Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 7 21
2 8 22

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 16 32
Multiple Base Substitutions 0 0
Deletions 14 123
Insertions 6 52
Mobile Element Insertions 5 8
Amplifications 2 2
Gene Conversions 0 0
Inversions 0 0
Total 43 217

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6 0 285.5 9575222 95.5% 9144337 147.1
A1 F1 I1 R1 7 0 199.2 6788896 95.7% 6496973 146.3
A1 F1 I1 R2 8 0 173.7 5773929 96.6% 5577615 147.4
A1 F1 I1 R3 7 0 222.6 7332180 97.5% 7148875 147.3
A1 F2 I1 R1 8 0 62.9 2083266 97.4% 2029101 146.5
A1 F2 I1 R2 9 0 101.3 3330996 97.7% 3254383 147.4
A1 F2 I1 R3 8 0 258.8 8449996 98.2% 8297896 147.4
A1 F3 I1 R1 10 0 251.4 8198388 97.6% 8001626 147.1
A1 F3 I1 R2 8 0 191.1 6196794 98.1% 6079054 147.2
A1 F3 I1 R3 11 0 182.8 6021716 97.3% 5859129 147.2
A1 F4 I1 R1 11 0 118.2 3917644 97.0% 3800114 147.4
A1 F4 I1 R2 10 0 248.1 8082000 98.0% 7920360 147.3
A1 F4 I1 R3 10 0 86.3 2883450 97.0% 2796946 146.4
A1 F5 I1 R1 11 0 95.4 3143468 97.4% 3061737 147.4
A1 F5 I1 R2 12 0 279.4 9030308 97.6% 8813580 147.1
A1 F5 I1 R3 12 0 127.9 4151958 97.8% 4060614 147.3
A1 F6 I1 R1 11 0 291.2 9434250 96.9% 9141788 146.7
A1 F6 I1 R2 11 0 222.7 7274896 97.2% 7071198 147.0
A1 F6 I1 R3 11 0 194.7 6346884 98.0% 6219946 147.2
A1 F7 I1 R1 11 0 274.2 8849652 98.1% 8681508 147.1
A1 F7 I1 R2 13 0 192.4 6345238 96.9% 6148535 147.1
A1 F7 I1 R3 12 0 208.8 6891922 96.8% 6671380 147.2

Mutation Needle Plot

Mutation Targets

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