       tAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAata          <  1:2386005/148‑1 (MQ=255)
                                                                                                                                       tAGAAGATGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAata          <  1:2006419/148‑1 (MQ=255)
                                                                                                                                        agaagaTGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAatat         <  2:110318/148‑1 (MQ=255)
                                                                                                                                         gaagaTGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATg        >  1:2846661/1‑148 (MQ=255)
                                                                                                                                         gaagaTGATTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATg        <  2:681259/148‑1 (MQ=255)
                                                                                                                                            gatgatTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTa     >  1:1529466/1‑148 (MQ=255)
                                                                                                                                            gatgatTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTa     <  2:2457221/148‑1 (MQ=255)
                                                                                                                                             atgatTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTaa    >  2:477556/1‑148 (MQ=255)
                                                                                                                                             atgatTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTaa    >  2:2658137/1‑148 (MQ=255)
                                                                                                                                              tgatTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAg   >  2:1473909/1‑148 (MQ=255)
                                                                                                                                               gatTATTTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGa  >  2:1331631/1‑148 (MQ=255)
                                                                                                                                                    |                                                                                                                                               
ATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑TTTTTTTCTTATTTTTCCCT‑AACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGA  >  CP009273/524187‑524476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A